RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 CCNB3Q8WWL7 1395 aa19.9■□□□□ 0.78
SCAF4-202ENST00000399804 NESP48681 1621 aa19.89■□□□□ 0.78
SCAF4-202ENST00000399804 DNAJC5BQ9UF47 199 aa19.88■□□□□ 0.77
SCAF4-202ENST00000399804 PLEKHD1A6NEE1 506 aa19.87■□□□□ 0.77
SCAF4-202ENST00000399804 TONSLQ96HA7 1378 aa19.85■□□□□ 0.77
SCAF4-202ENST00000399804 NEFLP07196 543 aa19.83■□□□□ 0.77
SCAF4-202ENST00000399804 FHOD3Q2V2M9 1422 aa19.83■□□□□ 0.76
SCAF4-202ENST00000399804 CUX1P39880 1505 aa19.81■□□□□ 0.76
SCAF4-202ENST00000399804 TSPY4P0CV99 314 aa19.81■□□□□ 0.76
SCAF4-202ENST00000399804 TSPY10P0CW01 314 aa19.81■□□□□ 0.76
SCAF4-202ENST00000399804 KCNH8Q96L42 1107 aa19.78■□□□□ 0.76
SCAF4-202ENST00000399804 GTF3C3Q9Y5Q9 886 aa19.78■□□□□ 0.76
SCAF4-202ENST00000399804 TOP2BQ02880 1626 aa19.78■□□□□ 0.76
SCAF4-202ENST00000399804 CFDP1Q9UEE9 299 aaPredicted RBP19.78■□□□□ 0.76
SCAF4-202ENST00000399804 ACIN1Q9UKV3 1341 aaKnown RBP19.76■□□□□ 0.75
SCAF4-202ENST00000399804 FMN1Q68DA7 1419 aa19.76■□□□□ 0.75
SCAF4-202ENST00000399804 NPM1P06748 294 aaKnown RBP eCLIP19.75■□□□□ 0.75
SCAF4-202ENST00000399804 ANP32CO43423 234 aa19.74■□□□□ 0.75
SCAF4-202ENST00000399804 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
SCAF4-202ENST00000399804 PRXQ9BXM0 1461 aa19.7■□□□□ 0.74
SCAF4-202ENST00000399804 SIN3AQ96ST3 1273 aa19.7■□□□□ 0.74
SCAF4-202ENST00000399804 KIF21BO75037 1637 aa19.7■□□□□ 0.74
SCAF4-202ENST00000399804 DDX10Q13206 875 aaKnown RBP19.7■□□□□ 0.74
SCAF4-202ENST00000399804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.749e-9■■□□□ 12.8
SCAF4-202ENST00000399804 SLC4A1APQ9BWU0 796 aaKnown RBP19.69■□□□□ 0.74
SCAF4-202ENST00000399804 HIRIP3Q9BW71 556 aaPredicted RBP19.68■□□□□ 0.74
SCAF4-202ENST00000399804 ARHGAP35Q9NRY4 1499 aa19.66■□□□□ 0.74
SCAF4-202ENST00000399804 TOPBP1Q92547 1522 aa19.66■□□□□ 0.74
SCAF4-202ENST00000399804 AQRO60306 1485 aaKnown RBP eCLIP19.65■□□□□ 0.745e-7■■■□□ 18.5
SCAF4-202ENST00000399804 CLSPNQ9HAW4 1339 aa19.65■□□□□ 0.74
SCAF4-202ENST00000399804 POLA1P09884 1462 aaPredicted RBP19.64■□□□□ 0.73
SCAF4-202ENST00000399804 JPH4Q96JJ6 628 aa19.63■□□□□ 0.73
SCAF4-202ENST00000399804 ERICH3Q5RHP9 1530 aa19.62■□□□□ 0.73
SCAF4-202ENST00000399804 MIER1Q8N108 512 aa19.61■□□□□ 0.73
SCAF4-202ENST00000399804 CARMIL2Q6F5E8 1435 aa19.6■□□□□ 0.73
SCAF4-202ENST00000399804 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
SCAF4-202ENST00000399804 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
SCAF4-202ENST00000399804 RAB3GAP2Q9H2M9 1393 aa19.57■□□□□ 0.72
SCAF4-202ENST00000399804 KDM2AQ9Y2K7 1162 aa19.54■□□□□ 0.72
SCAF4-202ENST00000399804 DNMBPQ6XZF7 1577 aa19.51■□□□□ 0.71
SCAF4-202ENST00000399804 MRC2Q9UBG0 1479 aa19.47■□□□□ 0.71
SCAF4-202ENST00000399804 CHGAP10645 457 aaKnown RBP19.45■□□□□ 0.7
SCAF4-202ENST00000399804 LAMC3Q9Y6N6 1575 aa19.45■□□□□ 0.7
SCAF4-202ENST00000399804 GRIN2BQ13224 1484 aa19.44■□□□□ 0.7
SCAF4-202ENST00000399804 EIF4G2P78344 907 aaKnown RBP eCLIP19.44■□□□□ 0.7
SCAF4-202ENST00000399804 ABCA10Q8WWZ4 1543 aa19.43■□□□□ 0.7
SCAF4-202ENST00000399804 PHLDB1Q86UU1 1377 aa19.41■□□□□ 0.7
SCAF4-202ENST00000399804 RGL3Q3MIN7 710 aa19.4■□□□□ 0.7
SCAF4-202ENST00000399804 FOXD1Q16676 465 aa19.4■□□□□ 0.7
SCAF4-202ENST00000399804 DHX57Q6P158 1386 aaKnown RBP19.4■□□□□ 0.7
SCAF4-202ENST00000399804 BIVM-ERCC5R4GMW8 1640 aa19.39■□□□□ 0.69
SCAF4-202ENST00000399804 LRRC9Q6ZRR7 1453 aa19.38■□□□□ 0.69
SCAF4-202ENST00000399804 TIMELESSQ9UNS1 1208 aa19.37■□□□□ 0.69
SCAF4-202ENST00000399804 URB2Q14146 1524 aaKnown RBP19.37■□□□□ 0.69
SCAF4-202ENST00000399804 CCDC18Q5T9S5 1454 aa19.36■□□□□ 0.69
SCAF4-202ENST00000399804 CASKIN1Q8WXD9 1431 aa19.36■□□□□ 0.69
SCAF4-202ENST00000399804 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
SCAF4-202ENST00000399804 BCANQ96GW7 911 aa19.34■□□□□ 0.69
SCAF4-202ENST00000399804 MPHOSPH9Q99550 1183 aa19.34■□□□□ 0.69
SCAF4-202ENST00000399804 PTPRGP23470 1445 aa19.33■□□□□ 0.68
SCAF4-202ENST00000399804 HNRNPMP52272 730 aaKnown RBP eCLIP19.31■□□□□ 0.68
SCAF4-202ENST00000399804 PKD2Q13563 968 aa19.28■□□□□ 0.68
SCAF4-202ENST00000399804 FGD6Q6ZV73 1430 aa19.27■□□□□ 0.68
SCAF4-202ENST00000399804 FAM9BQ8IZU0 186 aa19.27■□□□□ 0.68
SCAF4-202ENST00000399804 HNRNPUQ00839 825 aaKnown RBP eCLIP19.27■□□□□ 0.68
SCAF4-202ENST00000399804 PPP1R15AO75807 674 aaPredicted RBP19.26■□□□□ 0.67
SCAF4-202ENST00000399804 ESF1Q9H501 851 aaKnown RBP19.26■□□□□ 0.67
SCAF4-202ENST00000399804 ZNF644Q9H582 1327 aaPredicted RBP19.25■□□□□ 0.67
SCAF4-202ENST00000399804 FYCO1Q9BQS8 1478 aa19.25■□□□□ 0.67
SCAF4-202ENST00000399804 EFCAB2Q5VUJ9 269 aa19.25■□□□□ 0.67
SCAF4-202ENST00000399804 RRBP1Q9P2E9 1410 aaKnown RBP19.24■□□□□ 0.67
SCAF4-202ENST00000399804 SNAPC4Q5SXM2 1469 aa19.24■□□□□ 0.67
SCAF4-202ENST00000399804 EFCAB5A4FU69 1503 aa19.24■□□□□ 0.67
SCAF4-202ENST00000399804 STAG3Q9UJ98 1225 aa19.23■□□□□ 0.67
SCAF4-202ENST00000399804 ANKRD30AQ9BXX3 1397 aa19.23■□□□□ 0.67
SCAF4-202ENST00000399804 MYOM3Q5VTT5 1437 aa19.23■□□□□ 0.67
SCAF4-202ENST00000399804 CARD11Q9BXL7 1154 aa19.22■□□□□ 0.67
SCAF4-202ENST00000399804 NUP155O75694 1391 aa19.21■□□□□ 0.67
SCAF4-202ENST00000399804 MYT1Q01538 1121 aa19.21■□□□□ 0.67
SCAF4-202ENST00000399804 NCOA2Q15596 1464 aa19.2■□□□□ 0.66
SCAF4-202ENST00000399804 MRS2Q9HD23 443 aa19.2■□□□□ 0.66
SCAF4-202ENST00000399804 DCAF11Q8TEB1 546 aa19.19■□□□□ 0.66
SCAF4-202ENST00000399804 ERICH6Q7L0X2 663 aa19.17■□□□□ 0.66
SCAF4-202ENST00000399804 ZNF608Q9ULD9 1512 aaPredicted RBP19.17■□□□□ 0.66
SCAF4-202ENST00000399804 L3MBTL2Q969R5 705 aa19.17■□□□□ 0.66
SCAF4-202ENST00000399804 TIAM1Q13009 1591 aa19.16■□□□□ 0.66
SCAF4-202ENST00000399804 TMC1Q8TDI8 760 aa19.15■□□□□ 0.66
SCAF4-202ENST00000399804 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
SCAF4-202ENST00000399804 PLPPR3Q6T4P5 718 aa19.15■□□□□ 0.66
SCAF4-202ENST00000399804 HSPA5P11021 654 aaKnown RBP19.13■□□□□ 0.65
SCAF4-202ENST00000399804 RSPH4AQ5TD94 716 aa19.13■□□□□ 0.65
SCAF4-202ENST00000399804 KIAA0586Q9BVV6 1533 aa19.12■□□□□ 0.65
SCAF4-202ENST00000399804 PRDM2Q13029 1718 aa19.12■□□□□ 0.65
SCAF4-202ENST00000399804 CUL7Q14999 1698 aa19.12■□□□□ 0.65
SCAF4-202ENST00000399804 PRG4Q92954 1404 aaPredicted RBP19.1■□□□□ 0.65
SCAF4-202ENST00000399804 OSCARQ8IYS5 282 aa19.1■□□□□ 0.65
SCAF4-202ENST00000399804 FKBP8Q14318 412 aa19.09■□□□□ 0.65
SCAF4-202ENST00000399804 SALL2Q9Y467 1007 aaPredicted RBP19.09■□□□□ 0.65
SCAF4-202ENST00000399804 PCF11O94913 1555 aaKnown RBP19.05■□□□□ 0.64
SCAF4-202ENST00000399804 SPAG9O60271 1321 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms