RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CUX2O14529 1486 aa16.63■□□□□ 0.25
HMGB1-206ENST00000405805 FBLN2P98095 1184 aa16.59■□□□□ 0.25
HMGB1-206ENST00000405805 FAM9BQ8IZU0 186 aa16.59■□□□□ 0.25
HMGB1-206ENST00000405805 CCDC136Q96JN2 1154 aa16.58■□□□□ 0.25
HMGB1-206ENST00000405805 TSHZ2Q9NRE2 1034 aa16.57■□□□□ 0.24
HMGB1-206ENST00000405805 CDK11AQ9UQ88 783 aaPredicted RBP16.57■□□□□ 0.24
HMGB1-206ENST00000405805 CARMIL1Q5VZK9 1371 aa16.56■□□□□ 0.24
HMGB1-206ENST00000405805 TONSLQ96HA7 1378 aa16.55■□□□□ 0.24
HMGB1-206ENST00000405805 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.54■□□□□ 0.24
HMGB1-206ENST00000405805 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
HMGB1-206ENST00000405805 EIF4G1Q04637 1599 aaKnown RBP16.51■□□□□ 0.23
HMGB1-206ENST00000405805 DHX57Q6P158 1386 aaKnown RBP16.5■□□□□ 0.23
HMGB1-206ENST00000405805 CCNB3Q8WWL7 1395 aa16.49■□□□□ 0.23
HMGB1-206ENST00000405805 CLSPNQ9HAW4 1339 aa16.49■□□□□ 0.23
HMGB1-206ENST00000405805 NCAPD3P42695 1498 aa16.49■□□□□ 0.23
HMGB1-206ENST00000405805 RRP7BPQ9NSQ0 103 aa16.49■□□□□ 0.23
HMGB1-206ENST00000405805 DAXXQ9UER7 740 aaPredicted RBP16.48■□□□□ 0.23
HMGB1-206ENST00000405805 SALL2Q9Y467 1007 aaPredicted RBP16.45■□□□□ 0.22
HMGB1-206ENST00000405805 TDRD9Q8NDG6 1382 aaKnown RBP16.44■□□□□ 0.22
HMGB1-206ENST00000405805 RAB3GAP2Q9H2M9 1393 aa16.42■□□□□ 0.22
HMGB1-206ENST00000405805 GLIPR1L2Q4G1C9 344 aa16.41■□□□□ 0.22
HMGB1-206ENST00000405805 MTUS2Q5JR59 1369 aa16.41■□□□□ 0.22
HMGB1-206ENST00000405805 RBM19Q9Y4C8 960 aaKnown RBP16.41■□□□□ 0.22
HMGB1-206ENST00000405805 IGF1RP08069 1367 aa16.4■□□□□ 0.22
HMGB1-206ENST00000405805 KIF21BO75037 1637 aa16.4■□□□□ 0.22
HMGB1-206ENST00000405805 ANO8Q9HCE9 1232 aaPredicted RBP16.38■□□□□ 0.21
HMGB1-206ENST00000405805 MRS2Q9HD23 443 aa16.38■□□□□ 0.21
HMGB1-206ENST00000405805 CUX1P39880 1505 aa16.37■□□□□ 0.21
HMGB1-206ENST00000405805 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
HMGB1-206ENST00000405805 ZNF777Q9ULD5 760 aaPredicted RBP16.37■□□□□ 0.21
HMGB1-206ENST00000405805 NPM2Q86SE8 214 aaKnown RBP16.36■□□□□ 0.21
HMGB1-206ENST00000405805 PEG3Q9GZU2 1588 aa16.36■□□□□ 0.21
HMGB1-206ENST00000405805 CFTRP13569 1480 aa16.35■□□□□ 0.21
HMGB1-206ENST00000405805 DEKP35659 375 aaKnown RBP16.34■□□□□ 0.21
HMGB1-206ENST00000405805 ARAP1Q96P48 1450 aa16.34■□□□□ 0.21
HMGB1-206ENST00000405805 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
HMGB1-206ENST00000405805 FGD5Q6ZNL6 1462 aa16.33■□□□□ 0.2
HMGB1-206ENST00000405805 FHOD3Q2V2M9 1422 aa16.33■□□□□ 0.2
HMGB1-206ENST00000405805 FANCD2Q9BXW9 1451 aa16.33■□□□□ 0.2
HMGB1-206ENST00000405805 TOP2BQ02880 1626 aa16.32■□□□□ 0.2
HMGB1-206ENST00000405805 FOXD1Q16676 465 aa16.32■□□□□ 0.2
HMGB1-206ENST00000405805 B4GALNT3Q6L9W6 998 aa16.32■□□□□ 0.2
HMGB1-206ENST00000405805 PRXQ9BXM0 1461 aa16.31■□□□□ 0.2
HMGB1-206ENST00000405805 NESP48681 1621 aa16.29■□□□□ 0.2
HMGB1-206ENST00000405805 MYT1LQ9UL68 1186 aa16.29■□□□□ 0.2
HMGB1-206ENST00000405805 SETD5Q9C0A6 1442 aa16.27■□□□□ 0.19
HMGB1-206ENST00000405805 PPP1R15AO75807 674 aaPredicted RBP16.26■□□□□ 0.19
HMGB1-206ENST00000405805 EIF4G2P78344 907 aaKnown RBP eCLIP16.26■□□□□ 0.19
HMGB1-206ENST00000405805 FHAD1B1AJZ9 1412 aa16.24■□□□□ 0.19
HMGB1-206ENST00000405805 HMGXB3Q12766 1538 aa16.24■□□□□ 0.19
HMGB1-206ENST00000405805 ARHGAP35Q9NRY4 1499 aa16.23■□□□□ 0.19
HMGB1-206ENST00000405805 KDM2AQ9Y2K7 1162 aa16.23■□□□□ 0.19
HMGB1-206ENST00000405805 CHMP7Q8WUX9 453 aaPredicted RBP16.22■□□□□ 0.19
HMGB1-206ENST00000405805 ANP32AP39687 249 aaKnown RBP16.19■□□□□ 0.18
HMGB1-206ENST00000405805 HSPA5P11021 654 aaKnown RBP16.19■□□□□ 0.18
HMGB1-206ENST00000405805 CC2D2AQ9P2K1 1620 aa16.18■□□□□ 0.18
HMGB1-206ENST00000405805 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
HMGB1-206ENST00000405805 ERICH3Q5RHP9 1530 aa16.16■□□□□ 0.18
HMGB1-206ENST00000405805 PHLDB1Q86UU1 1377 aa16.16■□□□□ 0.18
HMGB1-206ENST00000405805 TMC1Q8TDI8 760 aa16.16■□□□□ 0.18
HMGB1-206ENST00000405805 PDS5BQ9NTI5 1447 aa16.15■□□□□ 0.18
HMGB1-206ENST00000405805 CCER2I3L3R5 266 aa16.14■□□□□ 0.17
HMGB1-206ENST00000405805 ARXQ96QS3 562 aa16.12■□□□□ 0.17
HMGB1-206ENST00000405805 PPP4R2Q9NY27 417 aa16.08■□□□□ 0.16
HMGB1-206ENST00000405805 ZBTB47Q9UFB7 747 aaPredicted RBP16.08■□□□□ 0.16
HMGB1-206ENST00000405805 POLA1P09884 1462 aaPredicted RBP16.07■□□□□ 0.16
HMGB1-206ENST00000405805 FMN1Q68DA7 1419 aa16.06■□□□□ 0.16
HMGB1-206ENST00000405805 L3MBTL2Q969R5 705 aa16.05■□□□□ 0.16
HMGB1-206ENST00000405805 LRRC9Q6ZRR7 1453 aa16.04■□□□□ 0.16
HMGB1-206ENST00000405805 TOPBP1Q92547 1522 aa16.04■□□□□ 0.16
HMGB1-206ENST00000405805 BIVM-ERCC5R4GMW8 1640 aa16.03■□□□□ 0.16
HMGB1-206ENST00000405805 RRBP1Q9P2E9 1410 aaKnown RBP16.03■□□□□ 0.16
HMGB1-206ENST00000405805 RGL3Q3MIN7 710 aa16.03■□□□□ 0.16
HMGB1-206ENST00000405805 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.03■□□□□ 0.162e-7■■■□□ 14.6
HMGB1-206ENST00000405805 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.162e-9■■■■□ 19.7
HMGB1-206ENST00000405805 GAPVD1Q14C86 1478 aa16.03■□□□□ 0.16
HMGB1-206ENST00000405805 CFDP1Q9UEE9 299 aaPredicted RBP16.02■□□□□ 0.16
HMGB1-206ENST00000405805 CCDC184Q52MB2 194 aa16.02■□□□□ 0.15
HMGB1-206ENST00000405805 TIMELESSQ9UNS1 1208 aa16.02■□□□□ 0.15
HMGB1-206ENST00000405805 ERCC6Q03468 1493 aa16.02■□□□□ 0.15
HMGB1-206ENST00000405805 LAS1LQ9Y4W2 734 aaKnown RBP15.99■□□□□ 0.15
HMGB1-206ENST00000405805 MPHOSPH9Q99550 1183 aa15.98■□□□□ 0.15
HMGB1-206ENST00000405805 NEFMP07197 916 aa15.96■□□□□ 0.15
HMGB1-206ENST00000405805 PLEKHD1A6NEE1 506 aa15.95■□□□□ 0.14
HMGB1-206ENST00000405805 WDR97A6NE52 1622 aa15.95■□□□□ 0.14
HMGB1-206ENST00000405805 VSIG10Q8N0Z9 540 aa15.95■□□□□ 0.14
HMGB1-206ENST00000405805 NOP58Q9Y2X3 529 aaKnown RBP15.94■□□□□ 0.14
HMGB1-206ENST00000405805 PKNOX2Q96KN3 472 aa15.94■□□□□ 0.14
HMGB1-206ENST00000405805 TSPY4P0CV99 314 aa15.93■□□□□ 0.14
HMGB1-206ENST00000405805 TSPY10P0CW01 314 aa15.93■□□□□ 0.14
HMGB1-206ENST00000405805 ARID4BQ4LE39 1312 aaPredicted RBP15.93■□□□□ 0.14
HMGB1-206ENST00000405805 CARD11Q9BXL7 1154 aa15.92■□□□□ 0.14
HMGB1-206ENST00000405805 ZNF644Q9H582 1327 aaPredicted RBP15.92■□□□□ 0.14
HMGB1-206ENST00000405805 A0A0U1RQG5 324 aaPredicted RBP15.92■□□□□ 0.14
HMGB1-206ENST00000405805 PODXL2Q9NZ53 605 aa15.92■□□□□ 0.14
HMGB1-206ENST00000405805 WASHC2AQ641Q2 1341 aa15.91■□□□□ 0.14
HMGB1-206ENST00000405805 MSH5O43196 834 aa15.91■□□□□ 0.14
HMGB1-206ENST00000405805 TIAM1Q13009 1591 aa15.91■□□□□ 0.14
HMGB1-206ENST00000405805 PRKRIP1Q9H875 184 aaPredicted RBP15.9■□□□□ 0.14
HMGB1-206ENST00000405805 FGD6Q6ZV73 1430 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms