RNA–Protein interactions for RNA: ENST00000370952.3

LRRC40-201, Transcript of leucine rich repeat containing 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRRC40, Length 2,884 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40-201ENST00000370952 CCER2I3L3R5 266 aa13.57□□□□□ -0.24
LRRC40-201ENST00000370952 PEG3Q9GZU2 1588 aa13.57□□□□□ -0.24
LRRC40-201ENST00000370952 SETD5Q9C0A6 1442 aa13.56□□□□□ -0.24
LRRC40-201ENST00000370952 ARHGAP35Q9NRY4 1499 aa13.55□□□□□ -0.24
LRRC40-201ENST00000370952 FAM50AQ14320 339 aaKnown RBP13.54□□□□□ -0.24
LRRC40-201ENST00000370952 CDK11AQ9UQ88 783 aaPredicted RBP13.54□□□□□ -0.24
LRRC40-201ENST00000370952 FANCIQ9NVI1 1328 aa13.54□□□□□ -0.24
LRRC40-201ENST00000370952 BIVM-ERCC5R4GMW8 1640 aa13.52□□□□□ -0.25
LRRC40-201ENST00000370952 ATAD2BQ9ULI0 1458 aa13.52□□□□□ -0.25
LRRC40-201ENST00000370952 HNRNPUQ00839 825 aaKnown RBP eCLIP13.51□□□□□ -0.25
LRRC40-201ENST00000370952 BICRAQ9NZM4 1560 aa13.51□□□□□ -0.25
LRRC40-201ENST00000370952 PHLDB1Q86UU1 1377 aa13.48□□□□□ -0.25
LRRC40-201ENST00000370952 TIAM1Q13009 1591 aa13.47□□□□□ -0.25
LRRC40-201ENST00000370952 KIF27Q86VH2 1401 aa13.46□□□□□ -0.26
LRRC40-201ENST00000370952 DEKP35659 375 aaKnown RBP13.44□□□□□ -0.26
LRRC40-201ENST00000370952 ATP1B4Q9UN42 357 aaPredicted RBP13.43□□□□□ -0.26
LRRC40-201ENST00000370952 TIMELESSQ9UNS1 1208 aa13.42□□□□□ -0.26
LRRC40-201ENST00000370952 CUX1P39880 1505 aa13.42□□□□□ -0.26
LRRC40-201ENST00000370952 LRRC9Q6ZRR7 1453 aa13.42□□□□□ -0.26
LRRC40-201ENST00000370952 TONSLQ96HA7 1378 aa13.41□□□□□ -0.26
LRRC40-201ENST00000370952 B4GALNT3Q6L9W6 998 aa13.39□□□□□ -0.27
LRRC40-201ENST00000370952 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
LRRC40-201ENST00000370952 NBR1Q14596 966 aa13.38□□□□□ -0.27
LRRC40-201ENST00000370952 PPP4R2Q9NY27 417 aa13.38□□□□□ -0.27
LRRC40-201ENST00000370952 PRKCSHP14314 528 aaPredicted RBP13.36□□□□□ -0.27
LRRC40-201ENST00000370952 CCDC184Q52MB2 194 aa13.35□□□□□ -0.27
LRRC40-201ENST00000370952 MAP3K1Q13233 1512 aa13.35□□□□□ -0.27
LRRC40-201ENST00000370952 PAK3O75914 559 aaPredicted RBP13.33□□□□□ -0.28
LRRC40-201ENST00000370952 MYT1LQ9UL68 1186 aa13.33□□□□□ -0.28
LRRC40-201ENST00000370952 FAM9BQ8IZU0 186 aa13.31□□□□□ -0.28
LRRC40-201ENST00000370952 NOP58Q9Y2X3 529 aaKnown RBP13.31□□□□□ -0.28
LRRC40-201ENST00000370952 PCF11O94913 1555 aaKnown RBP13.3□□□□□ -0.28
LRRC40-201ENST00000370952 WASHC2AQ641Q2 1341 aa13.3□□□□□ -0.28
LRRC40-201ENST00000370952 CFAP43Q8NDM7 1665 aa13.29□□□□□ -0.28
LRRC40-201ENST00000370952 ERICH6BQ5W0A0 696 aa13.29□□□□□ -0.28
LRRC40-201ENST00000370952 IGF1RP08069 1367 aa13.29□□□□□ -0.28
LRRC40-201ENST00000370952 CCDC18Q5T9S5 1454 aa13.29□□□□□ -0.28
LRRC40-201ENST00000370952 HSPA5P11021 654 aaKnown RBP13.28□□□□□ -0.28
LRRC40-201ENST00000370952 FHAD1B1AJZ9 1412 aa13.26□□□□□ -0.29
LRRC40-201ENST00000370952 CARMIL1Q5VZK9 1371 aa13.26□□□□□ -0.29
LRRC40-201ENST00000370952 ANO8Q9HCE9 1232 aaPredicted RBP13.25□□□□□ -0.29
LRRC40-201ENST00000370952 FHOD3Q2V2M9 1422 aa13.25□□□□□ -0.29
LRRC40-201ENST00000370952 MRS2Q9HD23 443 aa13.24□□□□□ -0.29
LRRC40-201ENST00000370952 PTPRKQ15262 1439 aa13.23□□□□□ -0.29
LRRC40-201ENST00000370952 KDM5BQ9UGL1 1544 aa13.23□□□□□ -0.29
LRRC40-201ENST00000370952 UACAQ9BZF9 1416 aa13.23□□□□□ -0.29
LRRC40-201ENST00000370952 AQRO60306 1485 aaKnown RBP eCLIP13.23□□□□□ -0.294e-6■■■□□ 15
LRRC40-201ENST00000370952 FGD6Q6ZV73 1430 aa13.21□□□□□ -0.29
LRRC40-201ENST00000370952 C11orf95C9JLR9 678 aaPredicted RBP13.2□□□□□ -0.3
LRRC40-201ENST00000370952 PRKRIP1Q9H875 184 aaPredicted RBP13.2□□□□□ -0.3
LRRC40-201ENST00000370952 PTPN23Q9H3S7 1636 aa13.2□□□□□ -0.3
LRRC40-201ENST00000370952 CNGB1Q14028 1251 aaPredicted RBP13.2□□□□□ -0.3
LRRC40-201ENST00000370952 CNTLNQ9NXG0 1405 aa13.2□□□□□ -0.3
LRRC40-201ENST00000370952 ZBED9Q6R2W3 1325 aa13.19□□□□□ -0.3
LRRC40-201ENST00000370952 SENP3-EIF4A1A0A087X0R7 540 aa13.19□□□□□ -0.3
LRRC40-201ENST00000370952 EIF4G2P78344 907 aaKnown RBP eCLIP13.19□□□□□ -0.3
LRRC40-201ENST00000370952 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.18□□□□□ -0.3
LRRC40-201ENST00000370952 HFM1A2PYH4 1435 aa13.18□□□□□ -0.3
LRRC40-201ENST00000370952 AKNAQ7Z591 1439 aa13.17□□□□□ -0.3
LRRC40-201ENST00000370952 RTL5Q5HYW3 569 aaPredicted RBP13.17□□□□□ -0.3
LRRC40-201ENST00000370952 NAIPQ13075 1403 aa13.17□□□□□ -0.3
LRRC40-201ENST00000370952 CFTRP13569 1480 aa13.16□□□□□ -0.3
LRRC40-201ENST00000370952 NCOA2Q15596 1464 aa13.16□□□□□ -0.3
LRRC40-201ENST00000370952 ANP32AP39687 249 aaKnown RBP13.16□□□□□ -0.3
LRRC40-201ENST00000370952 SALL2Q9Y467 1007 aaPredicted RBP13.16□□□□□ -0.3
LRRC40-201ENST00000370952 IPO9Q96P70 1041 aaKnown RBP13.15□□□□□ -0.3
LRRC40-201ENST00000370952 FYCO1Q9BQS8 1478 aa13.15□□□□□ -0.3
LRRC40-201ENST00000370952 CCDC136Q96JN2 1154 aa13.15□□□□□ -0.3
LRRC40-201ENST00000370952 RTN4Q9NQC3 1192 aaKnown RBP13.15□□□□□ -0.3
LRRC40-201ENST00000370952 RRP7BPQ9NSQ0 103 aa13.15□□□□□ -0.3
LRRC40-201ENST00000370952 IL27Q8NEV9 243 aa13.14□□□□□ -0.31
LRRC40-201ENST00000370952 ZBTB47Q9UFB7 747 aaPredicted RBP13.14□□□□□ -0.31
LRRC40-201ENST00000370952 CHIC2Q9UKJ5 165 aa13.14□□□□□ -0.31
LRRC40-201ENST00000370952 MTUS2Q5JR59 1369 aa13.14□□□□□ -0.31
LRRC40-201ENST00000370952 CASKIN1Q8WXD9 1431 aa13.13□□□□□ -0.31
LRRC40-201ENST00000370952 CCDC7Q96M83 1385 aa13.13□□□□□ -0.31
LRRC40-201ENST00000370952 FGD5Q6ZNL6 1462 aa13.13□□□□□ -0.31
LRRC40-201ENST00000370952 FMN1Q68DA7 1419 aa13.11□□□□□ -0.31
LRRC40-201ENST00000370952 FOXD1Q16676 465 aa13.11□□□□□ -0.31
LRRC40-201ENST00000370952 L3MBTL2Q969R5 705 aa13.11□□□□□ -0.31
LRRC40-201ENST00000370952 HMGXB3Q12766 1538 aa13.1□□□□□ -0.31
LRRC40-201ENST00000370952 NPM2Q86SE8 214 aaKnown RBP13.1□□□□□ -0.31
LRRC40-201ENST00000370952 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
LRRC40-201ENST00000370952 NCOA1Q15788 1441 aa13.09□□□□□ -0.31
LRRC40-201ENST00000370952 DENND4BO75064 1496 aaPredicted RBP13.08□□□□□ -0.32
LRRC40-201ENST00000370952 NUDCQ9Y266 331 aa13.07□□□□□ -0.32
LRRC40-201ENST00000370952 POLR3GLQ9BT43 218 aa13.06□□□□□ -0.32
LRRC40-201ENST00000370952 LAS1LQ9Y4W2 734 aaKnown RBP13.06□□□□□ -0.32
LRRC40-201ENST00000370952 KIF7Q2M1P5 1343 aa13.06□□□□□ -0.32
LRRC40-201ENST00000370952 SMG6Q86US8 1419 aaKnown RBP13.06□□□□□ -0.32
LRRC40-201ENST00000370952 NBPF8Q3BBV2 869 aa13.06□□□□□ -0.32
LRRC40-201ENST00000370952 MYOM3Q5VTT5 1437 aa13.05□□□□□ -0.32
LRRC40-201ENST00000370952 EFCAB5A4FU69 1503 aa13.05□□□□□ -0.32
LRRC40-201ENST00000370952 KDM6BO15054 1643 aa13.05□□□□□ -0.32
LRRC40-201ENST00000370952 LRRIQ1Q96JM4 1722 aa13.04□□□□□ -0.32
LRRC40-201ENST00000370952 PRDM2Q13029 1718 aa13.04□□□□□ -0.32
LRRC40-201ENST00000370952 SNAPC4Q5SXM2 1469 aa13.04□□□□□ -0.32
LRRC40-201ENST00000370952 MPHOSPH9Q99550 1183 aa13.03□□□□□ -0.32
LRRC40-201ENST00000370952 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.03□□□□□ -0.32
LRRC40-201ENST00000370952 RNF123Q5XPI4 1314 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms