RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CCNB3Q8WWL7 1395 aa4.8□□□□□ -1.64
VPS13C-203ENST00000395896 PRXQ9BXM0 1461 aa4.8□□□□□ -1.64
VPS13C-203ENST00000395896 RSPH4AQ5TD94 716 aa4.8□□□□□ -1.64
VPS13C-203ENST00000395896 ABCA10Q8WWZ4 1543 aa4.79□□□□□ -1.64
VPS13C-203ENST00000395896 CCDC18Q5T9S5 1454 aa4.79□□□□□ -1.64
VPS13C-203ENST00000395896 TOPBP1Q92547 1522 aa4.79□□□□□ -1.64
VPS13C-203ENST00000395896 GRIN2BQ13224 1484 aa4.79□□□□□ -1.64
VPS13C-203ENST00000395896 WDR97A6NE52 1622 aa4.78□□□□□ -1.64
VPS13C-203ENST00000395896 IFT140Q96RY7 1462 aa4.78□□□□□ -1.64
VPS13C-203ENST00000395896 MYT1LQ9UL68 1186 aa4.78□□□□□ -1.64
VPS13C-203ENST00000395896 ARHGAP35Q9NRY4 1499 aa4.78□□□□□ -1.64
VPS13C-203ENST00000395896 MRC2Q9UBG0 1479 aa4.78□□□□□ -1.64
VPS13C-203ENST00000395896 POLA1P09884 1462 aaPredicted RBP4.78□□□□□ -1.65
VPS13C-203ENST00000395896 IGF1RP08069 1367 aa4.77□□□□□ -1.65
VPS13C-203ENST00000395896 DIEXFQ68CQ4 756 aaKnown RBP4.77□□□□□ -1.65
VPS13C-203ENST00000395896 TONSLQ96HA7 1378 aa4.77□□□□□ -1.65
VPS13C-203ENST00000395896 TDRD9Q8NDG6 1382 aaKnown RBP4.76□□□□□ -1.65
VPS13C-203ENST00000395896 CUX1P39880 1505 aa4.76□□□□□ -1.65
VPS13C-203ENST00000395896 P3H3Q8IVL6 736 aa4.76□□□□□ -1.65
VPS13C-203ENST00000395896 MAP3K1Q13233 1512 aa4.76□□□□□ -1.65
VPS13C-203ENST00000395896 TRIM52Q96A61 297 aa4.76□□□□□ -1.65
VPS13C-203ENST00000395896 NEFLP07196 543 aa4.76□□□□□ -1.65
VPS13C-203ENST00000395896 ZNF316A6NFI3 1004 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-203ENST00000395896 MAGI1Q96QZ7 1491 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-203ENST00000395896 CFDP1Q9UEE9 299 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-203ENST00000395896 FYCO1Q9BQS8 1478 aa4.75□□□□□ -1.65
VPS13C-203ENST00000395896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS13C-203ENST00000395896 AQRO60306 1485 aaKnown RBP eCLIP4.72□□□□□ -1.651e-6■■■■■ 33.2
VPS13C-203ENST00000395896 JPH4Q96JJ6 628 aa4.72□□□□□ -1.65
VPS13C-203ENST00000395896 THOC2Q8NI27 1593 aaKnown RBP4.72□□□□□ -1.65
VPS13C-203ENST00000395896 KIF21AQ7Z4S6 1674 aa4.72□□□□□ -1.65
VPS13C-203ENST00000395896 CASKIN1Q8WXD9 1431 aa4.72□□□□□ -1.65
VPS13C-203ENST00000395896 CTTNBP2Q8WZ74 1663 aa4.72□□□□□ -1.65
VPS13C-203ENST00000395896 RUSC2Q8N2Y8 1516 aa4.71□□□□□ -1.66
VPS13C-203ENST00000395896 KIAA0586Q9BVV6 1533 aa4.71□□□□□ -1.66
VPS13C-203ENST00000395896 IQGAP2Q13576 1575 aa4.71□□□□□ -1.66
VPS13C-203ENST00000395896 SUPT6HQ7KZ85 1726 aaKnown RBP4.7□□□□□ -1.66
VPS13C-203ENST00000395896 ZNF777Q9ULD5 760 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-203ENST00000395896 ANP32CO43423 234 aa4.7□□□□□ -1.66
VPS13C-203ENST00000395896 SETD5Q9C0A6 1442 aa4.7□□□□□ -1.66
VPS13C-203ENST00000395896 HECW1Q76N89 1606 aa4.7□□□□□ -1.66
VPS13C-203ENST00000395896 NESP48681 1621 aa4.69□□□□□ -1.66
VPS13C-203ENST00000395896 SYNJ2O15056 1496 aa4.69□□□□□ -1.66
VPS13C-203ENST00000395896 MIA2Q96PC5 1412 aa4.69□□□□□ -1.66
VPS13C-203ENST00000395896 ESF1Q9H501 851 aaKnown RBP4.69□□□□□ -1.66
VPS13C-203ENST00000395896 STAC3Q96MF2 364 aa4.69□□□□□ -1.66
VPS13C-203ENST00000395896 SLC4A1APQ9BWU0 796 aaKnown RBP4.69□□□□□ -1.66
VPS13C-203ENST00000395896 CDCA8Q53HL2 280 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 RAD54L2Q9Y4B4 1467 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 LRRC9Q6ZRR7 1453 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 MYOM3Q5VTT5 1437 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 ANKRD30AQ9BXX3 1397 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 TIAM1Q13009 1591 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 EFCAB2Q5VUJ9 269 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 EHBP1L1Q8N3D4 1523 aa4.68□□□□□ -1.66
VPS13C-203ENST00000395896 PTPRGP23470 1445 aa4.67□□□□□ -1.66
VPS13C-203ENST00000395896 NEUROD1Q13562 356 aa4.67□□□□□ -1.66
VPS13C-203ENST00000395896 EIF4G2P78344 907 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS13C-203ENST00000395896 ARAP1Q96P48 1450 aa4.67□□□□□ -1.66
VPS13C-203ENST00000395896 FHOD3Q2V2M9 1422 aa4.67□□□□□ -1.66
VPS13C-203ENST00000395896 KANK1Q14678 1352 aa4.66□□□□□ -1.66
VPS13C-203ENST00000395896 RRBP1Q9P2E9 1410 aaKnown RBP4.66□□□□□ -1.66
VPS13C-203ENST00000395896 PLEKHH2Q8IVE3 1493 aa4.66□□□□□ -1.66
VPS13C-203ENST00000395896 URB2Q14146 1524 aaKnown RBP4.66□□□□□ -1.66
VPS13C-203ENST00000395896 OSCARQ8IYS5 282 aa4.66□□□□□ -1.66
VPS13C-203ENST00000395896 WDR62O43379 1518 aa4.65□□□□□ -1.66
VPS13C-203ENST00000395896 FGD6Q6ZV73 1430 aa4.65□□□□□ -1.66
VPS13C-203ENST00000395896 GRIN2AQ12879 1464 aa4.65□□□□□ -1.67
VPS13C-203ENST00000395896 KAT6BQ8WYB5 2073 aa4.64□□□□□ -1.67
VPS13C-203ENST00000395896 ABCA5Q8WWZ7 1642 aa4.64□□□□□ -1.67
VPS13C-203ENST00000395896 ITSN2Q9NZM3 1697 aa4.64□□□□□ -1.67
VPS13C-203ENST00000395896 RAB3GAP2Q9H2M9 1393 aa4.64□□□□□ -1.67
VPS13C-203ENST00000395896 NEFMP07197 916 aa4.63□□□□□ -1.67
VPS13C-203ENST00000395896 CHIC2Q9UKJ5 165 aa4.63□□□□□ -1.67
VPS13C-203ENST00000395896 PBRM1Q86U86 1689 aa4.63□□□□□ -1.67
VPS13C-203ENST00000395896 TROQ12816 1431 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-203ENST00000395896 ARID3CA6NKF2 412 aa4.63□□□□□ -1.67
VPS13C-203ENST00000395896 AKNAQ7Z591 1439 aa4.63□□□□□ -1.67
VPS13C-203ENST00000395896 UACAQ9BZF9 1416 aa4.63□□□□□ -1.67
VPS13C-203ENST00000395896 HDGFP51858 240 aaKnown RBP4.62□□□□□ -1.67
VPS13C-203ENST00000395896 KANK4Q5T7N3 995 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-203ENST00000395896 EPRSP07814 1512 aaKnown RBP4.62□□□□□ -1.67
VPS13C-203ENST00000395896 SNAPC4Q5SXM2 1469 aa4.62□□□□□ -1.67
VPS13C-203ENST00000395896 HFM1A2PYH4 1435 aa4.62□□□□□ -1.67
VPS13C-203ENST00000395896 NCOA2Q15596 1464 aa4.62□□□□□ -1.67
VPS13C-203ENST00000395896 UGGT2Q9NYU1 1516 aa4.62□□□□□ -1.67
VPS13C-203ENST00000395896 KCNH8Q96L42 1107 aa4.61□□□□□ -1.67
VPS13C-203ENST00000395896 RRP7BPQ9NSQ0 103 aa4.61□□□□□ -1.67
VPS13C-203ENST00000395896 ROCK2O75116 1388 aaKnown RBP4.6□□□□□ -1.67
VPS13C-203ENST00000395896 ROCK1Q13464 1354 aa4.6□□□□□ -1.67
VPS13C-203ENST00000395896 CFAP43Q8NDM7 1665 aa4.6□□□□□ -1.67
VPS13C-203ENST00000395896 ADAMTS12P58397 1594 aa4.6□□□□□ -1.67
VPS13C-203ENST00000395896 ZNF326Q5BKZ1 582 aaKnown RBP4.6□□□□□ -1.67
VPS13C-203ENST00000395896 KIF14Q15058 1648 aa4.6□□□□□ -1.67
VPS13C-203ENST00000395896 EIF4G3O43432 1585 aaKnown RBP4.6□□□□□ -1.67
VPS13C-203ENST00000395896 TARBP1Q13395 1621 aaKnown RBP4.6□□□□□ -1.67
VPS13C-203ENST00000395896 NUP155O75694 1391 aa4.59□□□□□ -1.67
VPS13C-203ENST00000395896 STAG3Q9UJ98 1225 aa4.59□□□□□ -1.67
VPS13C-203ENST00000395896 PRG4Q92954 1404 aaPredicted RBP4.59□□□□□ -1.67
VPS13C-203ENST00000395896 PCF11O94913 1555 aaKnown RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms