RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ARHGAP35Q9NRY4 1499 aa28.39■■■□□ 2.14
CCDC88C-203ENST00000389856 SYNJ2O15056 1496 aa28.38■■■□□ 2.13
CCDC88C-203ENST00000389856 ARAP1Q96P48 1450 aa28.38■■■□□ 2.13
CCDC88C-203ENST00000389856 PCGF6Q9BYE7 350 aa28.36■■■□□ 2.13
CCDC88C-203ENST00000389856 GRIN2AQ12879 1464 aa28.34■■■□□ 2.13
CCDC88C-203ENST00000389856 HRCP23327 699 aa28.32■■■□□ 2.12
CCDC88C-203ENST00000389856 TRIM26Q12899 539 aaPredicted RBP28.3■■■□□ 2.12
CCDC88C-203ENST00000389856 IQGAP2Q13576 1575 aa28.3■■■□□ 2.12
CCDC88C-203ENST00000389856 APLP2Q06481 763 aa28.29■■■□□ 2.12
CCDC88C-203ENST00000389856 CHMP7Q8WUX9 453 aaPredicted RBP28.29■■■□□ 2.12
CCDC88C-203ENST00000389856 KIAA0586Q9BVV6 1533 aa28.23■■■□□ 2.11
CCDC88C-203ENST00000389856 SAMD9Q5K651 1589 aa28.23■■■□□ 2.11
CCDC88C-203ENST00000389856 FMN1Q68DA7 1419 aa28.15■■■□□ 2.1
CCDC88C-203ENST00000389856 UGGT2Q9NYU1 1516 aa28.15■■■□□ 2.1
CCDC88C-203ENST00000389856 FBLN2P98095 1184 aa28.14■■■□□ 2.1
CCDC88C-203ENST00000389856 NUP160Q12769 1436 aa28.13■■■□□ 2.09
CCDC88C-203ENST00000389856 CEP170Q5SW79 1584 aa28.11■■■□□ 2.09
CCDC88C-203ENST00000389856 FHOD3Q2V2M9 1422 aa28.11■■■□□ 2.09
CCDC88C-203ENST00000389856 FYCO1Q9BQS8 1478 aa28.06■■■□□ 2.08
CCDC88C-203ENST00000389856 P3H3Q8IVL6 736 aa28.06■■■□□ 2.08
CCDC88C-203ENST00000389856 MAP3K1Q13233 1512 aa28.06■■■□□ 2.08
CCDC88C-203ENST00000389856 CHD1O14646 1710 aa28.05■■■□□ 2.08
CCDC88C-203ENST00000389856 PPARGC1BQ86YN6 1023 aaKnown RBP28.03■■■□□ 2.08
CCDC88C-203ENST00000389856 CASKIN1Q8WXD9 1431 aa28.02■■■□□ 2.08
CCDC88C-203ENST00000389856 PCF11O94913 1555 aaKnown RBP28.02■■■□□ 2.08
CCDC88C-203ENST00000389856 KIAA0556O60303 1618 aa27.98■■■□□ 2.07
CCDC88C-203ENST00000389856 CARMIL2Q6F5E8 1435 aa27.95■■■□□ 2.07
CCDC88C-203ENST00000389856 TIAM1Q13009 1591 aa27.95■■■□□ 2.07
CCDC88C-203ENST00000389856 CFAP43Q8NDM7 1665 aa27.94■■■□□ 2.06
CCDC88C-203ENST00000389856 DISP1Q96F81 1524 aa27.92■■■□□ 2.06
CCDC88C-203ENST00000389856 JPH4Q96JJ6 628 aa27.89■■■□□ 2.05
CCDC88C-203ENST00000389856 HECW1Q76N89 1606 aa27.86■■■□□ 2.05
CCDC88C-203ENST00000389856 TTBK1Q5TCY1 1321 aaPredicted RBP27.86■■■□□ 2.05
CCDC88C-203ENST00000389856 ATP1B4Q9UN42 357 aaPredicted RBP27.85■■■□□ 2.05
CCDC88C-203ENST00000389856 CCDC18Q5T9S5 1454 aa27.83■■■□□ 2.05
CCDC88C-203ENST00000389856 LRRC9Q6ZRR7 1453 aa27.8■■■□□ 2.04
CCDC88C-203ENST00000389856 SHROOM2Q13796 1616 aa27.78■■■□□ 2.04
CCDC88C-203ENST00000389856 KANK4Q5T7N3 995 aaPredicted RBP27.76■■■□□ 2.03
CCDC88C-203ENST00000389856 CLASP1Q7Z460 1538 aa27.73■■■□□ 2.03
CCDC88C-203ENST00000389856 RAPGEF6Q8TEU7 1601 aa27.73■■■□□ 2.03
CCDC88C-203ENST00000389856 PRG4Q92954 1404 aaPredicted RBP27.72■■■□□ 2.03
CCDC88C-203ENST00000389856 ZEB1P37275 1124 aaPredicted RBP27.72■■■□□ 2.03
CCDC88C-203ENST00000389856 LRRIQ1Q96JM4 1722 aa27.69■■■□□ 2.02
CCDC88C-203ENST00000389856 EPRSP07814 1512 aaKnown RBP27.66■■■□□ 2.02
CCDC88C-203ENST00000389856 MTUS2Q5JR59 1369 aa27.65■■■□□ 2.02
CCDC88C-203ENST00000389856 EHBP1L1Q8N3D4 1523 aa27.65■■■□□ 2.02
CCDC88C-203ENST00000389856 DNAJC5Q9H3Z4 198 aa27.62■■■□□ 2.01
CCDC88C-203ENST00000389856 RRBP1Q9P2E9 1410 aaKnown RBP27.59■■■□□ 2.01
CCDC88C-203ENST00000389856 PTPRGP23470 1445 aa27.58■■■□□ 2.01
CCDC88C-203ENST00000389856 SUPT6HQ7KZ85 1726 aaKnown RBP27.58■■■□□ 2.01
CCDC88C-203ENST00000389856 NUP153P49790 1475 aaKnown RBP27.58■■■□□ 2.01
CCDC88C-203ENST00000389856 ABCA8O94911 1581 aa27.57■■■□□ 2
CCDC88C-203ENST00000389856 CDK11AQ9UQ88 783 aaPredicted RBP27.56■■■□□ 2
CCDC88C-203ENST00000389856 PLB1Q6P1J6 1458 aa27.54■■■□□ 2
CCDC88C-203ENST00000389856 CDK13Q14004 1512 aaKnown RBP27.53■■■□□ 2
CCDC88C-203ENST00000389856 CCNB3Q8WWL7 1395 aa27.52■■■□□ 2
CCDC88C-203ENST00000389856 OSCARQ8IYS5 282 aa27.49■■□□□ 1.99
CCDC88C-203ENST00000389856 NCOA2Q15596 1464 aa27.45■■□□□ 1.99
CCDC88C-203ENST00000389856 PHLDB1Q86UU1 1377 aa27.45■■□□□ 1.98
CCDC88C-203ENST00000389856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.45■■□□□ 1.98
CCDC88C-203ENST00000389856 HNRNPUL2Q1KMD3 747 aaKnown RBP27.45■■□□□ 1.98
CCDC88C-203ENST00000389856 UACAQ9BZF9 1416 aa27.44■■□□□ 1.98
CCDC88C-203ENST00000389856 MAGI3Q5TCQ9 1506 aa27.43■■□□□ 1.98
CCDC88C-203ENST00000389856 ERCC6L2Q5T890 1561 aa27.41■■□□□ 1.98
CCDC88C-203ENST00000389856 ARHGEF11O15085 1522 aa27.41■■□□□ 1.98
CCDC88C-203ENST00000389856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.4■■□□□ 1.98
CCDC88C-203ENST00000389856 MYOM3Q5VTT5 1437 aa27.38■■□□□ 1.97
CCDC88C-203ENST00000389856 TROQ12816 1431 aaPredicted RBP27.37■■□□□ 1.97
CCDC88C-203ENST00000389856 ABCC2Q92887 1545 aa27.37■■□□□ 1.97
CCDC88C-203ENST00000389856 ARID3CA6NKF2 412 aa27.37■■□□□ 1.97
CCDC88C-203ENST00000389856 FGD6Q6ZV73 1430 aa27.36■■□□□ 1.97
CCDC88C-203ENST00000389856 ATP10BO94823 1461 aa27.34■■□□□ 1.97
CCDC88C-203ENST00000389856 ADCY10Q96PN6 1610 aa27.33■■□□□ 1.97
CCDC88C-203ENST00000389856 UHRF1BP1LA0JNW5 1464 aa27.33■■□□□ 1.96
CCDC88C-203ENST00000389856 PLEKHD1A6NEE1 506 aa27.31■■□□□ 1.96
CCDC88C-203ENST00000389856 MIA2Q96PC5 1412 aa27.28■■□□□ 1.96
CCDC88C-203ENST00000389856 FAM50AQ14320 339 aaKnown RBP27.27■■□□□ 1.96
CCDC88C-203ENST00000389856 KIF14Q15058 1648 aa27.26■■□□□ 1.95
CCDC88C-203ENST00000389856 ITSN2Q9NZM3 1697 aa27.25■■□□□ 1.95
CCDC88C-203ENST00000389856 PTPN23Q9H3S7 1636 aa27.24■■□□□ 1.95
CCDC88C-203ENST00000389856 TCOF1Q13428 1488 aaKnown RBP27.2■■□□□ 1.95
CCDC88C-203ENST00000389856 KDM5BQ9UGL1 1544 aa27.17■■□□□ 1.94
CCDC88C-203ENST00000389856 ZCCHC11Q5TAX3 1644 aaKnown RBP27.16■■□□□ 1.94
CCDC88C-203ENST00000389856 ITGAEP38570 1179 aa27.14■■□□□ 1.94
CCDC88C-203ENST00000389856 CCER1Q8TC90 406 aaPredicted RBP27.14■■□□□ 1.94
CCDC88C-203ENST00000389856 ABCC10Q5T3U5 1492 aa27.08■■□□□ 1.93
CCDC88C-203ENST00000389856 GPATCH8Q9UKJ3 1502 aaKnown RBP27.08■■□□□ 1.93
CCDC88C-203ENST00000389856 CDC42BPAQ5VT25 1732 aa27.05■■□□□ 1.92
CCDC88C-203ENST00000389856 CFDP1Q9UEE9 299 aaPredicted RBP27.05■■□□□ 1.92
CCDC88C-203ENST00000389856 SETD5Q9C0A6 1442 aa27.03■■□□□ 1.92
CCDC88C-203ENST00000389856 NPM1P06748 294 aaKnown RBP eCLIP26.98■■□□□ 1.91
CCDC88C-203ENST00000389856 PREX2Q70Z35 1606 aa26.98■■□□□ 1.91
CCDC88C-203ENST00000389856 CAMSAP2Q08AD1 1489 aa26.98■■□□□ 1.91
CCDC88C-203ENST00000389856 DNMT1P26358 1616 aaKnown RBP26.98■■□□□ 1.91
CCDC88C-203ENST00000389856 AKNAQ7Z591 1439 aa26.96■■□□□ 1.91
CCDC88C-203ENST00000389856 MYO5CQ9NQX4 1742 aa26.96■■□□□ 1.91
CCDC88C-203ENST00000389856 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.94■■□□□ 1.9
CCDC88C-203ENST00000389856 WDR7Q9Y4E6 1490 aa26.94■■□□□ 1.9
CCDC88C-203ENST00000389856 HFM1A2PYH4 1435 aa26.94■■□□□ 1.9
CCDC88C-203ENST00000389856 RAB3GAP2Q9H2M9 1393 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms