RNA–Protein interactions for RNA: ENST00000400814.3

PRAMEF1-202, Transcript of PRAME family member 1, humanhuman

TSL 1 (best)

Gene PRAMEF1, Length 1,327 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-202ENST00000400814 SPDYE2BA6NHP3 402 aa16.42■□□□□ 0.22
PRAMEF1-202ENST00000400814 SPDYE6P0CI01 402 aa16.42■□□□□ 0.22
PRAMEF1-202ENST00000400814 SPDYE2Q495Y8 402 aa16.42■□□□□ 0.22
PRAMEF1-202ENST00000400814 PLCD3Q8N3E9 789 aa16.42■□□□□ 0.22
PRAMEF1-202ENST00000400814 NPM1P06748 294 aaKnown RBP eCLIP16.41■□□□□ 0.22
PRAMEF1-202ENST00000400814 SSUH2Q9Y2M2 353 aa16.4■□□□□ 0.22
PRAMEF1-202ENST00000400814 DSG3P32926 999 aa16.38■□□□□ 0.21
PRAMEF1-202ENST00000400814 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
PRAMEF1-202ENST00000400814 PAXIP1Q6ZW49 1069 aaPredicted RBP16.36■□□□□ 0.21
PRAMEF1-202ENST00000400814 MIER1Q8N108 512 aa16.34■□□□□ 0.21
PRAMEF1-202ENST00000400814 RGL2O15211 777 aa16.33■□□□□ 0.2
PRAMEF1-202ENST00000400814 CFAP44Q96MT7 982 aa16.31■□□□□ 0.2
PRAMEF1-202ENST00000400814 KDM2AQ9Y2K7 1162 aa16.31■□□□□ 0.2
PRAMEF1-202ENST00000400814 PRKCSHP14314 528 aaPredicted RBP16.28■□□□□ 0.2
PRAMEF1-202ENST00000400814 TAOK2Q9UL54 1235 aa16.28■□□□□ 0.2
PRAMEF1-202ENST00000400814 CFTRP13569 1480 aa16.25■□□□□ 0.19
PRAMEF1-202ENST00000400814 CADPSQ9ULU8 1353 aa16.24■□□□□ 0.19
PRAMEF1-202ENST00000400814 SPRYD3Q8NCJ5 442 aa16.19■□□□□ 0.18
PRAMEF1-202ENST00000400814 CIZ1Q9ULV3 898 aaPredicted RBP16.17■□□□□ 0.18
PRAMEF1-202ENST00000400814 ZBTB47Q9UFB7 747 aaPredicted RBP16.15■□□□□ 0.18
PRAMEF1-202ENST00000400814 PLEKHG5O94827 1062 aa16.14■□□□□ 0.17
PRAMEF1-202ENST00000400814 LAMC3Q9Y6N6 1575 aa16.12■□□□□ 0.17
PRAMEF1-202ENST00000400814 PRDM2Q13029 1718 aa16.11■□□□□ 0.17
PRAMEF1-202ENST00000400814 TSHZ2Q9NRE2 1034 aa16.11■□□□□ 0.17
PRAMEF1-202ENST00000400814 CHGAP10645 457 aaKnown RBP16.1■□□□□ 0.17
PRAMEF1-202ENST00000400814 NESP48681 1621 aa16.1■□□□□ 0.17
PRAMEF1-202ENST00000400814 ABCC8Q09428 1581 aa16.07■□□□□ 0.16
PRAMEF1-202ENST00000400814 TRIM41Q8WV44 630 aa16.07■□□□□ 0.16
PRAMEF1-202ENST00000400814 TPRNQ4KMQ1 711 aa16.04■□□□□ 0.16
PRAMEF1-202ENST00000400814 WRNQ14191 1432 aaPredicted RBP eCLIP16.04■□□□□ 0.16
PRAMEF1-202ENST00000400814 POTEDQ86YR6 584 aa16.03■□□□□ 0.16
PRAMEF1-202ENST00000400814 FANCD2Q9BXW9 1451 aa16.02■□□□□ 0.16
PRAMEF1-202ENST00000400814 PDS5BQ9NTI5 1447 aa16.01■□□□□ 0.15
PRAMEF1-202ENST00000400814 SYNJ1O43426 1573 aa15.95■□□□□ 0.14
PRAMEF1-202ENST00000400814 HS6ST3Q8IZP7 471 aa15.94■□□□□ 0.14
PRAMEF1-202ENST00000400814 TOP2BQ02880 1626 aa15.94■□□□□ 0.14
PRAMEF1-202ENST00000400814 CUX1P39880 1505 aa15.93■□□□□ 0.14
PRAMEF1-202ENST00000400814 BIVM-ERCC5R4GMW8 1640 aa15.92■□□□□ 0.14
PRAMEF1-202ENST00000400814 CEP164Q9UPV0 1460 aa15.92■□□□□ 0.14
PRAMEF1-202ENST00000400814 GSE1Q14687 1217 aa15.91■□□□□ 0.14
PRAMEF1-202ENST00000400814 DNAJC5Q9H3Z4 198 aa15.89■□□□□ 0.13
PRAMEF1-202ENST00000400814 KIF21AQ7Z4S6 1674 aa15.88■□□□□ 0.13
PRAMEF1-202ENST00000400814 RNF25Q96BH1 459 aaPredicted RBP15.86■□□□□ 0.13
PRAMEF1-202ENST00000400814 DNMBPQ6XZF7 1577 aa15.84■□□□□ 0.13
PRAMEF1-202ENST00000400814 URB2Q14146 1524 aaKnown RBP15.83■□□□□ 0.13
PRAMEF1-202ENST00000400814 TOPBP1Q92547 1522 aa15.83■□□□□ 0.13
PRAMEF1-202ENST00000400814 NUBP1P53384 320 aa15.83■□□□□ 0.12
PRAMEF1-202ENST00000400814 MRC2Q9UBG0 1479 aa15.79■□□□□ 0.12
PRAMEF1-202ENST00000400814 FGD5Q6ZNL6 1462 aa15.77■□□□□ 0.12
PRAMEF1-202ENST00000400814 SOGA1O94964 1423 aa15.76■□□□□ 0.11
PRAMEF1-202ENST00000400814 ERCC6Q03468 1493 aa15.76■□□□□ 0.11
PRAMEF1-202ENST00000400814 DCAF8Q5TAQ9 597 aa15.76■□□□□ 0.11
PRAMEF1-202ENST00000400814 NBR1Q14596 966 aa15.75■□□□□ 0.11
PRAMEF1-202ENST00000400814 EEA1Q15075 1411 aa15.75■□□□□ 0.11
PRAMEF1-202ENST00000400814 RIOK3O14730 519 aaKnown RBP15.74■□□□□ 0.11
PRAMEF1-202ENST00000400814 NKX1-1Q15270 411 aaPredicted RBP15.73■□□□□ 0.11
PRAMEF1-202ENST00000400814 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
PRAMEF1-202ENST00000400814 WDR62O43379 1518 aa15.72■□□□□ 0.11
PRAMEF1-202ENST00000400814 RUSC2Q8N2Y8 1516 aa15.72■□□□□ 0.11
PRAMEF1-202ENST00000400814 FAM9AQ8IZU1 332 aaPredicted RBP15.71■□□□□ 0.11
PRAMEF1-202ENST00000400814 THOC2Q8NI27 1593 aaKnown RBP15.7■□□□□ 0.1
PRAMEF1-202ENST00000400814 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
PRAMEF1-202ENST00000400814 GTPBP6O43824 516 aaPredicted RBP15.68■□□□□ 0.1
PRAMEF1-202ENST00000400814 RAD54L2Q9Y4B4 1467 aa15.67■□□□□ 0.1
PRAMEF1-202ENST00000400814 ABCA10Q8WWZ4 1543 aa15.66■□□□□ 0.1
PRAMEF1-202ENST00000400814 CACNB1Q02641 598 aaPredicted RBP15.66■□□□□ 0.1
PRAMEF1-202ENST00000400814 KIF27Q86VH2 1401 aa15.65■□□□□ 0.1
PRAMEF1-202ENST00000400814 FAM212AQ96EL1 285 aa15.65■□□□□ 0.1
PRAMEF1-202ENST00000400814 CUX2O14529 1486 aa15.64■□□□□ 0.09
PRAMEF1-202ENST00000400814 VGFO15240 615 aaPredicted RBP15.63■□□□□ 0.09
PRAMEF1-202ENST00000400814 CREBZFQ9NS37 354 aa15.63■□□□□ 0.09
PRAMEF1-202ENST00000400814 LOC105371045A0A1W2PR82 267 aa15.62■□□□□ 0.09
PRAMEF1-202ENST00000400814 STK25O00506 426 aa15.62■□□□□ 0.09
PRAMEF1-202ENST00000400814 TARBP1Q13395 1621 aaKnown RBP15.61■□□□□ 0.09
PRAMEF1-202ENST00000400814 WDR97A6NE52 1622 aa15.6■□□□□ 0.09
PRAMEF1-202ENST00000400814 CHRM1P11229 460 aaPredicted RBP15.6■□□□□ 0.09
PRAMEF1-202ENST00000400814 MNX1P50219 401 aaPredicted RBP15.6■□□□□ 0.09
PRAMEF1-202ENST00000400814 AKT1S1Q96B36 256 aa15.59■□□□□ 0.09
PRAMEF1-202ENST00000400814 IFT140Q96RY7 1462 aa15.59■□□□□ 0.09
PRAMEF1-202ENST00000400814 PRR29P0C7W0 189 aa15.58■□□□□ 0.08
PRAMEF1-202ENST00000400814 CLEC11AQ9Y240 323 aa15.58■□□□□ 0.08
PRAMEF1-202ENST00000400814 IGF1RP08069 1367 aa15.57■□□□□ 0.08
PRAMEF1-202ENST00000400814 SGIP1Q9BQI5 828 aa15.56■□□□□ 0.08
PRAMEF1-202ENST00000400814 TDRD9Q8NDG6 1382 aaKnown RBP15.54■□□□□ 0.08
PRAMEF1-202ENST00000400814 RBM42Q9BTD8 480 aaKnown RBP15.53■□□□□ 0.08
PRAMEF1-202ENST00000400814 ABCA5Q8WWZ7 1642 aa15.52■□□□□ 0.08
PRAMEF1-202ENST00000400814 RASEFQ8IZ41 740 aa15.52■□□□□ 0.08
PRAMEF1-202ENST00000400814 PRXQ9BXM0 1461 aa15.52■□□□□ 0.08
PRAMEF1-202ENST00000400814 KIF21BO75037 1637 aa15.52■□□□□ 0.07
PRAMEF1-202ENST00000400814 GAPVD1Q14C86 1478 aa15.51■□□□□ 0.07
PRAMEF1-202ENST00000400814 STK24Q9Y6E0 443 aa15.49■□□□□ 0.07
PRAMEF1-202ENST00000400814 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.48■□□□□ 0.07
PRAMEF1-202ENST00000400814 ZFP91Q96JP5 570 aaPredicted RBP15.48■□□□□ 0.07
PRAMEF1-202ENST00000400814 BCL11BQ9C0K0 894 aaPredicted RBP15.48■□□□□ 0.07
PRAMEF1-202ENST00000400814 AQRO60306 1485 aaKnown RBP eCLIP15.48■□□□□ 0.07
PRAMEF1-202ENST00000400814 ERICH3Q5RHP9 1530 aa15.48■□□□□ 0.07
PRAMEF1-202ENST00000400814 CARMIL1Q5VZK9 1371 aa15.47■□□□□ 0.07
PRAMEF1-202ENST00000400814 GOLGA3Q08378 1498 aa15.47■□□□□ 0.07
PRAMEF1-202ENST00000400814 ZNF608Q9ULD9 1512 aaPredicted RBP15.47■□□□□ 0.07
PRAMEF1-202ENST00000400814 RYDENQ9NUL5 291 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms