RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 PROM2Q8N271 834 aa14.46□□□□□ -0.09
PTCHD4-202ENST00000398738 SUPT16HQ9Y5B9 1047 aaKnown RBP14.45□□□□□ -0.1
PTCHD4-202ENST00000398738 WIZO95785 1651 aa14.45□□□□□ -0.1
PTCHD4-202ENST00000398738 RUSC2Q8N2Y8 1516 aa14.4□□□□□ -0.1
PTCHD4-202ENST00000398738 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
PTCHD4-202ENST00000398738 OSCARQ8IYS5 282 aa14.39□□□□□ -0.11
PTCHD4-202ENST00000398738 SMARCA4P51532 1647 aa14.38□□□□□ -0.11
PTCHD4-202ENST00000398738 TNIKQ9UKE5 1360 aa14.38□□□□□ -0.11
PTCHD4-202ENST00000398738 PLCB2Q00722 1185 aa14.37□□□□□ -0.11
PTCHD4-202ENST00000398738 FBLN2P98095 1184 aa14.37□□□□□ -0.11
PTCHD4-202ENST00000398738 PEG3Q9GZU2 1588 aa14.37□□□□□ -0.11
PTCHD4-202ENST00000398738 FBXO3Q9UK99 471 aa14.36□□□□□ -0.11
PTCHD4-202ENST00000398738 TSHZ2Q9NRE2 1034 aa14.35□□□□□ -0.11
PTCHD4-202ENST00000398738 ITGAEP38570 1179 aa14.34□□□□□ -0.11
PTCHD4-202ENST00000398738 BAZ1AQ9NRL2 1556 aaPredicted RBP14.34□□□□□ -0.11
PTCHD4-202ENST00000398738 PRKCSHP14314 528 aaPredicted RBP14.34□□□□□ -0.11
PTCHD4-202ENST00000398738 HAP1P54257 671 aaPredicted RBP14.33□□□□□ -0.12
PTCHD4-202ENST00000398738 KCNH8Q96L42 1107 aa14.33□□□□□ -0.12
PTCHD4-202ENST00000398738 ANP32EQ9BTT0 268 aa14.29□□□□□ -0.12
PTCHD4-202ENST00000398738 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.13
PTCHD4-202ENST00000398738 NCAPD3P42695 1498 aa14.25□□□□□ -0.13
PTCHD4-202ENST00000398738 HMGXB3Q12766 1538 aa14.25□□□□□ -0.13
PTCHD4-202ENST00000398738 BCL11AQ9H165 835 aa14.24□□□□□ -0.13
PTCHD4-202ENST00000398738 SMARCA2P51531 1590 aa14.24□□□□□ -0.13
PTCHD4-202ENST00000398738 ATAD2BQ9ULI0 1458 aa14.22□□□□□ -0.13
PTCHD4-202ENST00000398738 POTEDQ86YR6 584 aa14.22□□□□□ -0.13
PTCHD4-202ENST00000398738 CLIP1P30622 1438 aa14.22□□□□□ -0.13
PTCHD4-202ENST00000398738 GOLGA3Q08378 1498 aa14.21□□□□□ -0.14
PTCHD4-202ENST00000398738 DSG3P32926 999 aa14.2□□□□□ -0.14
PTCHD4-202ENST00000398738 KLHL34Q8N239 644 aa14.2□□□□□ -0.14
PTCHD4-202ENST00000398738 ZNF692Q9BU19 519 aaPredicted RBP14.18□□□□□ -0.14
PTCHD4-202ENST00000398738 RGL2O15211 777 aa14.17□□□□□ -0.14
PTCHD4-202ENST00000398738 HIRIP3Q9BW71 556 aaPredicted RBP14.16□□□□□ -0.14
PTCHD4-202ENST00000398738 DDX10Q13206 875 aaKnown RBP14.15□□□□□ -0.14
PTCHD4-202ENST00000398738 KANK4Q5T7N3 995 aaPredicted RBP14.13□□□□□ -0.15
PTCHD4-202ENST00000398738 TRIM52Q96A61 297 aa14.13□□□□□ -0.15
PTCHD4-202ENST00000398738 KDM2AQ9Y2K7 1162 aa14.13□□□□□ -0.15
PTCHD4-202ENST00000398738 DHX57Q6P158 1386 aaKnown RBP14.12□□□□□ -0.15
PTCHD4-202ENST00000398738 CLSPNQ9HAW4 1339 aa14.11□□□□□ -0.15
PTCHD4-202ENST00000398738 EEA1Q15075 1411 aa14.1□□□□□ -0.15
PTCHD4-202ENST00000398738 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
PTCHD4-202ENST00000398738 NEFLP07196 543 aa14.09□□□□□ -0.15
PTCHD4-202ENST00000398738 VPS8Q8N3P4 1428 aa14.09□□□□□ -0.15
PTCHD4-202ENST00000398738 ECM2O94769 699 aaPredicted RBP14.07□□□□□ -0.16
PTCHD4-202ENST00000398738 CFAP44Q96MT7 982 aa14.07□□□□□ -0.16
PTCHD4-202ENST00000398738 RBM19Q9Y4C8 960 aaKnown RBP14.06□□□□□ -0.16
PTCHD4-202ENST00000398738 PLCD3Q8N3E9 789 aa14.05□□□□□ -0.16
PTCHD4-202ENST00000398738 CEP164Q9UPV0 1460 aa14.05□□□□□ -0.16
PTCHD4-202ENST00000398738 TOP2AP11388 1531 aaKnown RBP14.04□□□□□ -0.16
PTCHD4-202ENST00000398738 BAZ1BQ9UIG0 1483 aaKnown RBP14.04□□□□□ -0.16
PTCHD4-202ENST00000398738 RAPGEF2Q9Y4G8 1499 aa14.04□□□□□ -0.16
PTCHD4-202ENST00000398738 PAXIP1Q6ZW49 1069 aaPredicted RBP14.03□□□□□ -0.16
PTCHD4-202ENST00000398738 IRX6P78412 446 aaPredicted RBP14.02□□□□□ -0.17
PTCHD4-202ENST00000398738 SIN3AQ96ST3 1273 aa14.02□□□□□ -0.17
PTCHD4-202ENST00000398738 ATP1B4Q9UN42 357 aaPredicted RBP13.99□□□□□ -0.17
PTCHD4-202ENST00000398738 ERICH6Q7L0X2 663 aa13.95□□□□□ -0.18
PTCHD4-202ENST00000398738 CIZ1Q9ULV3 898 aaPredicted RBP13.95□□□□□ -0.18
PTCHD4-202ENST00000398738 FAM50AQ14320 339 aaKnown RBP13.94□□□□□ -0.18
PTCHD4-202ENST00000398738 SPOCK2Q92563 424 aa13.94□□□□□ -0.18
PTCHD4-202ENST00000398738 SSUH2Q9Y2M2 353 aa13.94□□□□□ -0.18
PTCHD4-202ENST00000398738 KIF21BO75037 1637 aa13.92□□□□□ -0.18
PTCHD4-202ENST00000398738 ANP32CO43423 234 aa13.9□□□□□ -0.18
PTCHD4-202ENST00000398738 RNF25Q96BH1 459 aaPredicted RBP13.89□□□□□ -0.19
PTCHD4-202ENST00000398738 SYNJ1O43426 1573 aa13.88□□□□□ -0.19
PTCHD4-202ENST00000398738 LAMC3Q9Y6N6 1575 aa13.88□□□□□ -0.19
PTCHD4-202ENST00000398738 CHGAP10645 457 aaKnown RBP13.88□□□□□ -0.19
PTCHD4-202ENST00000398738 PRDM2Q13029 1718 aa13.87□□□□□ -0.19
PTCHD4-202ENST00000398738 RAB3GAP2Q9H2M9 1393 aa13.86□□□□□ -0.19
PTCHD4-202ENST00000398738 CCNB3Q8WWL7 1395 aa13.86□□□□□ -0.19
PTCHD4-202ENST00000398738 P3H3Q8IVL6 736 aa13.85□□□□□ -0.19
PTCHD4-202ENST00000398738 HNRNPUQ00839 825 aaKnown RBP eCLIP13.84□□□□□ -0.195e-6■■■■□ 19.4
PTCHD4-202ENST00000398738 ZBTB12Q9Y330 459 aaPredicted RBP13.82□□□□□ -0.2
PTCHD4-202ENST00000398738 CDK11AQ9UQ88 783 aaPredicted RBP13.82□□□□□ -0.2
PTCHD4-202ENST00000398738 SPDYE2BA6NHP3 402 aa13.81□□□□□ -0.2
PTCHD4-202ENST00000398738 SPDYE6P0CI01 402 aa13.81□□□□□ -0.2
PTCHD4-202ENST00000398738 SPDYE2Q495Y8 402 aa13.81□□□□□ -0.2
PTCHD4-202ENST00000398738 CNGB1Q14028 1251 aaPredicted RBP13.81□□□□□ -0.2
PTCHD4-202ENST00000398738 PPP1R15AO75807 674 aaPredicted RBP13.8□□□□□ -0.2
PTCHD4-202ENST00000398738 TAOK2Q9UL54 1235 aa13.79□□□□□ -0.2
PTCHD4-202ENST00000398738 ARAP1Q96P48 1450 aa13.79□□□□□ -0.2
PTCHD4-202ENST00000398738 TPRNQ4KMQ1 711 aa13.76□□□□□ -0.21
PTCHD4-202ENST00000398738 CFTRP13569 1480 aa13.76□□□□□ -0.21
PTCHD4-202ENST00000398738 NESP48681 1621 aa13.75□□□□□ -0.21
PTCHD4-202ENST00000398738 KIF21AQ7Z4S6 1674 aa13.75□□□□□ -0.21
PTCHD4-202ENST00000398738 WDR97A6NE52 1622 aa13.74□□□□□ -0.21
PTCHD4-202ENST00000398738 NBR1Q14596 966 aa13.74□□□□□ -0.21
PTCHD4-202ENST00000398738 CADPSQ9ULU8 1353 aa13.74□□□□□ -0.21
PTCHD4-202ENST00000398738 RRBP1Q9P2E9 1410 aaKnown RBP13.74□□□□□ -0.21
PTCHD4-202ENST00000398738 SENP3-EIF4A1A0A087X0R7 540 aa13.73□□□□□ -0.21
PTCHD4-202ENST00000398738 THOC2Q8NI27 1593 aaKnown RBP13.73□□□□□ -0.21
PTCHD4-202ENST00000398738 B4GALNT3Q6L9W6 998 aa13.71□□□□□ -0.21
PTCHD4-202ENST00000398738 CCER2I3L3R5 266 aa13.71□□□□□ -0.22
PTCHD4-202ENST00000398738 SETD5Q9C0A6 1442 aa13.7□□□□□ -0.22
PTCHD4-202ENST00000398738 BBXQ8WY36 941 aaPredicted RBP13.69□□□□□ -0.22
PTCHD4-202ENST00000398738 FAM9BQ8IZU0 186 aa13.69□□□□□ -0.22
PTCHD4-202ENST00000398738 NKX1-1Q15270 411 aaPredicted RBP13.68□□□□□ -0.22
PTCHD4-202ENST00000398738 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.68□□□□□ -0.22
PTCHD4-202ENST00000398738 MAPKBP1O60336 1514 aa13.68□□□□□ -0.22
PTCHD4-202ENST00000398738 CACNB1Q02641 598 aaPredicted RBP13.67□□□□□ -0.22
PTCHD4-202ENST00000398738 DEKP35659 375 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms