RNA–Protein interactions for RNA: ENST00000378536.4

SKI-201, Transcript of SKI proto-oncogene, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKI, Length 5,613 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKI-201ENST00000378536 ACIN1Q9UKV3 1341 aaKnown RBP29.26■■■□□ 2.27
SKI-201ENST00000378536 FANCD2Q9BXW9 1451 aa29.24■■■□□ 2.27
SKI-201ENST00000378536 DAXXQ9UER7 740 aaPredicted RBP29.19■■■□□ 2.26
SKI-201ENST00000378536 KDM2AQ9Y2K7 1162 aa29.19■■■□□ 2.26
SKI-201ENST00000378536 CARMIL2Q6F5E8 1435 aa29.17■■■□□ 2.26
SKI-201ENST00000378536 CCNB3Q8WWL7 1395 aa29.17■■■□□ 2.26
SKI-201ENST00000378536 NEFMP07197 916 aa29.16■■■□□ 2.26
SKI-201ENST00000378536 NCAPD3P42695 1498 aa29.15■■■□□ 2.26
SKI-201ENST00000378536 VPS8Q8N3P4 1428 aa29.15■■■□□ 2.26
SKI-201ENST00000378536 RAPGEF2Q9Y4G8 1499 aa29.11■■■□□ 2.25
SKI-201ENST00000378536 DDX10Q13206 875 aaKnown RBP29.07■■■□□ 2.24
SKI-201ENST00000378536 CLSPNQ9HAW4 1339 aa29.04■■■□□ 2.24
SKI-201ENST00000378536 FMN1Q68DA7 1419 aa29.03■■■□□ 2.24
SKI-201ENST00000378536 ARHGAP35Q9NRY4 1499 aa28.95■■■□□ 2.22
SKI-201ENST00000378536 SLC24A1O60721 1099 aa28.94■■■□□ 2.22
SKI-201ENST00000378536 ARID4BQ4LE39 1312 aaPredicted RBP28.93■■■□□ 2.22
SKI-201ENST00000378536 EIF4G2P78344 907 aaKnown RBP eCLIP28.92■■■□□ 2.221e-6■■■■□ 21.6
SKI-201ENST00000378536 CANXP27824 592 aaKnown RBP28.91■■■□□ 2.22
SKI-201ENST00000378536 RGL3Q3MIN7 710 aa28.9■■■□□ 2.22
SKI-201ENST00000378536 KANK4Q5T7N3 995 aaPredicted RBP28.89■■■□□ 2.22
SKI-201ENST00000378536 PPP1R15AO75807 674 aaPredicted RBP28.87■■■□□ 2.21
SKI-201ENST00000378536 FGD5Q6ZNL6 1462 aa28.86■■■□□ 2.21
SKI-201ENST00000378536 RUSC2Q8N2Y8 1516 aa28.86■■■□□ 2.21
SKI-201ENST00000378536 GTF3C3Q9Y5Q9 886 aa28.85■■■□□ 2.21
SKI-201ENST00000378536 FHOD3Q2V2M9 1422 aa28.83■■■□□ 2.21
SKI-201ENST00000378536 HIRIP3Q9BW71 556 aaPredicted RBP28.83■■■□□ 2.2
SKI-201ENST00000378536 JPH4Q96JJ6 628 aa28.79■■■□□ 2.2
SKI-201ENST00000378536 FAM9BQ8IZU0 186 aa28.78■■■□□ 2.2
SKI-201ENST00000378536 ZBTB47Q9UFB7 747 aaPredicted RBP28.77■■■□□ 2.2
SKI-201ENST00000378536 CC2D2AQ9P2K1 1620 aa28.76■■■□□ 2.19
SKI-201ENST00000378536 TMC1Q8TDI8 760 aa28.75■■■□□ 2.19
SKI-201ENST00000378536 SENP3Q9H4L4 574 aaPredicted RBP28.75■■■□□ 2.19
SKI-201ENST00000378536 GAPVD1Q14C86 1478 aa28.74■■■□□ 2.19
SKI-201ENST00000378536 RAD54L2Q9Y4B4 1467 aa28.73■■■□□ 2.19
SKI-201ENST00000378536 HNRNPUQ00839 825 aaKnown RBP eCLIP28.72■■■□□ 2.19
SKI-201ENST00000378536 SIN3AQ96ST3 1273 aa28.71■■■□□ 2.19
SKI-201ENST00000378536 HMGXB3Q12766 1538 aa28.7■■■□□ 2.18
SKI-201ENST00000378536 KANK1Q14678 1352 aa28.69■■■□□ 2.18
SKI-201ENST00000378536 SETD5Q9C0A6 1442 aa28.69■■■□□ 2.18
SKI-201ENST00000378536 TRHP20396 242 aaPredicted RBP28.68■■■□□ 2.18
SKI-201ENST00000378536 CFTRP13569 1480 aa28.68■■■□□ 2.18
SKI-201ENST00000378536 IGF1RP08069 1367 aa28.66■■■□□ 2.18
SKI-201ENST00000378536 EFCAB2Q5VUJ9 269 aa28.65■■■□□ 2.18
SKI-201ENST00000378536 CARD11Q9BXL7 1154 aa28.64■■■□□ 2.18
SKI-201ENST00000378536 MRS2Q9HD23 443 aa28.63■■■□□ 2.17
SKI-201ENST00000378536 WDR43Q15061 677 aaKnown RBP eCLIP28.62■■■□□ 2.17
SKI-201ENST00000378536 CCDC18Q5T9S5 1454 aa28.59■■■□□ 2.17
SKI-201ENST00000378536 BICRAQ9NZM4 1560 aa28.59■■■□□ 2.17
SKI-201ENST00000378536 CDCA8Q53HL2 280 aa28.57■■■□□ 2.16
SKI-201ENST00000378536 SALL2Q9Y467 1007 aaPredicted RBP28.55■■■□□ 2.16
SKI-201ENST00000378536 NESP48681 1621 aa28.54■■■□□ 2.16
SKI-201ENST00000378536 MIER1Q8N108 512 aa28.53■■■□□ 2.16
SKI-201ENST00000378536 ANKRD30AQ9BXX3 1397 aa28.51■■■□□ 2.16
SKI-201ENST00000378536 AQRO60306 1485 aaKnown RBP eCLIP28.51■■■□□ 2.158e-7■■■■■ 27.1
SKI-201ENST00000378536 PTPRGP23470 1445 aa28.5■■■□□ 2.15
SKI-201ENST00000378536 C14orf37Q86TY3 774 aa28.49■■■□□ 2.15
SKI-201ENST00000378536 MLECQ14165 292 aa28.49■■■□□ 2.15
SKI-201ENST00000378536 TIMELESSQ9UNS1 1208 aa28.49■■■□□ 2.15
SKI-201ENST00000378536 BCL11AQ9H165 835 aa28.47■■■□□ 2.15
SKI-201ENST00000378536 GGT6Q6P531 493 aa28.47■■■□□ 2.15
SKI-201ENST00000378536 DCAF11Q8TEB1 546 aa28.46■■■□□ 2.15
SKI-201ENST00000378536 PKD2Q13563 968 aa28.46■■■□□ 2.15
SKI-201ENST00000378536 OSCARQ8IYS5 282 aa28.45■■■□□ 2.14
SKI-201ENST00000378536 RAB3GAP2Q9H2M9 1393 aa28.45■■■□□ 2.14
SKI-201ENST00000378536 MRC2Q9UBG0 1479 aa28.44■■■□□ 2.14
SKI-201ENST00000378536 SCAF1Q9H7N4 1312 aaKnown RBP28.42■■■□□ 2.14
SKI-201ENST00000378536 HNRNPMP52272 730 aaKnown RBP eCLIP28.42■■■□□ 2.144e-7■■■■□ 26.1
SKI-201ENST00000378536 RSPH4AQ5TD94 716 aa28.42■■■□□ 2.14
SKI-201ENST00000378536 SYNJ1O43426 1573 aa28.42■■■□□ 2.14
SKI-201ENST00000378536 KNSTRNQ9Y448 316 aa28.4■■■□□ 2.14
SKI-201ENST00000378536 POGKQ9P215 609 aa28.39■■■□□ 2.14
SKI-201ENST00000378536 GRIN2BQ13224 1484 aa28.38■■■□□ 2.13
SKI-201ENST00000378536 NUP155O75694 1391 aa28.38■■■□□ 2.13
SKI-201ENST00000378536 FKBP8Q14318 412 aa28.37■■■□□ 2.13
SKI-201ENST00000378536 MPHOSPH9Q99550 1183 aa28.37■■■□□ 2.13
SKI-201ENST00000378536 FOXD1Q16676 465 aa28.34■■■□□ 2.13
SKI-201ENST00000378536 HDGFP51858 240 aaKnown RBP28.33■■■□□ 2.13
SKI-201ENST00000378536 SPAG9O60271 1321 aaKnown RBP28.32■■■□□ 2.12
SKI-201ENST00000378536 TOPBP1Q92547 1522 aa28.32■■■□□ 2.12
SKI-201ENST00000378536 TOP2BQ02880 1626 aa28.3■■■□□ 2.12
SKI-201ENST00000378536 IFT140Q96RY7 1462 aa28.29■■■□□ 2.12
SKI-201ENST00000378536 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.29■■■□□ 2.12
SKI-201ENST00000378536 ZBTB7CA1YPR0 619 aa28.28■■■□□ 2.12
SKI-201ENST00000378536 CFAP53Q96M91 514 aa28.27■■■□□ 2.12
SKI-201ENST00000378536 KIF3BO15066 747 aa28.27■■■□□ 2.12
SKI-201ENST00000378536 CUX1P39880 1505 aa28.27■■■□□ 2.12
SKI-201ENST00000378536 RTL5Q5HYW3 569 aaPredicted RBP28.27■■■□□ 2.12
SKI-201ENST00000378536 KIF21BO75037 1637 aa28.25■■■□□ 2.11
SKI-201ENST00000378536 PLEKHG5O94827 1062 aa28.24■■■□□ 2.11
SKI-201ENST00000378536 TMF1P82094 1093 aa28.24■■■□□ 2.11
SKI-201ENST00000378536 ERICH3Q5RHP9 1530 aa28.23■■■□□ 2.11
SKI-201ENST00000378536 CYB5RLQ6IPT4 315 aa28.22■■■□□ 2.11
SKI-201ENST00000378536 POLA1P09884 1462 aaPredicted RBP28.22■■■□□ 2.11
SKI-201ENST00000378536 DNMBPQ6XZF7 1577 aa28.19■■■□□ 2.1
SKI-201ENST00000378536 MYT1Q01538 1121 aa28.16■■■□□ 2.1
SKI-201ENST00000378536 UNC13AQ9UPW8 1703 aa28.15■■■□□ 2.1
SKI-201ENST00000378536 PPM1GO15355 546 aaPredicted RBP28.13■■■□□ 2.09
SKI-201ENST00000378536 LAMC3Q9Y6N6 1575 aa28.13■■■□□ 2.09
SKI-201ENST00000378536 HSPA5P11021 654 aaKnown RBP28.11■■■□□ 2.09
SKI-201ENST00000378536 WASHC2CQ9Y4E1 1318 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms