RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 SPDYE4A6NLX3 237 aa13.34□□□□□ -0.27
ATG4A-203ENST00000372232 BBXQ8WY36 941 aaPredicted RBP13.33□□□□□ -0.28
ATG4A-203ENST00000372232 TSHZ2Q9NRE2 1034 aa13.33□□□□□ -0.28
ATG4A-203ENST00000372232 CC2D2AQ9P2K1 1620 aa13.32□□□□□ -0.28
ATG4A-203ENST00000372232 ATAD2BQ9ULI0 1458 aa13.32□□□□□ -0.28
ATG4A-203ENST00000372232 ABCC8Q09428 1581 aa13.31□□□□□ -0.28
ATG4A-203ENST00000372232 BAZ1BQ9UIG0 1483 aaKnown RBP13.25□□□□□ -0.29
ATG4A-203ENST00000372232 PROM2Q8N271 834 aa13.23□□□□□ -0.29
ATG4A-203ENST00000372232 SOGA1O94964 1423 aa13.17□□□□□ -0.3
ATG4A-203ENST00000372232 WRNQ14191 1432 aaPredicted RBP eCLIP13.17□□□□□ -0.3
ATG4A-203ENST00000372232 ECM2O94769 699 aaPredicted RBP13.16□□□□□ -0.3
ATG4A-203ENST00000372232 NBR1Q14596 966 aa13.15□□□□□ -0.3
ATG4A-203ENST00000372232 DIEXFQ68CQ4 756 aaKnown RBP13.15□□□□□ -0.3
ATG4A-203ENST00000372232 EEA1Q15075 1411 aa13.15□□□□□ -0.3
ATG4A-203ENST00000372232 MKRN4PQ13434 485 aaPredicted RBP13.14□□□□□ -0.31
ATG4A-203ENST00000372232 SPRYD3Q8NCJ5 442 aa13.13□□□□□ -0.31
ATG4A-203ENST00000372232 ZNF219Q9P2Y4 722 aaPredicted RBP13.13□□□□□ -0.31
ATG4A-203ENST00000372232 HOMEZQ8IX15 550 aa13.12□□□□□ -0.31
ATG4A-203ENST00000372232 NCAPD3P42695 1498 aa13.12□□□□□ -0.31
ATG4A-203ENST00000372232 TMEM132AQ24JP5 1023 aa13.12□□□□□ -0.31
ATG4A-203ENST00000372232 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
ATG4A-203ENST00000372232 RUSC2Q8N2Y8 1516 aa13.1□□□□□ -0.31
ATG4A-203ENST00000372232 RGL2O15211 777 aa13.1□□□□□ -0.31
ATG4A-203ENST00000372232 HMGXB3Q12766 1538 aa13.09□□□□□ -0.31
ATG4A-203ENST00000372232 SYNJ1O43426 1573 aa13.09□□□□□ -0.31
ATG4A-203ENST00000372232 U3KPZ7 1027 aaPredicted RBP13.08□□□□□ -0.32
ATG4A-203ENST00000372232 TNIKQ9UKE5 1360 aa13.06□□□□□ -0.32
ATG4A-203ENST00000372232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.32
ATG4A-203ENST00000372232 CEP162Q5TB80 1403 aa13.03□□□□□ -0.32
ATG4A-203ENST00000372232 CLSPNQ9HAW4 1339 aa13.03□□□□□ -0.32
ATG4A-203ENST00000372232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.32
ATG4A-203ENST00000372232 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.32
ATG4A-203ENST00000372232 C14orf37Q86TY3 774 aa13.01□□□□□ -0.33
ATG4A-203ENST00000372232 GOLGA3Q08378 1498 aa13□□□□□ -0.33
ATG4A-203ENST00000372232 UBTFP17480 764 aaKnown RBP13□□□□□ -0.33
ATG4A-203ENST00000372232 TOP2BQ02880 1626 aa12.97□□□□□ -0.33
ATG4A-203ENST00000372232 DCAF8L1A6NGE4 600 aa12.97□□□□□ -0.33
ATG4A-203ENST00000372232 DNAJC5Q9H3Z4 198 aa12.97□□□□□ -0.33
ATG4A-203ENST00000372232 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.33
ATG4A-203ENST00000372232 KLHL34Q8N239 644 aa12.96□□□□□ -0.33
ATG4A-203ENST00000372232 CFTRP13569 1480 aa12.95□□□□□ -0.34
ATG4A-203ENST00000372232 KIF21BO75037 1637 aa12.94□□□□□ -0.34
ATG4A-203ENST00000372232 SPOCK2Q92563 424 aa12.94□□□□□ -0.34
ATG4A-203ENST00000372232 CHGAP10645 457 aaKnown RBP12.93□□□□□ -0.34
ATG4A-203ENST00000372232 BIVM-ERCC5R4GMW8 1640 aa12.92□□□□□ -0.34
ATG4A-203ENST00000372232 ANO8Q9HCE9 1232 aaPredicted RBP12.9□□□□□ -0.34
ATG4A-203ENST00000372232 SUPT16HQ9Y5B9 1047 aaKnown RBP12.9□□□□□ -0.34
ATG4A-203ENST00000372232 UBE2Q2Q8WVN8 375 aa12.89□□□□□ -0.35
ATG4A-203ENST00000372232 YTHDC1Q96MU7 727 aaKnown RBP12.88□□□□□ -0.35
ATG4A-203ENST00000372232 RAPGEF2Q9Y4G8 1499 aa12.87□□□□□ -0.35
ATG4A-203ENST00000372232 CUX1P39880 1505 aa12.87□□□□□ -0.35
ATG4A-203ENST00000372232 CLIP1P30622 1438 aa12.84□□□□□ -0.35
ATG4A-203ENST00000372232 CADPSQ9ULU8 1353 aa12.83□□□□□ -0.35
ATG4A-203ENST00000372232 PRXQ9BXM0 1461 aa12.81□□□□□ -0.36
ATG4A-203ENST00000372232 KIF27Q86VH2 1401 aa12.79□□□□□ -0.36
ATG4A-203ENST00000372232 NESP48681 1621 aa12.79□□□□□ -0.36
ATG4A-203ENST00000372232 ERICH3Q5RHP9 1530 aa12.79□□□□□ -0.36
ATG4A-203ENST00000372232 ZNF316A6NFI3 1004 aaPredicted RBP12.77□□□□□ -0.36
ATG4A-203ENST00000372232 PRDM2Q13029 1718 aa12.77□□□□□ -0.36
ATG4A-203ENST00000372232 VPS8Q8N3P4 1428 aa12.77□□□□□ -0.36
ATG4A-203ENST00000372232 PODXL2Q9NZ53 605 aa12.77□□□□□ -0.36
ATG4A-203ENST00000372232 EIF5BO60841 1220 aaKnown RBP12.77□□□□□ -0.37
ATG4A-203ENST00000372232 MYT1LQ9UL68 1186 aa12.77□□□□□ -0.37
ATG4A-203ENST00000372232 CCER1Q8TC90 406 aaPredicted RBP12.76□□□□□ -0.37
ATG4A-203ENST00000372232 LAMC3Q9Y6N6 1575 aa12.75□□□□□ -0.37
ATG4A-203ENST00000372232 ERICH6BQ5W0A0 696 aa12.73□□□□□ -0.37
ATG4A-203ENST00000372232 MIER1Q8N108 512 aa12.73□□□□□ -0.37
ATG4A-203ENST00000372232 RANGAP1P46060 587 aaPredicted RBP12.72□□□□□ -0.37
ATG4A-203ENST00000372232 CUX2O14529 1486 aa12.69□□□□□ -0.38
ATG4A-203ENST00000372232 FANCD2Q9BXW9 1451 aa12.69□□□□□ -0.38
ATG4A-203ENST00000372232 SALL2Q9Y467 1007 aaPredicted RBP12.68□□□□□ -0.38
ATG4A-203ENST00000372232 IGF1RP08069 1367 aa12.68□□□□□ -0.38
ATG4A-203ENST00000372232 FGD5Q6ZNL6 1462 aa12.68□□□□□ -0.38
ATG4A-203ENST00000372232 ERCC6Q03468 1493 aa12.67□□□□□ -0.38
ATG4A-203ENST00000372232 CIZ1Q9ULV3 898 aaPredicted RBP12.66□□□□□ -0.38
ATG4A-203ENST00000372232 ARAP1Q96P48 1450 aa12.66□□□□□ -0.38
ATG4A-203ENST00000372232 RBM19Q9Y4C8 960 aaKnown RBP12.65□□□□□ -0.38
ATG4A-203ENST00000372232 PDS5BQ9NTI5 1447 aa12.65□□□□□ -0.38
ATG4A-203ENST00000372232 PLCD3Q8N3E9 789 aa12.63□□□□□ -0.39
ATG4A-203ENST00000372232 NKX1-1Q15270 411 aaPredicted RBP12.63□□□□□ -0.39
ATG4A-203ENST00000372232 KIF21AQ7Z4S6 1674 aa12.62□□□□□ -0.39
ATG4A-203ENST00000372232 HS6ST3Q8IZP7 471 aa12.62□□□□□ -0.39
ATG4A-203ENST00000372232 CARMIL1Q5VZK9 1371 aa12.61□□□□□ -0.39
ATG4A-203ENST00000372232 DEKP35659 375 aaKnown RBP12.6□□□□□ -0.39
ATG4A-203ENST00000372232 DNMBPQ6XZF7 1577 aa12.6□□□□□ -0.39
ATG4A-203ENST00000372232 ARHGAP35Q9NRY4 1499 aa12.59□□□□□ -0.39
ATG4A-203ENST00000372232 TOPBP1Q92547 1522 aa12.58□□□□□ -0.4
ATG4A-203ENST00000372232 THOC2Q8NI27 1593 aaKnown RBP12.57□□□□□ -0.4
ATG4A-203ENST00000372232 BRPF1P55201 1214 aaPredicted RBP12.56□□□□□ -0.4
ATG4A-203ENST00000372232 POLA2Q14181 598 aa12.56□□□□□ -0.4
ATG4A-203ENST00000372232 RNF25Q96BH1 459 aaPredicted RBP12.56□□□□□ -0.4
ATG4A-203ENST00000372232 ABCA10Q8WWZ4 1543 aa12.56□□□□□ -0.4
ATG4A-203ENST00000372232 POLA1P09884 1462 aaPredicted RBP12.56□□□□□ -0.4
ATG4A-203ENST00000372232 RAD54L2Q9Y4B4 1467 aa12.56□□□□□ -0.4
ATG4A-203ENST00000372232 CCDC136Q96JN2 1154 aa12.55□□□□□ -0.4
ATG4A-203ENST00000372232 FANCIQ9NVI1 1328 aa12.54□□□□□ -0.4
ATG4A-203ENST00000372232 KANK4Q5T7N3 995 aaPredicted RBP12.54□□□□□ -0.4
ATG4A-203ENST00000372232 GTPBP6O43824 516 aaPredicted RBP12.53□□□□□ -0.4
ATG4A-203ENST00000372232 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
ATG4A-203ENST00000372232 MRC2Q9UBG0 1479 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms