RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 BCL11AQ9H165 835 aa20.14■□□□□ 0.81
SDC1-202ENST00000381150 DNAJC5BQ9UF47 199 aa20.12■□□□□ 0.81
SDC1-202ENST00000381150 URB2Q14146 1524 aaKnown RBP20.11■□□□□ 0.81
SDC1-202ENST00000381150 ANP32EQ9BTT0 268 aa20.11■□□□□ 0.81
SDC1-202ENST00000381150 RRBP1Q9P2E9 1410 aaKnown RBP20.1■□□□□ 0.81
SDC1-202ENST00000381150 TSHZ2Q9NRE2 1034 aa20.09■□□□□ 0.81
SDC1-202ENST00000381150 WDR97A6NE52 1622 aa20.08■□□□□ 0.81
SDC1-202ENST00000381150 MAP3K1Q13233 1512 aa20.06■□□□□ 0.8
SDC1-202ENST00000381150 CUL7Q14999 1698 aa20.04■□□□□ 0.8
SDC1-202ENST00000381150 TIAM1Q13009 1591 aa20.02■□□□□ 0.8
SDC1-202ENST00000381150 PDS5BQ9NTI5 1447 aa19.99■□□□□ 0.79
SDC1-202ENST00000381150 ABCA5Q8WWZ7 1642 aa19.98■□□□□ 0.79
SDC1-202ENST00000381150 KIF21AQ7Z4S6 1674 aa19.98■□□□□ 0.79
SDC1-202ENST00000381150 ITGAEP38570 1179 aa19.97■□□□□ 0.79
SDC1-202ENST00000381150 CTTNBP2Q8WZ74 1663 aa19.95■□□□□ 0.78
SDC1-202ENST00000381150 CCNB3Q8WWL7 1395 aa19.95■□□□□ 0.78
SDC1-202ENST00000381150 FKBP8Q14318 412 aa19.94■□□□□ 0.78
SDC1-202ENST00000381150 KCNH8Q96L42 1107 aa19.94■□□□□ 0.78
SDC1-202ENST00000381150 FHAD1B1AJZ9 1412 aa19.94■□□□□ 0.78
SDC1-202ENST00000381150 LRRC9Q6ZRR7 1453 aa19.94■□□□□ 0.78
SDC1-202ENST00000381150 DHX57Q6P158 1386 aaKnown RBP19.93■□□□□ 0.78
SDC1-202ENST00000381150 PCF11O94913 1555 aaKnown RBP19.92■□□□□ 0.78
SDC1-202ENST00000381150 EFCAB5A4FU69 1503 aa19.92■□□□□ 0.78
SDC1-202ENST00000381150 TDRD9Q8NDG6 1382 aaKnown RBP19.92■□□□□ 0.78
SDC1-202ENST00000381150 CFAP43Q8NDM7 1665 aa19.91■□□□□ 0.78
SDC1-202ENST00000381150 CLSPNQ9HAW4 1339 aa19.9■□□□□ 0.78
SDC1-202ENST00000381150 GAPVD1Q14C86 1478 aa19.89■□□□□ 0.77
SDC1-202ENST00000381150 TARBP1Q13395 1621 aaKnown RBP19.89■□□□□ 0.77
SDC1-202ENST00000381150 FHOD3Q2V2M9 1422 aa19.89■□□□□ 0.77
SDC1-202ENST00000381150 P3H3Q8IVL6 736 aa19.89■□□□□ 0.77
SDC1-202ENST00000381150 AQRO60306 1485 aaKnown RBP eCLIP19.86■□□□□ 0.772e-7■■■■■ 33.9
SDC1-202ENST00000381150 PHLDB1Q86UU1 1377 aa19.85■□□□□ 0.77
SDC1-202ENST00000381150 FYCO1Q9BQS8 1478 aa19.84■□□□□ 0.77
SDC1-202ENST00000381150 CASKIN1Q8WXD9 1431 aa19.84■□□□□ 0.77
SDC1-202ENST00000381150 NEFLP07196 543 aa19.82■□□□□ 0.76
SDC1-202ENST00000381150 SAMD9Q5K651 1589 aa19.81■□□□□ 0.76
SDC1-202ENST00000381150 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
SDC1-202ENST00000381150 FMN1Q68DA7 1419 aa19.76■□□□□ 0.75
SDC1-202ENST00000381150 TRIM52Q96A61 297 aa19.75■□□□□ 0.75
SDC1-202ENST00000381150 ERICH6Q7L0X2 663 aa19.75■□□□□ 0.75
SDC1-202ENST00000381150 LRRIQ1Q96JM4 1722 aa19.73■□□□□ 0.75
SDC1-202ENST00000381150 PBRM1Q86U86 1689 aa19.73■□□□□ 0.75
SDC1-202ENST00000381150 HIRIP3Q9BW71 556 aaPredicted RBP19.73■□□□□ 0.75
SDC1-202ENST00000381150 RAB3GAP2Q9H2M9 1393 aa19.73■□□□□ 0.75
SDC1-202ENST00000381150 DDX10Q13206 875 aaKnown RBP19.72■□□□□ 0.75
SDC1-202ENST00000381150 MRC2Q9UBG0 1479 aa19.72■□□□□ 0.75
SDC1-202ENST00000381150 RBM19Q9Y4C8 960 aaKnown RBP19.71■□□□□ 0.75
SDC1-202ENST00000381150 ATP1B4Q9UN42 357 aaPredicted RBP19.7■□□□□ 0.74
SDC1-202ENST00000381150 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.68■□□□□ 0.749e-6■■■■□ 19.8
SDC1-202ENST00000381150 GRIN2BQ13224 1484 aa19.68■□□□□ 0.74
SDC1-202ENST00000381150 SETD5Q9C0A6 1442 aa19.68■□□□□ 0.74
SDC1-202ENST00000381150 MAPKBP1O60336 1514 aa19.67■□□□□ 0.74
SDC1-202ENST00000381150 ADAMTS12P58397 1594 aa19.65■□□□□ 0.74
SDC1-202ENST00000381150 IRX6P78412 446 aaPredicted RBP19.63■□□□□ 0.73
SDC1-202ENST00000381150 FAM50AQ14320 339 aaKnown RBP19.63■□□□□ 0.73
SDC1-202ENST00000381150 THOC2Q8NI27 1593 aaKnown RBP19.62■□□□□ 0.73
SDC1-202ENST00000381150 WDR62O43379 1518 aa19.61■□□□□ 0.73
SDC1-202ENST00000381150 FGD6Q6ZV73 1430 aa19.59■□□□□ 0.73
SDC1-202ENST00000381150 ZNF608Q9ULD9 1512 aaPredicted RBP19.58■□□□□ 0.73
SDC1-202ENST00000381150 IQGAP2Q13576 1575 aa19.58■□□□□ 0.72
SDC1-202ENST00000381150 IFT140Q96RY7 1462 aa19.58■□□□□ 0.72
SDC1-202ENST00000381150 MTUS2Q5JR59 1369 aa19.56■□□□□ 0.72
SDC1-202ENST00000381150 MAGI3Q5TCQ9 1506 aa19.54■□□□□ 0.72
SDC1-202ENST00000381150 NCOA2Q15596 1464 aa19.54■□□□□ 0.72
SDC1-202ENST00000381150 ARHGEF11O15085 1522 aa19.54■□□□□ 0.72
SDC1-202ENST00000381150 PTPRKQ15262 1439 aa19.52■□□□□ 0.72
SDC1-202ENST00000381150 EHBP1L1Q8N3D4 1523 aa19.51■□□□□ 0.71
SDC1-202ENST00000381150 SUPT6HQ7KZ85 1726 aaKnown RBP19.51■□□□□ 0.71
SDC1-202ENST00000381150 UGGT2Q9NYU1 1516 aa19.51■□□□□ 0.71
SDC1-202ENST00000381150 MYOM3Q5VTT5 1437 aa19.5■□□□□ 0.71
SDC1-202ENST00000381150 CCDC18Q5T9S5 1454 aa19.48■□□□□ 0.71
SDC1-202ENST00000381150 HECW1Q76N89 1606 aa19.47■□□□□ 0.71
SDC1-202ENST00000381150 EPRSP07814 1512 aaKnown RBP19.45■□□□□ 0.7
SDC1-202ENST00000381150 EIF4G3O43432 1585 aaKnown RBP19.45■□□□□ 0.7
SDC1-202ENST00000381150 SIN3AQ96ST3 1273 aa19.45■□□□□ 0.7
SDC1-202ENST00000381150 HFM1A2PYH4 1435 aa19.44■□□□□ 0.7
SDC1-202ENST00000381150 KIAA0586Q9BVV6 1533 aa19.44■□□□□ 0.7
SDC1-202ENST00000381150 MSH5O43196 834 aa19.43■□□□□ 0.7
SDC1-202ENST00000381150 PTPN23Q9H3S7 1636 aa19.42■□□□□ 0.7
SDC1-202ENST00000381150 ANP32CO43423 234 aa19.42■□□□□ 0.7
SDC1-202ENST00000381150 DISP1Q96F81 1524 aa19.42■□□□□ 0.7
SDC1-202ENST00000381150 CDK11AQ9UQ88 783 aaPredicted RBP19.4■□□□□ 0.7
SDC1-202ENST00000381150 GRIN2AQ12879 1464 aa19.4■□□□□ 0.7
SDC1-202ENST00000381150 TCOF1Q13428 1488 aaKnown RBP19.4■□□□□ 0.7
SDC1-202ENST00000381150 NAIPQ13075 1403 aa19.4■□□□□ 0.7
SDC1-202ENST00000381150 CDK13Q14004 1512 aaKnown RBP19.39■□□□□ 0.69
SDC1-202ENST00000381150 KIAA0556O60303 1618 aa19.39■□□□□ 0.69
SDC1-202ENST00000381150 TIMELESSQ9UNS1 1208 aa19.38■□□□□ 0.69
SDC1-202ENST00000381150 CNGB1Q14028 1251 aaPredicted RBP19.36■□□□□ 0.69
SDC1-202ENST00000381150 NBR1Q14596 966 aa19.36■□□□□ 0.69
SDC1-202ENST00000381150 ERCC6Q03468 1493 aa19.35■□□□□ 0.69
SDC1-202ENST00000381150 UACAQ9BZF9 1416 aa19.35■□□□□ 0.69
SDC1-202ENST00000381150 HNRNPUQ00839 825 aaKnown RBP eCLIP19.35■□□□□ 0.69
SDC1-202ENST00000381150 MAGI1Q96QZ7 1491 aaPredicted RBP19.33■□□□□ 0.69
SDC1-202ENST00000381150 MIA2Q96PC5 1412 aa19.31■□□□□ 0.68
SDC1-202ENST00000381150 NUP153P49790 1475 aaKnown RBP19.31■□□□□ 0.68
SDC1-202ENST00000381150 CEP170Q5SW79 1584 aa19.3■□□□□ 0.68
SDC1-202ENST00000381150 PPP1R15AO75807 674 aaPredicted RBP19.29■□□□□ 0.68
SDC1-202ENST00000381150 SYNJ2O15056 1496 aa19.29■□□□□ 0.68
SDC1-202ENST00000381150 RAPGEF6Q8TEU7 1601 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms