RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 EIF4G3O43432 1585 aaKnown RBP8.52□□□□□ -1.04
VPS41-203ENST00000395969 GAPVD1Q14C86 1478 aa8.52□□□□□ -1.05
VPS41-203ENST00000395969 GRIN2BQ13224 1484 aa8.51□□□□□ -1.05
VPS41-203ENST00000395969 FHAD1B1AJZ9 1412 aa8.51□□□□□ -1.05
VPS41-203ENST00000395969 ARHGAP35Q9NRY4 1499 aa8.51□□□□□ -1.05
VPS41-203ENST00000395969 FOXD1Q16676 465 aa8.51□□□□□ -1.05
VPS41-203ENST00000395969 CLIP1P30622 1438 aa8.49□□□□□ -1.05
VPS41-203ENST00000395969 PCGF6Q9BYE7 350 aa8.49□□□□□ -1.05
VPS41-203ENST00000395969 CARMIL1Q5VZK9 1371 aa8.49□□□□□ -1.05
VPS41-203ENST00000395969 SHROOM2Q13796 1616 aa8.49□□□□□ -1.05
VPS41-203ENST00000395969 FYCO1Q9BQS8 1478 aa8.48□□□□□ -1.05
VPS41-203ENST00000395969 RAD54L2Q9Y4B4 1467 aa8.48□□□□□ -1.05
VPS41-203ENST00000395969 SNAPC4Q5SXM2 1469 aa8.46□□□□□ -1.06
VPS41-203ENST00000395969 TIAM1Q13009 1591 aa8.46□□□□□ -1.06
VPS41-203ENST00000395969 ARHGEF11O15085 1522 aa8.46□□□□□ -1.06
VPS41-203ENST00000395969 LOC105371045A0A1W2PR82 267 aa8.46□□□□□ -1.06
VPS41-203ENST00000395969 LRRIQ1Q96JM4 1722 aa8.45□□□□□ -1.06
VPS41-203ENST00000395969 IQGAP2Q13576 1575 aa8.45□□□□□ -1.06
VPS41-203ENST00000395969 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS41-203ENST00000395969 NUP160Q12769 1436 aa8.45□□□□□ -1.06
VPS41-203ENST00000395969 CASKIN1Q8WXD9 1431 aa8.43□□□□□ -1.06
VPS41-203ENST00000395969 ADCY10Q96PN6 1610 aa8.43□□□□□ -1.06
VPS41-203ENST00000395969 RRBP1Q9P2E9 1410 aaKnown RBP8.42□□□□□ -1.06
VPS41-203ENST00000395969 SYNJ2O15056 1496 aa8.42□□□□□ -1.06
VPS41-203ENST00000395969 KIAA0586Q9BVV6 1533 aa8.42□□□□□ -1.06
VPS41-203ENST00000395969 KCNA4P22459 653 aa8.42□□□□□ -1.06
VPS41-203ENST00000395969 MYT1Q01538 1121 aa8.42□□□□□ -1.06
VPS41-203ENST00000395969 KIAA0556O60303 1618 aa8.41□□□□□ -1.06
VPS41-203ENST00000395969 TRIM26Q12899 539 aaPredicted RBP8.41□□□□□ -1.06
VPS41-203ENST00000395969 PCF11O94913 1555 aaKnown RBP8.41□□□□□ -1.06
VPS41-203ENST00000395969 GRIN2AQ12879 1464 aa8.4□□□□□ -1.06
VPS41-203ENST00000395969 CCDC18Q5T9S5 1454 aa8.39□□□□□ -1.07
VPS41-203ENST00000395969 PRKCSHP14314 528 aaPredicted RBP8.39□□□□□ -1.07
VPS41-203ENST00000395969 HECW1Q76N89 1606 aa8.39□□□□□ -1.07
VPS41-203ENST00000395969 FMN1Q68DA7 1419 aa8.39□□□□□ -1.07
VPS41-203ENST00000395969 CEP170Q5SW79 1584 aa8.38□□□□□ -1.07
VPS41-203ENST00000395969 SCAF1Q9H7N4 1312 aaKnown RBP8.38□□□□□ -1.07
VPS41-203ENST00000395969 DNAJC5BQ9UF47 199 aa8.38□□□□□ -1.07
VPS41-203ENST00000395969 CLASP1Q7Z460 1538 aa8.36□□□□□ -1.07
VPS41-203ENST00000395969 DISP1Q96F81 1524 aa8.36□□□□□ -1.07
VPS41-203ENST00000395969 EHBP1L1Q8N3D4 1523 aa8.35□□□□□ -1.07
VPS41-203ENST00000395969 ZNF608Q9ULD9 1512 aaPredicted RBP8.35□□□□□ -1.07
VPS41-203ENST00000395969 LRRC9Q6ZRR7 1453 aa8.34□□□□□ -1.07
VPS41-203ENST00000395969 ABCA8O94911 1581 aa8.34□□□□□ -1.08
VPS41-203ENST00000395969 TCOF1Q13428 1488 aaKnown RBP8.33□□□□□ -1.08
VPS41-203ENST00000395969 CHD1O14646 1710 aa8.32□□□□□ -1.08
VPS41-203ENST00000395969 SUPT6HQ7KZ85 1726 aaKnown RBP8.32□□□□□ -1.08
VPS41-203ENST00000395969 RAPGEF6Q8TEU7 1601 aa8.32□□□□□ -1.08
VPS41-203ENST00000395969 ERCC6Q03468 1493 aa8.32□□□□□ -1.08
VPS41-203ENST00000395969 AKNAQ7Z591 1439 aa8.3□□□□□ -1.08
VPS41-203ENST00000395969 TDRD9Q8NDG6 1382 aaKnown RBP8.28□□□□□ -1.08
VPS41-203ENST00000395969 GCC2Q8IWJ2 1684 aa8.28□□□□□ -1.08
VPS41-203ENST00000395969 DAXXQ9UER7 740 aaPredicted RBP8.28□□□□□ -1.08
VPS41-203ENST00000395969 UHRF1BP1LA0JNW5 1464 aa8.28□□□□□ -1.08
VPS41-203ENST00000395969 ITSN2Q9NZM3 1697 aa8.27□□□□□ -1.09
VPS41-203ENST00000395969 ZEB1P37275 1124 aaPredicted RBP8.27□□□□□ -1.09
VPS41-203ENST00000395969 NCBP3Q53F19 620 aaKnown RBP8.27□□□□□ -1.09
VPS41-203ENST00000395969 CROCC2H7BZ55 1655 aa8.26□□□□□ -1.09
VPS41-203ENST00000395969 CLSPNQ9HAW4 1339 aa8.26□□□□□ -1.09
VPS41-203ENST00000395969 KDM5BQ9UGL1 1544 aa8.25□□□□□ -1.09
VPS41-203ENST00000395969 MIA2Q96PC5 1412 aa8.25□□□□□ -1.09
VPS41-203ENST00000395969 EPRSP07814 1512 aaKnown RBP8.24□□□□□ -1.09
VPS41-203ENST00000395969 ARAP3Q8WWN8 1544 aa8.24□□□□□ -1.09
VPS41-203ENST00000395969 FAM9AQ8IZU1 332 aaPredicted RBP8.24□□□□□ -1.09
VPS41-203ENST00000395969 MAGI3Q5TCQ9 1506 aa8.24□□□□□ -1.09
VPS41-203ENST00000395969 ACIN1Q9UKV3 1341 aaKnown RBP8.23□□□□□ -1.09
VPS41-203ENST00000395969 UBTFP17480 764 aaKnown RBP8.23□□□□□ -1.09
VPS41-203ENST00000395969 NUP153P49790 1475 aaKnown RBP8.22□□□□□ -1.09
VPS41-203ENST00000395969 ADGBQ8N7X0 1667 aa8.21□□□□□ -1.09
VPS41-203ENST00000395969 AMER1Q5JTC6 1135 aaPredicted RBP8.21□□□□□ -1.09
VPS41-203ENST00000395969 MAST1Q9Y2H9 1570 aa8.2□□□□□ -1.1
VPS41-203ENST00000395969 DNMT1P26358 1616 aaKnown RBP8.2□□□□□ -1.1
VPS41-203ENST00000395969 FHOD3Q2V2M9 1422 aa8.2□□□□□ -1.1
VPS41-203ENST00000395969 ARHGEF5Q12774 1597 aa8.19□□□□□ -1.1
VPS41-203ENST00000395969 PTPN23Q9H3S7 1636 aa8.19□□□□□ -1.1
VPS41-203ENST00000395969 SHANK2Q9UPX8 1470 aa8.18□□□□□ -1.1
VPS41-203ENST00000395969 CARMIL2Q6F5E8 1435 aa8.18□□□□□ -1.1
VPS41-203ENST00000395969 ABCC10Q5T3U5 1492 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 MYOM3Q5VTT5 1437 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 PREX2Q70Z35 1606 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 CDC42BPAQ5VT25 1732 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 ADGRL2O95490 1459 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 CCNB3Q8WWL7 1395 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 ABCC2Q92887 1545 aa8.17□□□□□ -1.1
VPS41-203ENST00000395969 NCOA2Q15596 1464 aa8.16□□□□□ -1.1
VPS41-203ENST00000395969 FGD6Q6ZV73 1430 aa8.16□□□□□ -1.1
VPS41-203ENST00000395969 ROCK1Q13464 1354 aa8.15□□□□□ -1.1
VPS41-203ENST00000395969 KDM5DQ9BY66 1539 aa8.15□□□□□ -1.11
VPS41-203ENST00000395969 KIF14Q15058 1648 aa8.14□□□□□ -1.11
VPS41-203ENST00000395969 TROQ12816 1431 aaPredicted RBP8.14□□□□□ -1.11
VPS41-203ENST00000395969 HFM1A2PYH4 1435 aa8.13□□□□□ -1.11
VPS41-203ENST00000395969 PHLDB1Q86UU1 1377 aa8.13□□□□□ -1.11
VPS41-203ENST00000395969 BCORL1Q5H9F3 1711 aa8.13□□□□□ -1.11
VPS41-203ENST00000395969 PLXNC1O60486 1568 aa8.12□□□□□ -1.11
VPS41-203ENST00000395969 WDR7Q9Y4E6 1490 aa8.11□□□□□ -1.11
VPS41-203ENST00000395969 CDC42BPBQ9Y5S2 1711 aa8.11□□□□□ -1.11
VPS41-203ENST00000395969 ZCCHC11Q5TAX3 1644 aaKnown RBP8.1□□□□□ -1.11
VPS41-203ENST00000395969 PIAS4Q8N2W9 510 aaPredicted RBP8.1□□□□□ -1.11
VPS41-203ENST00000395969 MYO5CQ9NQX4 1742 aa8.1□□□□□ -1.11
VPS41-203ENST00000395969 NEUROD1Q13562 356 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms