RNA–Protein interactions for RNA: ENST00000372396.3

KDM4A-201, Transcript of lysine demethylase 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM4A, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4A-201ENST00000372396 IGF1RP08069 1367 aa14.23□□□□□ -0.13
KDM4A-201ENST00000372396 EIF5BO60841 1220 aaKnown RBP14.23□□□□□ -0.13
KDM4A-201ENST00000372396 MYT1LQ9UL68 1186 aa14.23□□□□□ -0.13
KDM4A-201ENST00000372396 ERICH3Q5RHP9 1530 aa14.22□□□□□ -0.13
KDM4A-201ENST00000372396 CLSPNQ9HAW4 1339 aa14.2□□□□□ -0.14
KDM4A-201ENST00000372396 FMN1Q68DA7 1419 aa14.18□□□□□ -0.14
KDM4A-201ENST00000372396 NESP48681 1621 aa14.18□□□□□ -0.14
KDM4A-201ENST00000372396 RAD54L2Q9Y4B4 1467 aa14.17□□□□□ -0.14
KDM4A-201ENST00000372396 LAMC3Q9Y6N6 1575 aa14.17□□□□□ -0.14
KDM4A-201ENST00000372396 ZNF316A6NFI3 1004 aaPredicted RBP14.16□□□□□ -0.14
KDM4A-201ENST00000372396 DNMBPQ6XZF7 1577 aa14.16□□□□□ -0.14
KDM4A-201ENST00000372396 TOPBP1Q92547 1522 aa14.15□□□□□ -0.14
KDM4A-201ENST00000372396 GAPVD1Q14C86 1478 aa14.15□□□□□ -0.14
KDM4A-201ENST00000372396 PRXQ9BXM0 1461 aa14.14□□□□□ -0.15
KDM4A-201ENST00000372396 ZNF777Q9ULD5 760 aaPredicted RBP14.14□□□□□ -0.15
KDM4A-201ENST00000372396 CCNB3Q8WWL7 1395 aa14.13□□□□□ -0.15
KDM4A-201ENST00000372396 BIVM-ERCC5R4GMW8 1640 aa14.13□□□□□ -0.15
KDM4A-201ENST00000372396 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
KDM4A-201ENST00000372396 MRC2Q9UBG0 1479 aa14.1□□□□□ -0.15
KDM4A-201ENST00000372396 KANK4Q5T7N3 995 aaPredicted RBP14.09□□□□□ -0.15
KDM4A-201ENST00000372396 PLEKHD1A6NEE1 506 aa14.08□□□□□ -0.15
KDM4A-201ENST00000372396 ANO8Q9HCE9 1232 aaPredicted RBP14.08□□□□□ -0.16
KDM4A-201ENST00000372396 TSHZ2Q9NRE2 1034 aa14.08□□□□□ -0.16
KDM4A-201ENST00000372396 FHOD3Q2V2M9 1422 aa14.07□□□□□ -0.16
KDM4A-201ENST00000372396 CARMIL2Q6F5E8 1435 aa14.07□□□□□ -0.16
KDM4A-201ENST00000372396 NEFLP07196 543 aa14.06□□□□□ -0.16
KDM4A-201ENST00000372396 ARHGAP35Q9NRY4 1499 aa14.06□□□□□ -0.16
KDM4A-201ENST00000372396 ABCA10Q8WWZ4 1543 aa14.04□□□□□ -0.16
KDM4A-201ENST00000372396 CHIC2Q9UKJ5 165 aa14.03□□□□□ -0.16
KDM4A-201ENST00000372396 TONSLQ96HA7 1378 aa14.02□□□□□ -0.16
KDM4A-201ENST00000372396 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.16
KDM4A-201ENST00000372396 GRIN2BQ13224 1484 aa14.01□□□□□ -0.17
KDM4A-201ENST00000372396 IFT140Q96RY7 1462 aa14.01□□□□□ -0.17
KDM4A-201ENST00000372396 TSPY4P0CV99 314 aa14.01□□□□□ -0.17
KDM4A-201ENST00000372396 TSPY10P0CW01 314 aa14.01□□□□□ -0.17
KDM4A-201ENST00000372396 SUPT16HQ9Y5B9 1047 aaKnown RBP13.99□□□□□ -0.17
KDM4A-201ENST00000372396 BCANQ96GW7 911 aa13.98□□□□□ -0.17
KDM4A-201ENST00000372396 CFDP1Q9UEE9 299 aaPredicted RBP13.98□□□□□ -0.17
KDM4A-201ENST00000372396 AQRO60306 1485 aaKnown RBP eCLIP13.98□□□□□ -0.173e-7■■■■■ 38.7
KDM4A-201ENST00000372396 EFCAB5A4FU69 1503 aa13.96□□□□□ -0.17
KDM4A-201ENST00000372396 ARAP1Q96P48 1450 aa13.95□□□□□ -0.18
KDM4A-201ENST00000372396 RRP7BPQ9NSQ0 103 aa13.95□□□□□ -0.18
KDM4A-201ENST00000372396 POLR3GLQ9BT43 218 aa13.94□□□□□ -0.18
KDM4A-201ENST00000372396 SETD5Q9C0A6 1442 aa13.94□□□□□ -0.18
KDM4A-201ENST00000372396 CUL7Q14999 1698 aa13.93□□□□□ -0.18
KDM4A-201ENST00000372396 URB2Q14146 1524 aaKnown RBP13.93□□□□□ -0.18
KDM4A-201ENST00000372396 CCDC136Q96JN2 1154 aa13.93□□□□□ -0.18
KDM4A-201ENST00000372396 RTL5Q5HYW3 569 aaPredicted RBP13.93□□□□□ -0.18
KDM4A-201ENST00000372396 DNAJC5BQ9UF47 199 aa13.92□□□□□ -0.18
KDM4A-201ENST00000372396 JPH4Q96JJ6 628 aa13.92□□□□□ -0.18
KDM4A-201ENST00000372396 DEKP35659 375 aaKnown RBP13.91□□□□□ -0.18
KDM4A-201ENST00000372396 UBE2Q2Q8WVN8 375 aa13.91□□□□□ -0.18
KDM4A-201ENST00000372396 CASKIN1Q8WXD9 1431 aa13.91□□□□□ -0.18
KDM4A-201ENST00000372396 ERICH6BQ5W0A0 696 aa13.9□□□□□ -0.18
KDM4A-201ENST00000372396 CCDC18Q5T9S5 1454 aa13.9□□□□□ -0.19
KDM4A-201ENST00000372396 PRDM2Q13029 1718 aa13.89□□□□□ -0.19
KDM4A-201ENST00000372396 GLIPR1L2Q4G1C9 344 aa13.89□□□□□ -0.19
KDM4A-201ENST00000372396 ZNF326Q5BKZ1 582 aaKnown RBP13.89□□□□□ -0.19
KDM4A-201ENST00000372396 FYCO1Q9BQS8 1478 aa13.88□□□□□ -0.19
KDM4A-201ENST00000372396 ANP32CO43423 234 aa13.88□□□□□ -0.19
KDM4A-201ENST00000372396 DAXXQ9UER7 740 aaPredicted RBP13.88□□□□□ -0.19
KDM4A-201ENST00000372396 MIER1Q8N108 512 aa13.87□□□□□ -0.19
KDM4A-201ENST00000372396 KCNH8Q96L42 1107 aa13.87□□□□□ -0.19
KDM4A-201ENST00000372396 LRRC9Q6ZRR7 1453 aa13.86□□□□□ -0.19
KDM4A-201ENST00000372396 SLC4A1APQ9BWU0 796 aaKnown RBP13.85□□□□□ -0.19
KDM4A-201ENST00000372396 TIMELESSQ9UNS1 1208 aa13.84□□□□□ -0.19
KDM4A-201ENST00000372396 RAB3GAP2Q9H2M9 1393 aa13.84□□□□□ -0.19
KDM4A-201ENST00000372396 PKNOX2Q96KN3 472 aa13.83□□□□□ -0.2
KDM4A-201ENST00000372396 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.83□□□□□ -0.2
KDM4A-201ENST00000372396 SALL2Q9Y467 1007 aaPredicted RBP13.83□□□□□ -0.2
KDM4A-201ENST00000372396 RBM19Q9Y4C8 960 aaKnown RBP13.82□□□□□ -0.2
KDM4A-201ENST00000372396 SNAPC4Q5SXM2 1469 aa13.81□□□□□ -0.2
KDM4A-201ENST00000372396 PTPRGP23470 1445 aa13.79□□□□□ -0.2
KDM4A-201ENST00000372396 RRBP1Q9P2E9 1410 aaKnown RBP13.79□□□□□ -0.2
KDM4A-201ENST00000372396 PODXL2Q9NZ53 605 aa13.78□□□□□ -0.2
KDM4A-201ENST00000372396 TIAM1Q13009 1591 aa13.78□□□□□ -0.2
KDM4A-201ENST00000372396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.78□□□□□ -0.21e-6■■■□□ 15.9
KDM4A-201ENST00000372396 KIAA0586Q9BVV6 1533 aa13.77□□□□□ -0.21
KDM4A-201ENST00000372396 RTN4Q9NQC3 1192 aaKnown RBP13.76□□□□□ -0.21
KDM4A-201ENST00000372396 MAP3K1Q13233 1512 aa13.76□□□□□ -0.21
KDM4A-201ENST00000372396 FGD6Q6ZV73 1430 aa13.76□□□□□ -0.21
KDM4A-201ENST00000372396 MYOM3Q5VTT5 1437 aa13.76□□□□□ -0.21
KDM4A-201ENST00000372396 PHLDB1Q86UU1 1377 aa13.75□□□□□ -0.21
KDM4A-201ENST00000372396 FKBP8Q14318 412 aa13.75□□□□□ -0.21
KDM4A-201ENST00000372396 IQGAP2Q13576 1575 aa13.75□□□□□ -0.21
KDM4A-201ENST00000372396 MAGI1Q96QZ7 1491 aaPredicted RBP13.75□□□□□ -0.21
KDM4A-201ENST00000372396 SIN3AQ96ST3 1273 aa13.74□□□□□ -0.21
KDM4A-201ENST00000372396 DHX57Q6P158 1386 aaKnown RBP13.74□□□□□ -0.21
KDM4A-201ENST00000372396 NBR1Q14596 966 aa13.72□□□□□ -0.21
KDM4A-201ENST00000372396 ANKRD30AQ9BXX3 1397 aa13.72□□□□□ -0.21
KDM4A-201ENST00000372396 HECW1Q76N89 1606 aa13.72□□□□□ -0.21
KDM4A-201ENST00000372396 EHBP1L1Q8N3D4 1523 aa13.72□□□□□ -0.21
KDM4A-201ENST00000372396 NCOA2Q15596 1464 aa13.72□□□□□ -0.21
KDM4A-201ENST00000372396 SYNJ2O15056 1496 aa13.72□□□□□ -0.21
KDM4A-201ENST00000372396 EIF4G2P78344 907 aaKnown RBP eCLIP13.71□□□□□ -0.212e-7■■■■□ 19.9
KDM4A-201ENST00000372396 DDX10Q13206 875 aaKnown RBP13.71□□□□□ -0.21
KDM4A-201ENST00000372396 RSPH4AQ5TD94 716 aa13.71□□□□□ -0.21
KDM4A-201ENST00000372396 CNGB1Q14028 1251 aaPredicted RBP13.7□□□□□ -0.22
KDM4A-201ENST00000372396 KIF21AQ7Z4S6 1674 aa13.7□□□□□ -0.22
KDM4A-201ENST00000372396 GRIN2AQ12879 1464 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms