RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 KIAA0586Q9BVV6 1533 aa26.14■■□□□ 1.77
HMGA1-204ENST00000401473 JPH4Q96JJ6 628 aa26.1■■□□□ 1.77
HMGA1-204ENST00000401473 GOLGA3Q08378 1498 aa26.09■■□□□ 1.77
HMGA1-204ENST00000401473 LOC105371045A0A1W2PR82 267 aa26.09■■□□□ 1.77
HMGA1-204ENST00000401473 UBTFP17480 764 aaKnown RBP26.08■■□□□ 1.77
HMGA1-204ENST00000401473 ARHGEF11O15085 1522 aa26.08■■□□□ 1.77
HMGA1-204ENST00000401473 SHROOM2Q13796 1616 aa26.05■■□□□ 1.76
HMGA1-204ENST00000401473 RIMBP3CA6NJZ7 1639 aa26.03■■□□□ 1.76
HMGA1-204ENST00000401473 RIMBP3BA6NNM3 1639 aa26.03■■□□□ 1.76
HMGA1-204ENST00000401473 RIMBP3Q9UFD9 1639 aa26.03■■□□□ 1.76
HMGA1-204ENST00000401473 CTTNBP2Q8WZ74 1663 aa26.02■■□□□ 1.76
HMGA1-204ENST00000401473 ERCC6L2Q5T890 1561 aa26.02■■□□□ 1.76
HMGA1-204ENST00000401473 IQGAP2Q13576 1575 aa26■■□□□ 1.75
HMGA1-204ENST00000401473 PRG4Q92954 1404 aaPredicted RBP26■■□□□ 1.75
HMGA1-204ENST00000401473 RANGAP1P46060 587 aaPredicted RBP25.93■■□□□ 1.74
HMGA1-204ENST00000401473 ARAP1Q96P48 1450 aa25.92■■□□□ 1.74
HMGA1-204ENST00000401473 TNIKQ9UKE5 1360 aa25.9■■□□□ 1.74
HMGA1-204ENST00000401473 UGGT2Q9NYU1 1516 aa25.89■■□□□ 1.74
HMGA1-204ENST00000401473 CYB5RLQ6IPT4 315 aa25.89■■□□□ 1.73
HMGA1-204ENST00000401473 DISP1Q96F81 1524 aa25.87■■□□□ 1.73
HMGA1-204ENST00000401473 CARMIL2Q6F5E8 1435 aa25.81■■□□□ 1.72
HMGA1-204ENST00000401473 P3H3Q8IVL6 736 aa25.81■■□□□ 1.72
HMGA1-204ENST00000401473 KIAA0556O60303 1618 aa25.76■■□□□ 1.71
HMGA1-204ENST00000401473 TTBK1Q5TCY1 1321 aaPredicted RBP25.75■■□□□ 1.71
HMGA1-204ENST00000401473 SAMD9Q5K651 1589 aa25.74■■□□□ 1.71
HMGA1-204ENST00000401473 PTPRGP23470 1445 aa25.72■■□□□ 1.71
HMGA1-204ENST00000401473 ARHGAP35Q9NRY4 1499 aa25.71■■□□□ 1.71
HMGA1-204ENST00000401473 CLIP1P30622 1438 aa25.68■■□□□ 1.7
HMGA1-204ENST00000401473 CEP162Q5TB80 1403 aa25.68■■□□□ 1.7
HMGA1-204ENST00000401473 EFCAB5A4FU69 1503 aa25.66■■□□□ 1.7
HMGA1-204ENST00000401473 FHOD3Q2V2M9 1422 aa25.66■■□□□ 1.7
HMGA1-204ENST00000401473 PLB1Q6P1J6 1458 aa25.55■■□□□ 1.68
HMGA1-204ENST00000401473 ADCY10Q96PN6 1610 aa25.55■■□□□ 1.68
HMGA1-204ENST00000401473 UACAQ9BZF9 1416 aa25.54■■□□□ 1.68
HMGA1-204ENST00000401473 UHRF1BP1LA0JNW5 1464 aa25.48■■□□□ 1.67
HMGA1-204ENST00000401473 ABCA8O94911 1581 aa25.47■■□□□ 1.67
HMGA1-204ENST00000401473 ABCC2Q92887 1545 aa25.47■■□□□ 1.67
HMGA1-204ENST00000401473 FMN1Q68DA7 1419 aa25.46■■□□□ 1.67
HMGA1-204ENST00000401473 NPM1P06748 294 aaKnown RBP eCLIP25.4■■□□□ 1.66
HMGA1-204ENST00000401473 RAPGEF6Q8TEU7 1601 aa25.4■■□□□ 1.66
HMGA1-204ENST00000401473 ARID3CA6NKF2 412 aa25.38■■□□□ 1.65
HMGA1-204ENST00000401473 KDM5BQ9UGL1 1544 aa25.38■■□□□ 1.65
HMGA1-204ENST00000401473 ATP1B4Q9UN42 357 aaPredicted RBP25.38■■□□□ 1.65
HMGA1-204ENST00000401473 NUP153P49790 1475 aaKnown RBP25.36■■□□□ 1.65
HMGA1-204ENST00000401473 CASKIN1Q8WXD9 1431 aa25.33■■□□□ 1.65
HMGA1-204ENST00000401473 VPS8Q8N3P4 1428 aa25.32■■□□□ 1.64
HMGA1-204ENST00000401473 ATP10BO94823 1461 aa25.32■■□□□ 1.64
HMGA1-204ENST00000401473 PCF11O94913 1555 aaKnown RBP25.32■■□□□ 1.64
HMGA1-204ENST00000401473 ZCCHC11Q5TAX3 1644 aaKnown RBP25.3■■□□□ 1.64
HMGA1-204ENST00000401473 MAPKBP1O60336 1514 aa25.29■■□□□ 1.64
HMGA1-204ENST00000401473 FYCO1Q9BQS8 1478 aa25.26■■□□□ 1.63
HMGA1-204ENST00000401473 ASXL2Q76L83 1435 aa25.26■■□□□ 1.63
HMGA1-204ENST00000401473 LRRIQ1Q96JM4 1722 aa25.26■■□□□ 1.63
HMGA1-204ENST00000401473 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.25■■□□□ 1.63
HMGA1-204ENST00000401473 HNRNPUL2Q1KMD3 747 aaKnown RBP25.25■■□□□ 1.63
HMGA1-204ENST00000401473 EPRSP07814 1512 aaKnown RBP25.25■■□□□ 1.63
HMGA1-204ENST00000401473 HECW1Q76N89 1606 aa25.25■■□□□ 1.63
HMGA1-204ENST00000401473 CDK13Q14004 1512 aaKnown RBP25.23■■□□□ 1.63
HMGA1-204ENST00000401473 TRHP20396 242 aaPredicted RBP25.22■■□□□ 1.63
HMGA1-204ENST00000401473 ABCC10Q5T3U5 1492 aa25.16■■□□□ 1.62
HMGA1-204ENST00000401473 WDR7Q9Y4E6 1490 aa25.16■■□□□ 1.62
HMGA1-204ENST00000401473 FAM69CQ0P6D2 419 aa25.14■■□□□ 1.61
HMGA1-204ENST00000401473 PLEKHD1A6NEE1 506 aa25.13■■□□□ 1.61
HMGA1-204ENST00000401473 CCDC18Q5T9S5 1454 aa25.13■■□□□ 1.61
HMGA1-204ENST00000401473 KCNH8Q96L42 1107 aa25.13■■□□□ 1.61
HMGA1-204ENST00000401473 DIP2BQ9P265 1576 aa25.11■■□□□ 1.61
HMGA1-204ENST00000401473 CDK11AQ9UQ88 783 aaPredicted RBP25.09■■□□□ 1.61
HMGA1-204ENST00000401473 KIF13AQ9H1H9 1805 aa25.08■■□□□ 1.61
HMGA1-204ENST00000401473 MAGI3Q5TCQ9 1506 aa25.07■■□□□ 1.6
HMGA1-204ENST00000401473 KANK4Q5T7N3 995 aaPredicted RBP25.05■■□□□ 1.6
HMGA1-204ENST00000401473 TIAM1Q13009 1591 aa25.04■■□□□ 1.6
HMGA1-204ENST00000401473 APLP2Q06481 763 aa25.02■■□□□ 1.6
HMGA1-204ENST00000401473 MAP3K1Q13233 1512 aa25.02■■□□□ 1.6
HMGA1-204ENST00000401473 GLI2P10070 1586 aa25.01■■□□□ 1.59
HMGA1-204ENST00000401473 TROQ12816 1431 aaPredicted RBP25.01■■□□□ 1.59
HMGA1-204ENST00000401473 CFAP43Q8NDM7 1665 aa25■■□□□ 1.59
HMGA1-204ENST00000401473 MTUS2Q5JR59 1369 aa24.98■■□□□ 1.59
HMGA1-204ENST00000401473 LRRC9Q6ZRR7 1453 aa24.96■■□□□ 1.59
HMGA1-204ENST00000401473 KIF14Q15058 1648 aa24.93■■□□□ 1.58
HMGA1-204ENST00000401473 MAP3K4Q9Y6R4 1608 aa24.92■■□□□ 1.58
HMGA1-204ENST00000401473 PPARGC1BQ86YN6 1023 aaKnown RBP24.92■■□□□ 1.58
HMGA1-204ENST00000401473 CD109Q6YHK3 1445 aa24.91■■□□□ 1.58
HMGA1-204ENST00000401473 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.91■■□□□ 1.588e-9■■■■□ 20.1
HMGA1-204ENST00000401473 ABCA9Q8IUA7 1624 aa24.91■■□□□ 1.58
HMGA1-204ENST00000401473 TSPOAP1O95153 1857 aa24.89■■□□□ 1.58
HMGA1-204ENST00000401473 EHBP1L1Q8N3D4 1523 aa24.88■■□□□ 1.57
HMGA1-204ENST00000401473 TTC37Q6PGP7 1564 aa24.87■■□□□ 1.57
HMGA1-204ENST00000401473 PPRC1Q5VV67 1664 aaKnown RBP24.86■■□□□ 1.57
HMGA1-204ENST00000401473 NCOA2Q15596 1464 aa24.81■■□□□ 1.56
HMGA1-204ENST00000401473 SUPT6HQ7KZ85 1726 aaKnown RBP24.79■■□□□ 1.56
HMGA1-204ENST00000401473 PLCH2O75038 1416 aa24.76■■□□□ 1.55
HMGA1-204ENST00000401473 GPATCH8Q9UKJ3 1502 aaKnown RBP24.76■■□□□ 1.55
HMGA1-204ENST00000401473 TEX14Q8IWB6 1497 aa24.75■■□□□ 1.55
HMGA1-204ENST00000401473 CCNB3Q8WWL7 1395 aa24.74■■□□□ 1.55
HMGA1-204ENST00000401473 CDC42BPAQ5VT25 1732 aa24.74■■□□□ 1.55
HMGA1-204ENST00000401473 PHLDB1Q86UU1 1377 aa24.72■■□□□ 1.55
HMGA1-204ENST00000401473 CDC42BPBQ9Y5S2 1711 aa24.72■■□□□ 1.55
HMGA1-204ENST00000401473 MYO5CQ9NQX4 1742 aa24.72■■□□□ 1.55
HMGA1-204ENST00000401473 FANCAO15360 1455 aa24.71■■□□□ 1.55
HMGA1-204ENST00000401473 COL17A1Q9UMD9 1497 aaPredicted RBP24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms