RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 BCL11AQ9H165 835 aa18.97■□□□□ 0.63
COL6A1-201ENST00000361866 WIZO95785 1651 aa18.96■□□□□ 0.63
COL6A1-201ENST00000361866 VPS8Q8N3P4 1428 aa18.96■□□□□ 0.63
COL6A1-201ENST00000361866 BAZ1AQ9NRL2 1556 aaPredicted RBP18.95■□□□□ 0.62
COL6A1-201ENST00000361866 CCNB3Q8WWL7 1395 aa18.94■□□□□ 0.62
COL6A1-201ENST00000361866 MTUS2Q5JR59 1369 aa18.91■□□□□ 0.62
COL6A1-201ENST00000361866 EIF4G2P78344 907 aaKnown RBP eCLIP18.9■□□□□ 0.62
COL6A1-201ENST00000361866 TMC1Q8TDI8 760 aa18.89■□□□□ 0.61
COL6A1-201ENST00000361866 B4GALNT3Q6L9W6 998 aa18.89■□□□□ 0.61
COL6A1-201ENST00000361866 ZBTB47Q9UFB7 747 aaPredicted RBP18.88■□□□□ 0.61
COL6A1-201ENST00000361866 KDM2AQ9Y2K7 1162 aa18.82■□□□□ 0.6
COL6A1-201ENST00000361866 BAZ1BQ9UIG0 1483 aaKnown RBP18.81■□□□□ 0.6
COL6A1-201ENST00000361866 DHX57Q6P158 1386 aaKnown RBP18.8■□□□□ 0.6
COL6A1-201ENST00000361866 RAB3GAP2Q9H2M9 1393 aa18.8■□□□□ 0.6
COL6A1-201ENST00000361866 EIF5BO60841 1220 aaKnown RBP18.79■□□□□ 0.6
COL6A1-201ENST00000361866 KIF27Q86VH2 1401 aa18.79■□□□□ 0.6
COL6A1-201ENST00000361866 RAPGEF2Q9Y4G8 1499 aa18.75■□□□□ 0.59
COL6A1-201ENST00000361866 PPP4R2Q9NY27 417 aa18.74■□□□□ 0.59
COL6A1-201ENST00000361866 CANXP27824 592 aaKnown RBP18.71■□□□□ 0.59
COL6A1-201ENST00000361866 CCER2I3L3R5 266 aa18.7■□□□□ 0.58
COL6A1-201ENST00000361866 SETD5Q9C0A6 1442 aa18.7■□□□□ 0.58
COL6A1-201ENST00000361866 PPP1R15AO75807 674 aaPredicted RBP18.67■□□□□ 0.58
COL6A1-201ENST00000361866 RTN4Q9NQC3 1192 aaKnown RBP18.67■□□□□ 0.58
COL6A1-201ENST00000361866 FOXD1Q16676 465 aa18.66■□□□□ 0.58
COL6A1-201ENST00000361866 HSPA5P11021 654 aaKnown RBP18.64■□□□□ 0.57
COL6A1-201ENST00000361866 ARXQ96QS3 562 aa18.64■□□□□ 0.57
COL6A1-201ENST00000361866 LAS1LQ9Y4W2 734 aaKnown RBP18.63■□□□□ 0.57
COL6A1-201ENST00000361866 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.62■□□□□ 0.574e-7■■■■□ 22.7
COL6A1-201ENST00000361866 NOP58Q9Y2X3 529 aaKnown RBP18.62■□□□□ 0.57
COL6A1-201ENST00000361866 DEKP35659 375 aaKnown RBP18.61■□□□□ 0.57
COL6A1-201ENST00000361866 TOP2AP11388 1531 aaKnown RBP18.6■□□□□ 0.57
COL6A1-201ENST00000361866 TIMELESSQ9UNS1 1208 aa18.59■□□□□ 0.57
COL6A1-201ENST00000361866 CARMIL1Q5VZK9 1371 aa18.59■□□□□ 0.57
COL6A1-201ENST00000361866 RGL3Q3MIN7 710 aa18.57■□□□□ 0.56
COL6A1-201ENST00000361866 CUX2O14529 1486 aa18.57■□□□□ 0.56
COL6A1-201ENST00000361866 CHMP7Q8WUX9 453 aaPredicted RBP18.52■□□□□ 0.56
COL6A1-201ENST00000361866 NEFMP07197 916 aa18.5■□□□□ 0.55
COL6A1-201ENST00000361866 CARD11Q9BXL7 1154 aa18.49■□□□□ 0.55
COL6A1-201ENST00000361866 TSPY4P0CV99 314 aa18.49■□□□□ 0.55
COL6A1-201ENST00000361866 TSPY10P0CW01 314 aa18.49■□□□□ 0.55
COL6A1-201ENST00000361866 FHAD1B1AJZ9 1412 aa18.48■□□□□ 0.55
COL6A1-201ENST00000361866 WDR43Q15061 677 aaKnown RBP eCLIP18.46■□□□□ 0.55
COL6A1-201ENST00000361866 L3MBTL2Q969R5 705 aa18.43■□□□□ 0.54
COL6A1-201ENST00000361866 CFDP1Q9UEE9 299 aaPredicted RBP18.41■□□□□ 0.54
COL6A1-201ENST00000361866 ARHGAP35Q9NRY4 1499 aa18.41■□□□□ 0.54
COL6A1-201ENST00000361866 RGS3P49796 1198 aa18.41■□□□□ 0.54
COL6A1-201ENST00000361866 CHGAP10645 457 aaKnown RBP18.39■□□□□ 0.54
COL6A1-201ENST00000361866 SMARCA2P51531 1590 aa18.39■□□□□ 0.53
COL6A1-201ENST00000361866 CC2D1BQ5T0F9 858 aaKnown RBP18.39■□□□□ 0.53
COL6A1-201ENST00000361866 MPHOSPH9Q99550 1183 aa18.38■□□□□ 0.53
COL6A1-201ENST00000361866 SMARCA4P51532 1647 aa18.37■□□□□ 0.53
COL6A1-201ENST00000361866 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.37■□□□□ 0.53
COL6A1-201ENST00000361866 FHOD3Q2V2M9 1422 aa18.37■□□□□ 0.53
COL6A1-201ENST00000361866 UPF2Q9HAU5 1272 aaKnown RBP18.35■□□□□ 0.53
COL6A1-201ENST00000361866 KIF21BO75037 1637 aa18.35■□□□□ 0.53
COL6A1-201ENST00000361866 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.53
COL6A1-201ENST00000361866 DCAF11Q8TEB1 546 aa18.33■□□□□ 0.52
COL6A1-201ENST00000361866 ERCC6Q03468 1493 aa18.31■□□□□ 0.52
COL6A1-201ENST00000361866 ERICH6BQ5W0A0 696 aa18.31■□□□□ 0.52
COL6A1-201ENST00000361866 DDRGK1Q96HY6 314 aa18.31■□□□□ 0.52
COL6A1-201ENST00000361866 PRKRIP1Q9H875 184 aaPredicted RBP18.31■□□□□ 0.52
COL6A1-201ENST00000361866 PPM1GO15355 546 aaPredicted RBP18.3■□□□□ 0.52
COL6A1-201ENST00000361866 HSP90AA1P07900 732 aaKnown RBP18.3■□□□□ 0.52
COL6A1-201ENST00000361866 NEUROD2Q15784 382 aa18.29■□□□□ 0.52
COL6A1-201ENST00000361866 ATAD2BQ9ULI0 1458 aa18.29■□□□□ 0.52
COL6A1-201ENST00000361866 NPM1P06748 294 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL6A1-201ENST00000361866 PHLDB1Q86UU1 1377 aa18.27■□□□□ 0.52
COL6A1-201ENST00000361866 PKD2Q13563 968 aa18.27■□□□□ 0.51
COL6A1-201ENST00000361866 NUDCQ9Y266 331 aa18.26■□□□□ 0.51
COL6A1-201ENST00000361866 IPO9Q96P70 1041 aaKnown RBP18.25■□□□□ 0.51
COL6A1-201ENST00000361866 PLEKHD1A6NEE1 506 aa18.25■□□□□ 0.51
COL6A1-201ENST00000361866 TDRD9Q8NDG6 1382 aaKnown RBP18.25■□□□□ 0.51
COL6A1-201ENST00000361866 ARAP1Q96P48 1450 aa18.24■□□□□ 0.51
COL6A1-201ENST00000361866 FANCIQ9NVI1 1328 aa18.24■□□□□ 0.51
COL6A1-201ENST00000361866 RCAN3Q9UKA8 241 aa18.24■□□□□ 0.51
COL6A1-201ENST00000361866 KNSTRNQ9Y448 316 aa18.23■□□□□ 0.51
COL6A1-201ENST00000361866 FMN1Q68DA7 1419 aa18.22■□□□□ 0.51
COL6A1-201ENST00000361866 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.22■□□□□ 0.51
COL6A1-201ENST00000361866 EIF4G1Q04637 1599 aaKnown RBP18.2■□□□□ 0.5
COL6A1-201ENST00000361866 FRAT1Q92837 279 aaPredicted RBP18.19■□□□□ 0.5
COL6A1-201ENST00000361866 CADPSQ9ULU8 1353 aa18.18■□□□□ 0.5
COL6A1-201ENST00000361866 TNNT2P45379 298 aaPredicted RBP18.18■□□□□ 0.5
COL6A1-201ENST00000361866 CCDC184Q52MB2 194 aa18.18■□□□□ 0.5
COL6A1-201ENST00000361866 SLC24A1O60721 1099 aa18.18■□□□□ 0.5
COL6A1-201ENST00000361866 WASHC2AQ641Q2 1341 aa18.17■□□□□ 0.5
COL6A1-201ENST00000361866 SYNJ1O43426 1573 aa18.16■□□□□ 0.5
COL6A1-201ENST00000361866 GLIPR1L2Q4G1C9 344 aa18.16■□□□□ 0.5
COL6A1-201ENST00000361866 PLIN1O60240 522 aa18.15■□□□□ 0.5
COL6A1-201ENST00000361866 IGF1RP08069 1367 aa18.15■□□□□ 0.5
COL6A1-201ENST00000361866 ZBED9Q6R2W3 1325 aa18.15■□□□□ 0.5
COL6A1-201ENST00000361866 SLC4A3P48751 1232 aa18.15■□□□□ 0.5
COL6A1-201ENST00000361866 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.5
COL6A1-201ENST00000361866 EXOC6Q8TAG9 804 aa18.14■□□□□ 0.49
COL6A1-201ENST00000361866 CCDC18Q5T9S5 1454 aa18.14■□□□□ 0.49
COL6A1-201ENST00000361866 BECN1Q14457 450 aa18.13■□□□□ 0.49
COL6A1-201ENST00000361866 RRBP1Q9P2E9 1410 aaKnown RBP18.13■□□□□ 0.49
COL6A1-201ENST00000361866 MSH5O43196 834 aa18.13■□□□□ 0.49
COL6A1-201ENST00000361866 TCERG1O14776 1098 aaKnown RBP18.12■□□□□ 0.49
COL6A1-201ENST00000361866 SPRYD3Q8NCJ5 442 aa18.1■□□□□ 0.49
COL6A1-201ENST00000361866 ST20-MTHFSA0A0A6YYL1 179 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms