RNA–Protein interactions for RNA: ENST00000361909.8

CMTM3-201, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM3, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-201ENST00000361909 TDRD9Q8NDG6 1382 aaKnown RBP28.48■■■□□ 2.15
CMTM3-201ENST00000361909 ZNF316A6NFI3 1004 aaPredicted RBP28.45■■■□□ 2.14
CMTM3-201ENST00000361909 CLIP1P30622 1438 aa28.38■■■□□ 2.13
CMTM3-201ENST00000361909 PBRM1Q86U86 1689 aa28.33■■■□□ 2.13
CMTM3-201ENST00000361909 AQRO60306 1485 aaKnown RBP eCLIP28.31■■■□□ 2.12
CMTM3-201ENST00000361909 GRIN2BQ13224 1484 aa28.29■■■□□ 2.12
CMTM3-201ENST00000361909 ZNF608Q9ULD9 1512 aaPredicted RBP28.27■■■□□ 2.12
CMTM3-201ENST00000361909 CLSPNQ9HAW4 1339 aa28.23■■■□□ 2.11
CMTM3-201ENST00000361909 FHAD1B1AJZ9 1412 aa28.21■■■□□ 2.11
CMTM3-201ENST00000361909 EIF4G3O43432 1585 aaKnown RBP28.2■■■□□ 2.11
CMTM3-201ENST00000361909 ADAMTS12P58397 1594 aa28.17■■■□□ 2.1
CMTM3-201ENST00000361909 VPS8Q8N3P4 1428 aa28.16■■■□□ 2.1
CMTM3-201ENST00000361909 CTTNBP2Q8WZ74 1663 aa28.15■■■□□ 2.1
CMTM3-201ENST00000361909 RANGAP1P46060 587 aaPredicted RBP28.11■■■□□ 2.09
CMTM3-201ENST00000361909 ARHGAP35Q9NRY4 1499 aa28.1■■■□□ 2.09
CMTM3-201ENST00000361909 ARAP1Q96P48 1450 aa28.09■■■□□ 2.09
CMTM3-201ENST00000361909 MAGI1Q96QZ7 1491 aaPredicted RBP28.07■■■□□ 2.08
CMTM3-201ENST00000361909 SNAPC4Q5SXM2 1469 aa28.05■■■□□ 2.08
CMTM3-201ENST00000361909 YTHDC1Q96MU7 727 aaKnown RBP28■■■□□ 2.07
CMTM3-201ENST00000361909 EFCAB5A4FU69 1503 aa28■■■□□ 2.07
CMTM3-201ENST00000361909 MIER1Q8N108 512 aa28■■■□□ 2.07
CMTM3-201ENST00000361909 SYNJ2O15056 1496 aa27.95■■■□□ 2.06
CMTM3-201ENST00000361909 GRIN2AQ12879 1464 aa27.93■■■□□ 2.06
CMTM3-201ENST00000361909 IQGAP2Q13576 1575 aa27.87■■■□□ 2.05
CMTM3-201ENST00000361909 SAMD9Q5K651 1589 aa27.87■■■□□ 2.05
CMTM3-201ENST00000361909 APLP2Q06481 763 aa27.87■■■□□ 2.05
CMTM3-201ENST00000361909 CHMP7Q8WUX9 453 aaPredicted RBP27.85■■■□□ 2.05
CMTM3-201ENST00000361909 KIAA0586Q9BVV6 1533 aa27.84■■■□□ 2.05
CMTM3-201ENST00000361909 TTBK1Q5TCY1 1321 aaPredicted RBP27.83■■■□□ 2.05
CMTM3-201ENST00000361909 FHOD3Q2V2M9 1422 aa27.77■■■□□ 2.04
CMTM3-201ENST00000361909 UGGT2Q9NYU1 1516 aa27.77■■■□□ 2.04
CMTM3-201ENST00000361909 NUP160Q12769 1436 aa27.75■■■□□ 2.03
CMTM3-201ENST00000361909 FMN1Q68DA7 1419 aa27.75■■■□□ 2.03
CMTM3-201ENST00000361909 P3H3Q8IVL6 736 aa27.75■■■□□ 2.03
CMTM3-201ENST00000361909 MAP3K1Q13233 1512 aa27.74■■■□□ 2.03
CMTM3-201ENST00000361909 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
CMTM3-201ENST00000361909 FBLN2P98095 1184 aa27.7■■■□□ 2.03
CMTM3-201ENST00000361909 CASKIN1Q8WXD9 1431 aa27.68■■■□□ 2.02
CMTM3-201ENST00000361909 FYCO1Q9BQS8 1478 aa27.68■■■□□ 2.02
CMTM3-201ENST00000361909 PCF11O94913 1555 aaKnown RBP27.66■■■□□ 2.02
CMTM3-201ENST00000361909 SUPT16HQ9Y5B9 1047 aaKnown RBP27.64■■■□□ 2.02
CMTM3-201ENST00000361909 TIAM1Q13009 1591 aa27.61■■■□□ 2.01
CMTM3-201ENST00000361909 HNRNPUL2Q1KMD3 747 aaKnown RBP27.6■■■□□ 2.01
CMTM3-201ENST00000361909 DISP1Q96F81 1524 aa27.59■■■□□ 2.01
CMTM3-201ENST00000361909 KIAA0556O60303 1618 aa27.58■■■□□ 2.01
CMTM3-201ENST00000361909 CHD1O14646 1710 aa27.58■■■□□ 2.01
CMTM3-201ENST00000361909 CFAP43Q8NDM7 1665 aa27.56■■■□□ 2
CMTM3-201ENST00000361909 KANK4Q5T7N3 995 aaPredicted RBP27.56■■■□□ 2
CMTM3-201ENST00000361909 JPH4Q96JJ6 628 aa27.53■■■□□ 2
CMTM3-201ENST00000361909 ANP32EQ9BTT0 268 aa27.51■■□□□ 1.99
CMTM3-201ENST00000361909 LRRC9Q6ZRR7 1453 aa27.49■■□□□ 1.99
CMTM3-201ENST00000361909 CARMIL2Q6F5E8 1435 aa27.49■■□□□ 1.99
CMTM3-201ENST00000361909 ATP1B4Q9UN42 357 aaPredicted RBP27.46■■□□□ 1.99
CMTM3-201ENST00000361909 DHX57Q6P158 1386 aaKnown RBP27.45■■□□□ 1.98
CMTM3-201ENST00000361909 HECW1Q76N89 1606 aa27.43■■□□□ 1.98
CMTM3-201ENST00000361909 TSHZ2Q9NRE2 1034 aa27.43■■□□□ 1.98
CMTM3-201ENST00000361909 CCDC18Q5T9S5 1454 aa27.41■■□□□ 1.98
CMTM3-201ENST00000361909 LRRIQ1Q96JM4 1722 aa27.4■■□□□ 1.98
CMTM3-201ENST00000361909 SHROOM2Q13796 1616 aa27.37■■□□□ 1.97
CMTM3-201ENST00000361909 RRBP1Q9P2E9 1410 aaKnown RBP27.34■■□□□ 1.97
CMTM3-201ENST00000361909 PRG4Q92954 1404 aaPredicted RBP27.32■■□□□ 1.96
CMTM3-201ENST00000361909 RAPGEF6Q8TEU7 1601 aa27.32■■□□□ 1.96
CMTM3-201ENST00000361909 EPRSP07814 1512 aaKnown RBP27.32■■□□□ 1.96
CMTM3-201ENST00000361909 CLASP1Q7Z460 1538 aa27.3■■□□□ 1.96
CMTM3-201ENST00000361909 MTUS2Q5JR59 1369 aa27.28■■□□□ 1.96
CMTM3-201ENST00000361909 EHBP1L1Q8N3D4 1523 aa27.25■■□□□ 1.95
CMTM3-201ENST00000361909 NUP153P49790 1475 aaKnown RBP27.25■■□□□ 1.95
CMTM3-201ENST00000361909 CCNB3Q8WWL7 1395 aa27.22■■□□□ 1.95
CMTM3-201ENST00000361909 PHLDB1Q86UU1 1377 aa27.21■■□□□ 1.95
CMTM3-201ENST00000361909 ABCA8O94911 1581 aa27.2■■□□□ 1.94
CMTM3-201ENST00000361909 PLB1Q6P1J6 1458 aa27.2■■□□□ 1.94
CMTM3-201ENST00000361909 SUPT6HQ7KZ85 1726 aaKnown RBP27.18■■□□□ 1.94
CMTM3-201ENST00000361909 CDK13Q14004 1512 aaKnown RBP27.18■■□□□ 1.94
CMTM3-201ENST00000361909 PTPRGP23470 1445 aa27.18■■□□□ 1.94
CMTM3-201ENST00000361909 MAGI3Q5TCQ9 1506 aa27.17■■□□□ 1.94
CMTM3-201ENST00000361909 BCL11AQ9H165 835 aa27.14■■□□□ 1.94
CMTM3-201ENST00000361909 CDK11AQ9UQ88 783 aaPredicted RBP27.13■■□□□ 1.93
CMTM3-201ENST00000361909 ARHGEF11O15085 1522 aa27.13■■□□□ 1.93
CMTM3-201ENST00000361909 NCOA2Q15596 1464 aa27.12■■□□□ 1.93
CMTM3-201ENST00000361909 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.11■■□□□ 1.93
CMTM3-201ENST00000361909 ERCC6L2Q5T890 1561 aa27.07■■□□□ 1.92
CMTM3-201ENST00000361909 MYOM3Q5VTT5 1437 aa27.05■■□□□ 1.92
CMTM3-201ENST00000361909 FGD6Q6ZV73 1430 aa27.04■■□□□ 1.92
CMTM3-201ENST00000361909 OSCARQ8IYS5 282 aa27.04■■□□□ 1.92
CMTM3-201ENST00000361909 UACAQ9BZF9 1416 aa27.04■■□□□ 1.92
CMTM3-201ENST00000361909 ARID3CA6NKF2 412 aa27.03■■□□□ 1.92
CMTM3-201ENST00000361909 ATP10BO94823 1461 aa27.01■■□□□ 1.91
CMTM3-201ENST00000361909 TROQ12816 1431 aaPredicted RBP27.01■■□□□ 1.91
CMTM3-201ENST00000361909 ABCC2Q92887 1545 aa26.95■■□□□ 1.9
CMTM3-201ENST00000361909 ADCY10Q96PN6 1610 aa26.95■■□□□ 1.9
CMTM3-201ENST00000361909 MIA2Q96PC5 1412 aa26.94■■□□□ 1.9
CMTM3-201ENST00000361909 FAM50AQ14320 339 aaKnown RBP26.94■■□□□ 1.9
CMTM3-201ENST00000361909 UHRF1BP1LA0JNW5 1464 aa26.93■■□□□ 1.9
CMTM3-201ENST00000361909 PLEKHD1A6NEE1 506 aa26.92■■□□□ 1.9
CMTM3-201ENST00000361909 MAPKBP1O60336 1514 aa26.92■■□□□ 1.9
CMTM3-201ENST00000361909 TCOF1Q13428 1488 aaKnown RBP26.9■■□□□ 1.9
CMTM3-201ENST00000361909 NEFLP07196 543 aa26.9■■□□□ 1.9
CMTM3-201ENST00000361909 PTPN23Q9H3S7 1636 aa26.89■■□□□ 1.9
CMTM3-201ENST00000361909 FKBP8Q14318 412 aa26.86■■□□□ 1.89
CMTM3-201ENST00000361909 ITGAEP38570 1179 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms