RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 CLASP1Q7Z460 1538 aa33.47■■■□□ 2.95
VSX1-203ENST00000409285 KIAA0586Q9BVV6 1533 aa33.43■■■□□ 2.94
VSX1-203ENST00000409285 IQGAP2Q13576 1575 aa33.42■■■□□ 2.94
VSX1-203ENST00000409285 SHROOM2Q13796 1616 aa33.36■■■□□ 2.93
VSX1-203ENST00000409285 TNIKQ9UKE5 1360 aa33.33■■■□□ 2.93
VSX1-203ENST00000409285 UBTFP17480 764 aaKnown RBP33.3■■■□□ 2.92
VSX1-203ENST00000409285 UGGT2Q9NYU1 1516 aa33.26■■■□□ 2.91
VSX1-203ENST00000409285 LOC105371045A0A1W2PR82 267 aa33.25■■■□□ 2.91
VSX1-203ENST00000409285 EHMT2Q96KQ7 1210 aa33.25■■■□□ 2.91
VSX1-203ENST00000409285 SAMD9Q5K651 1589 aa33.18■■■□□ 2.9
VSX1-203ENST00000409285 EFCAB5A4FU69 1503 aa33.15■■■□□ 2.9
VSX1-203ENST00000409285 JPH4Q96JJ6 628 aa33.1■■■□□ 2.89
VSX1-203ENST00000409285 KIAA0556O60303 1618 aa33.1■■■□□ 2.89
VSX1-203ENST00000409285 DISP1Q96F81 1524 aa33.08■■■□□ 2.89
VSX1-203ENST00000409285 CEP162Q5TB80 1403 aa33.06■■■□□ 2.88
VSX1-203ENST00000409285 RIMBP3CA6NJZ7 1639 aa33.04■■■□□ 2.88
VSX1-203ENST00000409285 RIMBP3BA6NNM3 1639 aa33.04■■■□□ 2.88
VSX1-203ENST00000409285 RIMBP3Q9UFD9 1639 aa33.04■■■□□ 2.88
VSX1-203ENST00000409285 ARHGEF11O15085 1522 aa33.04■■■□□ 2.88
VSX1-203ENST00000409285 PRG4Q92954 1404 aaPredicted RBP33.02■■■□□ 2.88
VSX1-203ENST00000409285 CLIP1P30622 1438 aa33.01■■■□□ 2.87
VSX1-203ENST00000409285 CARMIL2Q6F5E8 1435 aa33.01■■■□□ 2.87
VSX1-203ENST00000409285 ARHGAP35Q9NRY4 1499 aa33■■■□□ 2.87
VSX1-203ENST00000409285 ERCC6L2Q5T890 1561 aa32.99■■■□□ 2.87
VSX1-203ENST00000409285 ARAP1Q96P48 1450 aa32.85■■■□□ 2.85
VSX1-203ENST00000409285 RANGAP1P46060 587 aaPredicted RBP32.85■■■□□ 2.85
VSX1-203ENST00000409285 FHOD3Q2V2M9 1422 aa32.83■■■□□ 2.85
VSX1-203ENST00000409285 FMN1Q68DA7 1419 aa32.75■■■□□ 2.83
VSX1-203ENST00000409285 P3H3Q8IVL6 736 aa32.71■■■□□ 2.83
VSX1-203ENST00000409285 PTPRGP23470 1445 aa32.71■■■□□ 2.83
VSX1-203ENST00000409285 CYB5RLQ6IPT4 315 aa32.7■■■□□ 2.83
VSX1-203ENST00000409285 ABCA8O94911 1581 aa32.68■■■□□ 2.82
VSX1-203ENST00000409285 RAPGEF6Q8TEU7 1601 aa32.67■■■□□ 2.82
VSX1-203ENST00000409285 VPS8Q8N3P4 1428 aa32.64■■■□□ 2.82
VSX1-203ENST00000409285 PCF11O94913 1555 aaKnown RBP32.64■■■□□ 2.82
VSX1-203ENST00000409285 FYCO1Q9BQS8 1478 aa32.59■■■□□ 2.81
VSX1-203ENST00000409285 HECW1Q76N89 1606 aa32.59■■■□□ 2.81
VSX1-203ENST00000409285 PLB1Q6P1J6 1458 aa32.59■■■□□ 2.81
VSX1-203ENST00000409285 ABCC2Q92887 1545 aa32.58■■■□□ 2.81
VSX1-203ENST00000409285 UHRF1BP1LA0JNW5 1464 aa32.58■■■□□ 2.81
VSX1-203ENST00000409285 CASKIN1Q8WXD9 1431 aa32.58■■■□□ 2.81
VSX1-203ENST00000409285 ADCY10Q96PN6 1610 aa32.56■■■□□ 2.8
VSX1-203ENST00000409285 UACAQ9BZF9 1416 aa32.56■■■□□ 2.8
VSX1-203ENST00000409285 LRRIQ1Q96JM4 1722 aa32.55■■■□□ 2.8
VSX1-203ENST00000409285 NUP153P49790 1475 aaKnown RBP32.49■■■□□ 2.79
VSX1-203ENST00000409285 TTBK1Q5TCY1 1321 aaPredicted RBP32.47■■■□□ 2.79
VSX1-203ENST00000409285 CFAP43Q8NDM7 1665 aa32.43■■■□□ 2.78
VSX1-203ENST00000409285 CCDC18Q5T9S5 1454 aa32.41■■■□□ 2.78
VSX1-203ENST00000409285 KDM5BQ9UGL1 1544 aa32.41■■■□□ 2.78
VSX1-203ENST00000409285 ZCCHC11Q5TAX3 1644 aaKnown RBP32.4■■■□□ 2.78
VSX1-203ENST00000409285 EPRSP07814 1512 aaKnown RBP32.39■■■□□ 2.78
VSX1-203ENST00000409285 MAP3K1Q13233 1512 aa32.36■■■□□ 2.77
VSX1-203ENST00000409285 TIAM1Q13009 1591 aa32.32■■■□□ 2.76
VSX1-203ENST00000409285 ATP10BO94823 1461 aa32.32■■■□□ 2.76
VSX1-203ENST00000409285 CDK13Q14004 1512 aaKnown RBP32.3■■■□□ 2.76
VSX1-203ENST00000409285 MAPKBP1O60336 1514 aa32.23■■■□□ 2.75
VSX1-203ENST00000409285 ATP1B4Q9UN42 357 aaPredicted RBP32.21■■■□□ 2.75
VSX1-203ENST00000409285 MAGI3Q5TCQ9 1506 aa32.14■■■□□ 2.74
VSX1-203ENST00000409285 EHBP1L1Q8N3D4 1523 aa32.13■■■□□ 2.73
VSX1-203ENST00000409285 NPM1P06748 294 aaKnown RBP eCLIP32.13■■■□□ 2.73
VSX1-203ENST00000409285 LRRC9Q6ZRR7 1453 aa32.11■■■□□ 2.73
VSX1-203ENST00000409285 ARID3CA6NKF2 412 aa32.1■■■□□ 2.73
VSX1-203ENST00000409285 APLP2Q06481 763 aa32.1■■■□□ 2.73
VSX1-203ENST00000409285 WDR7Q9Y4E6 1490 aa32.09■■■□□ 2.73
VSX1-203ENST00000409285 CDK11AQ9UQ88 783 aaPredicted RBP32.09■■■□□ 2.73
VSX1-203ENST00000409285 ASXL2Q76L83 1435 aa32.08■■■□□ 2.73
VSX1-203ENST00000409285 TROQ12816 1431 aaPredicted RBP32.07■■■□□ 2.72
VSX1-203ENST00000409285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.05■■■□□ 2.72
VSX1-203ENST00000409285 HNRNPUL2Q1KMD3 747 aaKnown RBP32.05■■■□□ 2.72
VSX1-203ENST00000409285 SUPT6HQ7KZ85 1726 aaKnown RBP32.04■■■□□ 2.72
VSX1-203ENST00000409285 KIF14Q15058 1648 aa32.04■■■□□ 2.72
VSX1-203ENST00000409285 MTUS2Q5JR59 1369 aa32.01■■■□□ 2.72
VSX1-203ENST00000409285 PLEKHD1A6NEE1 506 aa32.01■■■□□ 2.71
VSX1-203ENST00000409285 TRHP20396 242 aaPredicted RBP31.99■■■□□ 2.71
VSX1-203ENST00000409285 KANK4Q5T7N3 995 aaPredicted RBP31.95■■■□□ 2.7
VSX1-203ENST00000409285 ABCA9Q8IUA7 1624 aa31.94■■■□□ 2.7
VSX1-203ENST00000409285 DIP2BQ9P265 1576 aa31.94■■■□□ 2.7
VSX1-203ENST00000409285 KIF13AQ9H1H9 1805 aa31.94■■■□□ 2.7
VSX1-203ENST00000409285 GLI2P10070 1586 aa31.92■■■□□ 2.7
VSX1-203ENST00000409285 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.89■■■□□ 2.7
VSX1-203ENST00000409285 ABCC10Q5T3U5 1492 aa31.89■■■□□ 2.7
VSX1-203ENST00000409285 TTC37Q6PGP7 1564 aa31.89■■■□□ 2.7
VSX1-203ENST00000409285 MYO5CQ9NQX4 1742 aa31.88■■■□□ 2.69
VSX1-203ENST00000409285 CDC42BPAQ5VT25 1732 aa31.87■■■□□ 2.69
VSX1-203ENST00000409285 NCOA2Q15596 1464 aa31.87■■■□□ 2.69
VSX1-203ENST00000409285 ITSN2Q9NZM3 1697 aa31.86■■■□□ 2.69
VSX1-203ENST00000409285 MAP3K4Q9Y6R4 1608 aa31.85■■■□□ 2.69
VSX1-203ENST00000409285 PREX2Q70Z35 1606 aa31.82■■■□□ 2.68
VSX1-203ENST00000409285 CDC42BPBQ9Y5S2 1711 aa31.78■■■□□ 2.68
VSX1-203ENST00000409285 ARAP3Q8WWN8 1544 aa31.77■■■□□ 2.68
VSX1-203ENST00000409285 KCNH8Q96L42 1107 aa31.75■■■□□ 2.67
VSX1-203ENST00000409285 FAM69CQ0P6D2 419 aa31.72■■■□□ 2.67
VSX1-203ENST00000409285 GPATCH8Q9UKJ3 1502 aaKnown RBP31.71■■■□□ 2.67
VSX1-203ENST00000409285 MYOM3Q5VTT5 1437 aa31.69■■■□□ 2.66
VSX1-203ENST00000409285 CCNB3Q8WWL7 1395 aa31.68■■■□□ 2.66
VSX1-203ENST00000409285 PPRC1Q5VV67 1664 aaKnown RBP31.68■■■□□ 2.66
VSX1-203ENST00000409285 PHLDB1Q86UU1 1377 aa31.68■■■□□ 2.66
VSX1-203ENST00000409285 PPARGC1BQ86YN6 1023 aaKnown RBP31.67■■■□□ 2.66
VSX1-203ENST00000409285 CFAP74Q9C0B2 1584 aa31.66■■■□□ 2.66
VSX1-203ENST00000409285 PLCH2O75038 1416 aa31.66■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms