RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 GAPVD1Q14C86 1478 aa35.09■■■■□ 3.21
VPS16-201ENST00000380443 MAP3K1Q13233 1512 aa35.06■■■■□ 3.2
VPS16-201ENST00000380443 CCER1Q8TC90 406 aaPredicted RBP35.05■■■■□ 3.2
VPS16-201ENST00000380443 GRIN2BQ13224 1484 aa35.03■■■■□ 3.2
VPS16-201ENST00000380443 EFCAB5A4FU69 1503 aa35.02■■■■□ 3.2
VPS16-201ENST00000380443 FHAD1B1AJZ9 1412 aa35.01■■■■□ 3.19
VPS16-201ENST00000380443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.99■■■■□ 3.19
VPS16-201ENST00000380443 CTTNBP2Q8WZ74 1663 aa34.99■■■■□ 3.19
VPS16-201ENST00000380443 PBRM1Q86U86 1689 aa34.95■■■■□ 3.19
VPS16-201ENST00000380443 SNAPC4Q5SXM2 1469 aa34.92■■■■□ 3.18
VPS16-201ENST00000380443 MAGI1Q96QZ7 1491 aaPredicted RBP34.92■■■■□ 3.18
VPS16-201ENST00000380443 KANK4Q5T7N3 995 aaPredicted RBP34.87■■■■□ 3.17
VPS16-201ENST00000380443 DNAJC5Q9H3Z4 198 aa34.86■■■■□ 3.17
VPS16-201ENST00000380443 OSCARQ8IYS5 282 aa34.85■■■■□ 3.17
VPS16-201ENST00000380443 TIAM1Q13009 1591 aa34.83■■■■□ 3.17
VPS16-201ENST00000380443 RRBP1Q9P2E9 1410 aaKnown RBP34.82■■■■□ 3.16
VPS16-201ENST00000380443 FBLN2P98095 1184 aa34.81■■■■□ 3.16
VPS16-201ENST00000380443 CHD1O14646 1710 aa34.77■■■■□ 3.16
VPS16-201ENST00000380443 SYNJ2O15056 1496 aa34.77■■■■□ 3.16
VPS16-201ENST00000380443 CHMP7Q8WUX9 453 aaPredicted RBP34.77■■■■□ 3.16
VPS16-201ENST00000380443 HNRNPUL2Q1KMD3 747 aaKnown RBP34.74■■■■□ 3.15
VPS16-201ENST00000380443 FYCO1Q9BQS8 1478 aa34.74■■■■□ 3.15
VPS16-201ENST00000380443 FMN1Q68DA7 1419 aa34.72■■■■□ 3.15
VPS16-201ENST00000380443 CASKIN1Q8WXD9 1431 aa34.72■■■■□ 3.15
VPS16-201ENST00000380443 CFAP43Q8NDM7 1665 aa34.7■■■■□ 3.15
VPS16-201ENST00000380443 SAMD9Q5K651 1589 aa34.7■■■■□ 3.14
VPS16-201ENST00000380443 LRRC9Q6ZRR7 1453 aa34.69■■■■□ 3.14
VPS16-201ENST00000380443 PCF11O94913 1555 aaKnown RBP34.69■■■■□ 3.14
VPS16-201ENST00000380443 ADAMTS12P58397 1594 aa34.69■■■■□ 3.14
VPS16-201ENST00000380443 FHOD3Q2V2M9 1422 aa34.68■■■■□ 3.14
VPS16-201ENST00000380443 CCNB3Q8WWL7 1395 aa34.63■■■■□ 3.13
VPS16-201ENST00000380443 P3H3Q8IVL6 736 aa34.6■■■■□ 3.13
VPS16-201ENST00000380443 GRIN2AQ12879 1464 aa34.56■■■■□ 3.12
VPS16-201ENST00000380443 CLSPNQ9HAW4 1339 aa34.48■■■■□ 3.11
VPS16-201ENST00000380443 IQGAP2Q13576 1575 aa34.47■■■■□ 3.11
VPS16-201ENST00000380443 CLASP1Q7Z460 1538 aa34.4■■■■□ 3.1
VPS16-201ENST00000380443 ATP1B4Q9UN42 357 aaPredicted RBP34.39■■■■□ 3.1
VPS16-201ENST00000380443 NUP160Q12769 1436 aa34.39■■■■□ 3.1
VPS16-201ENST00000380443 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.37■■■■□ 3.09
VPS16-201ENST00000380443 PHLDB1Q86UU1 1377 aa34.36■■■■□ 3.09
VPS16-201ENST00000380443 UGGT2Q9NYU1 1516 aa34.36■■■■□ 3.09
VPS16-201ENST00000380443 CEP170Q5SW79 1584 aa34.35■■■■□ 3.09
VPS16-201ENST00000380443 KIAA0586Q9BVV6 1533 aa34.32■■■■□ 3.08
VPS16-201ENST00000380443 CCDC18Q5T9S5 1454 aa34.29■■■■□ 3.08
VPS16-201ENST00000380443 DHX57Q6P158 1386 aaKnown RBP34.25■■■■□ 3.07
VPS16-201ENST00000380443 MTUS2Q5JR59 1369 aa34.24■■■■□ 3.07
VPS16-201ENST00000380443 ARHGEF11O15085 1522 aa34.23■■■■□ 3.07
VPS16-201ENST00000380443 HECW1Q76N89 1606 aa34.22■■■■□ 3.07
VPS16-201ENST00000380443 RIMBP3CA6NJZ7 1639 aa34.2■■■■□ 3.07
VPS16-201ENST00000380443 RIMBP3BA6NNM3 1639 aa34.2■■■■□ 3.07
VPS16-201ENST00000380443 RIMBP3Q9UFD9 1639 aa34.2■■■■□ 3.07
VPS16-201ENST00000380443 EHBP1L1Q8N3D4 1523 aa34.2■■■■□ 3.07
VPS16-201ENST00000380443 LRRIQ1Q96JM4 1722 aa34.19■■■■□ 3.06
VPS16-201ENST00000380443 SUPT6HQ7KZ85 1726 aaKnown RBP34.13■■■■□ 3.05
VPS16-201ENST00000380443 FGD6Q6ZV73 1430 aa34.12■■■■□ 3.05
VPS16-201ENST00000380443 SETD5Q9C0A6 1442 aa34.12■■■■□ 3.05
VPS16-201ENST00000380443 FAM50AQ14320 339 aaKnown RBP34.1■■■■□ 3.05
VPS16-201ENST00000380443 KIAA0556O60303 1618 aa34.1■■■■□ 3.05
VPS16-201ENST00000380443 SHROOM2Q13796 1616 aa34.09■■■■□ 3.05
VPS16-201ENST00000380443 ITGAEP38570 1179 aa34.07■■■■□ 3.04
VPS16-201ENST00000380443 JPH4Q96JJ6 628 aa34.07■■■■□ 3.04
VPS16-201ENST00000380443 NCOA2Q15596 1464 aa34.07■■■■□ 3.04
VPS16-201ENST00000380443 DISP1Q96F81 1524 aa34.06■■■■□ 3.04
VPS16-201ENST00000380443 RAB3GAP2Q9H2M9 1393 aa34.06■■■■□ 3.04
VPS16-201ENST00000380443 EPRSP07814 1512 aaKnown RBP34.05■■■■□ 3.04
VPS16-201ENST00000380443 MYOM3Q5VTT5 1437 aa34.04■■■■□ 3.04
VPS16-201ENST00000380443 ZNF316A6NFI3 1004 aaPredicted RBP34.02■■■■□ 3.04
VPS16-201ENST00000380443 PRG4Q92954 1404 aaPredicted RBP33.97■■■■□ 3.03
VPS16-201ENST00000380443 MAGI3Q5TCQ9 1506 aa33.92■■■■□ 3.02
VPS16-201ENST00000380443 CYB5RLQ6IPT4 315 aa33.92■■■■□ 3.02
VPS16-201ENST00000380443 ERCC6L2Q5T890 1561 aa33.91■■■■□ 3.02
VPS16-201ENST00000380443 CARMIL2Q6F5E8 1435 aa33.89■■■■□ 3.02
VPS16-201ENST00000380443 DIEXFQ68CQ4 756 aaKnown RBP33.88■■■■□ 3.01
VPS16-201ENST00000380443 RAPGEF6Q8TEU7 1601 aa33.88■■■■□ 3.01
VPS16-201ENST00000380443 TCOF1Q13428 1488 aaKnown RBP33.86■■■■□ 3.01
VPS16-201ENST00000380443 MIA2Q96PC5 1412 aa33.85■■■■□ 3.01
VPS16-201ENST00000380443 PTPN23Q9H3S7 1636 aa33.84■■■■□ 3.01
VPS16-201ENST00000380443 CDK13Q14004 1512 aaKnown RBP33.83■■■■□ 3.01
VPS16-201ENST00000380443 CDK11AQ9UQ88 783 aaPredicted RBP33.81■■■■□ 3
VPS16-201ENST00000380443 NUP153P49790 1475 aaKnown RBP33.8■■■■□ 3
VPS16-201ENST00000380443 HFM1A2PYH4 1435 aa33.79■■■■□ 3
VPS16-201ENST00000380443 MAPKBP1O60336 1514 aa33.78■■■■□ 3
VPS16-201ENST00000380443 PTPRKQ15262 1439 aa33.69■■■□□ 2.98
VPS16-201ENST00000380443 TIMELESSQ9UNS1 1208 aa33.69■■■□□ 2.98
VPS16-201ENST00000380443 AKNAQ7Z591 1439 aa33.67■■■□□ 2.98
VPS16-201ENST00000380443 NAIPQ13075 1403 aa33.63■■■□□ 2.97
VPS16-201ENST00000380443 ACIN1Q9UKV3 1341 aaKnown RBP33.62■■■□□ 2.97
VPS16-201ENST00000380443 PTPRGP23470 1445 aa33.62■■■□□ 2.97
VPS16-201ENST00000380443 TROQ12816 1431 aaPredicted RBP33.61■■■□□ 2.97
VPS16-201ENST00000380443 UACAQ9BZF9 1416 aa33.6■■■□□ 2.97
VPS16-201ENST00000380443 PLB1Q6P1J6 1458 aa33.58■■■□□ 2.97
VPS16-201ENST00000380443 ABCA8O94911 1581 aa33.57■■■□□ 2.96
VPS16-201ENST00000380443 ADCY10Q96PN6 1610 aa33.54■■■□□ 2.96
VPS16-201ENST00000380443 GCC2Q8IWJ2 1684 aa33.53■■■□□ 2.96
VPS16-201ENST00000380443 ARID3CA6NKF2 412 aa33.5■■■□□ 2.95
VPS16-201ENST00000380443 ITSN2Q9NZM3 1697 aa33.48■■■□□ 2.95
VPS16-201ENST00000380443 ROCK1Q13464 1354 aa33.47■■■□□ 2.95
VPS16-201ENST00000380443 DNMT1P26358 1616 aaKnown RBP33.43■■■□□ 2.94
VPS16-201ENST00000380443 DAPK1P53355 1430 aa33.4■■■□□ 2.94
VPS16-201ENST00000380443 NPM1P06748 294 aaKnown RBP eCLIP33.39■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms