RNA–Protein interactions for RNA: ENST00000371320.7

SSBP3-204, Transcript of single stranded DNA binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP3, Length 2,077 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-204ENST00000371320 CLSPNQ9HAW4 1339 aa42.9■■■■■ 4.46
SSBP3-204ENST00000371320 EFCAB5A4FU69 1503 aa42.9■■■■■ 4.46
SSBP3-204ENST00000371320 LRRC9Q6ZRR7 1453 aa42.89■■■■■ 4.46
SSBP3-204ENST00000371320 TDRD9Q8NDG6 1382 aaKnown RBP42.88■■■■■ 4.46
SSBP3-204ENST00000371320 DHX57Q6P158 1386 aaKnown RBP42.88■■■■■ 4.45
SSBP3-204ENST00000371320 ABCA5Q8WWZ7 1642 aa42.86■■■■■ 4.45
SSBP3-204ENST00000371320 CTTNBP2Q8WZ74 1663 aa42.85■■■■■ 4.45
SSBP3-204ENST00000371320 PCF11O94913 1555 aaKnown RBP42.85■■■■■ 4.45
SSBP3-204ENST00000371320 FHOD3Q2V2M9 1422 aa42.84■■■■■ 4.45
SSBP3-204ENST00000371320 KIF21AQ7Z4S6 1674 aa42.83■■■■■ 4.45
SSBP3-204ENST00000371320 GAPVD1Q14C86 1478 aa42.82■■■■■ 4.45
SSBP3-204ENST00000371320 CFAP43Q8NDM7 1665 aa42.77■■■■■ 4.44
SSBP3-204ENST00000371320 ATP1B4Q9UN42 357 aaPredicted RBP42.74■■■■■ 4.43
SSBP3-204ENST00000371320 FYCO1Q9BQS8 1478 aa42.74■■■■■ 4.43
SSBP3-204ENST00000371320 ITGAEP38570 1179 aa42.72■■■■■ 4.43
SSBP3-204ENST00000371320 CASKIN1Q8WXD9 1431 aa42.71■■■■■ 4.43
SSBP3-204ENST00000371320 AQRO60306 1485 aaKnown RBP eCLIP42.7■■■■■ 4.431e-7■■■■■ 27.3
SSBP3-204ENST00000371320 PHLDB1Q86UU1 1377 aa42.68■■■■■ 4.42
SSBP3-204ENST00000371320 FMN1Q68DA7 1419 aa42.62■■■■■ 4.41
SSBP3-204ENST00000371320 TARBP1Q13395 1621 aaKnown RBP42.62■■■■■ 4.41
SSBP3-204ENST00000371320 SAMD9Q5K651 1589 aa42.51■■■■■ 4.4
SSBP3-204ENST00000371320 RAB3GAP2Q9H2M9 1393 aa42.5■■■■■ 4.39
SSBP3-204ENST00000371320 FAM50AQ14320 339 aaKnown RBP42.49■■■■■ 4.39
SSBP3-204ENST00000371320 SNAPC4Q5SXM2 1469 aa42.47■■■■■ 4.39
SSBP3-204ENST00000371320 MRC2Q9UBG0 1479 aa42.45■■■■■ 4.39
SSBP3-204ENST00000371320 SETD5Q9C0A6 1442 aa42.42■■■■■ 4.38
SSBP3-204ENST00000371320 SCAF1Q9H7N4 1312 aaKnown RBP42.41■■■■■ 4.38
SSBP3-204ENST00000371320 PBRM1Q86U86 1689 aa42.35■■■■■ 4.37
SSBP3-204ENST00000371320 ACIN1Q9UKV3 1341 aaKnown RBP42.35■■■■■ 4.37
SSBP3-204ENST00000371320 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP42.31■■■■■ 4.362e-6■■□□□ 13.6
SSBP3-204ENST00000371320 CENPBP07199 599 aaPredicted RBP42.3■■■■■ 4.36
SSBP3-204ENST00000371320 MTUS2Q5JR59 1369 aa42.29■■■■■ 4.36
SSBP3-204ENST00000371320 GRIN2BQ13224 1484 aa42.27■■■■■ 4.36
SSBP3-204ENST00000371320 NEUROD1Q13562 356 aa42.26■■■■■ 4.36
SSBP3-204ENST00000371320 ADAMTS12P58397 1594 aa42.22■■■■■ 4.35
SSBP3-204ENST00000371320 THOC2Q8NI27 1593 aaKnown RBP42.22■■■■■ 4.35
SSBP3-204ENST00000371320 MAPKBP1O60336 1514 aa42.21■■■■■ 4.35
SSBP3-204ENST00000371320 MIER1Q8N108 512 aa42.2■■■■■ 4.35
SSBP3-204ENST00000371320 FGD6Q6ZV73 1430 aa42.2■■■■■ 4.35
SSBP3-204ENST00000371320 LRRIQ1Q96JM4 1722 aa42.17■■■■■ 4.34
SSBP3-204ENST00000371320 IFT140Q96RY7 1462 aa42.15■■■■■ 4.34
SSBP3-204ENST00000371320 IQGAP2Q13576 1575 aa42.14■■■■■ 4.34
SSBP3-204ENST00000371320 ERCC6Q03468 1493 aa42.11■■■■■ 4.33
SSBP3-204ENST00000371320 WDR62O43379 1518 aa42.11■■■■■ 4.33
SSBP3-204ENST00000371320 NCOA2Q15596 1464 aa42.07■■■■■ 4.32
SSBP3-204ENST00000371320 ZNF608Q9ULD9 1512 aaPredicted RBP42.05■■■■■ 4.32
SSBP3-204ENST00000371320 EHBP1L1Q8N3D4 1523 aa42.05■■■■■ 4.32
SSBP3-204ENST00000371320 CCDC18Q5T9S5 1454 aa42.02■■■■■ 4.32
SSBP3-204ENST00000371320 SUPT6HQ7KZ85 1726 aaKnown RBP42.01■■■■■ 4.32
SSBP3-204ENST00000371320 MYOM3Q5VTT5 1437 aa42.01■■■■■ 4.32
SSBP3-204ENST00000371320 HECW1Q76N89 1606 aa41.95■■■■■ 4.31
SSBP3-204ENST00000371320 UGGT2Q9NYU1 1516 aa41.9■■■■■ 4.3
SSBP3-204ENST00000371320 YTHDC1Q96MU7 727 aaKnown RBP41.9■■■■■ 4.3
SSBP3-204ENST00000371320 MAGI3Q5TCQ9 1506 aa41.89■■■■■ 4.3
SSBP3-204ENST00000371320 ARHGEF11O15085 1522 aa41.87■■■■■ 4.29
SSBP3-204ENST00000371320 PTPRKQ15262 1439 aa41.87■■■■■ 4.29
SSBP3-204ENST00000371320 SIN3AQ96ST3 1273 aa41.86■■■■■ 4.29
SSBP3-204ENST00000371320 EPRSP07814 1512 aaKnown RBP41.84■■■■■ 4.29
SSBP3-204ENST00000371320 HFM1A2PYH4 1435 aa41.84■■■■■ 4.29
SSBP3-204ENST00000371320 KIAA0586Q9BVV6 1533 aa41.81■■■■■ 4.28
SSBP3-204ENST00000371320 PTPN23Q9H3S7 1636 aa41.79■■■■■ 4.28
SSBP3-204ENST00000371320 TIMELESSQ9UNS1 1208 aa41.79■■■■■ 4.28
SSBP3-204ENST00000371320 EIF4G3O43432 1585 aaKnown RBP41.79■■■■■ 4.28
SSBP3-204ENST00000371320 GTF3C3Q9Y5Q9 886 aa41.76■■■■■ 4.28
SSBP3-204ENST00000371320 GRIN2AQ12879 1464 aa41.74■■■■■ 4.27
SSBP3-204ENST00000371320 CDK13Q14004 1512 aaKnown RBP41.72■■■■■ 4.27
SSBP3-204ENST00000371320 NAIPQ13075 1403 aa41.7■■■■■ 4.27
SSBP3-204ENST00000371320 TCOF1Q13428 1488 aaKnown RBP41.68■■■■■ 4.26
SSBP3-204ENST00000371320 DISP1Q96F81 1524 aa41.68■■■■■ 4.26
SSBP3-204ENST00000371320 UACAQ9BZF9 1416 aa41.68■■■■■ 4.26
SSBP3-204ENST00000371320 KIAA0556O60303 1618 aa41.67■■■■■ 4.26
SSBP3-204ENST00000371320 ARID3CA6NKF2 412 aa41.62■■■■■ 4.25
SSBP3-204ENST00000371320 MAGI1Q96QZ7 1491 aaPredicted RBP41.61■■■■■ 4.25
SSBP3-204ENST00000371320 MIA2Q96PC5 1412 aa41.58■■■■■ 4.25
SSBP3-204ENST00000371320 CHMP7Q8WUX9 453 aaPredicted RBP41.54■■■■■ 4.24
SSBP3-204ENST00000371320 PPP1R15AO75807 674 aaPredicted RBP41.53■■■■■ 4.24
SSBP3-204ENST00000371320 SYNJ2O15056 1496 aa41.51■■■■■ 4.24
SSBP3-204ENST00000371320 NUP153P49790 1475 aaKnown RBP41.48■■■■■ 4.23
SSBP3-204ENST00000371320 CHIC2Q9UKJ5 165 aa41.48■■■■■ 4.23
SSBP3-204ENST00000371320 RRP7BPQ9NSQ0 103 aa41.48■■■■■ 4.23
SSBP3-204ENST00000371320 RAPGEF6Q8TEU7 1601 aa41.47■■■■■ 4.23
SSBP3-204ENST00000371320 TONSLQ96HA7 1378 aa41.45■■■■■ 4.23
SSBP3-204ENST00000371320 AKNAQ7Z591 1439 aa41.44■■■■■ 4.22
SSBP3-204ENST00000371320 CEP170Q5SW79 1584 aa41.43■■■■■ 4.22
SSBP3-204ENST00000371320 GCC2Q8IWJ2 1684 aa41.41■■■■■ 4.22
SSBP3-204ENST00000371320 FBLN2P98095 1184 aa41.4■■■■■ 4.22
SSBP3-204ENST00000371320 CDK11AQ9UQ88 783 aaPredicted RBP41.4■■■■■ 4.22
SSBP3-204ENST00000371320 NUP160Q12769 1436 aa41.29■■■■■ 4.2
SSBP3-204ENST00000371320 CARMIL2Q6F5E8 1435 aa41.27■■■■■ 4.2
SSBP3-204ENST00000371320 TRIM52Q96A61 297 aa41.27■■■■■ 4.2
SSBP3-204ENST00000371320 JPH4Q96JJ6 628 aa41.25■■■■■ 4.19
SSBP3-204ENST00000371320 DAPK1P53355 1430 aa41.23■■■■■ 4.19
SSBP3-204ENST00000371320 PLB1Q6P1J6 1458 aa41.23■■■■■ 4.19
SSBP3-204ENST00000371320 KDM6BO15054 1643 aa41.23■■■■■ 4.19
SSBP3-204ENST00000371320 DDX10Q13206 875 aaKnown RBP41.21■■■■■ 4.19
SSBP3-204ENST00000371320 TROQ12816 1431 aaPredicted RBP41.21■■■■■ 4.19
SSBP3-204ENST00000371320 ROCK1Q13464 1354 aa41.19■■■■■ 4.19
SSBP3-204ENST00000371320 PRG4Q92954 1404 aaPredicted RBP41.18■■■■■ 4.18
SSBP3-204ENST00000371320 DNMT1P26358 1616 aaKnown RBP41.16■■■■■ 4.18
SSBP3-204ENST00000371320 ABCC5O15440 1437 aa41.16■■■■■ 4.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms