RNA–Protein interactions for RNA: ENST00000361367.6

CTR9-201, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTR9, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-201ENST00000361367 KDM2AQ9Y2K7 1162 aa19.16■□□□□ 0.66
CTR9-201ENST00000361367 FANCD2Q9BXW9 1451 aa19.11■□□□□ 0.65
CTR9-201ENST00000361367 NEFMP07197 916 aa19.1■□□□□ 0.65
CTR9-201ENST00000361367 CCNB3Q8WWL7 1395 aa19.09■□□□□ 0.65
CTR9-201ENST00000361367 CARMIL2Q6F5E8 1435 aa19.08■□□□□ 0.65
CTR9-201ENST00000361367 DDX10Q13206 875 aaKnown RBP19.07■□□□□ 0.64
CTR9-201ENST00000361367 ACIN1Q9UKV3 1341 aaKnown RBP19.06■□□□□ 0.64
CTR9-201ENST00000361367 NCAPD3P42695 1498 aa19.06■□□□□ 0.64
CTR9-201ENST00000361367 DAXXQ9UER7 740 aaPredicted RBP19.06■□□□□ 0.64
CTR9-201ENST00000361367 VPS8Q8N3P4 1428 aa19.04■□□□□ 0.64
CTR9-201ENST00000361367 ARID4BQ4LE39 1312 aaPredicted RBP19.02■□□□□ 0.64
CTR9-201ENST00000361367 CLSPNQ9HAW4 1339 aa19.02■□□□□ 0.63
CTR9-201ENST00000361367 SLC24A1O60721 1099 aa19■□□□□ 0.63
CTR9-201ENST00000361367 RGL3Q3MIN7 710 aa19■□□□□ 0.63
CTR9-201ENST00000361367 RAPGEF2Q9Y4G8 1499 aa19■□□□□ 0.63
CTR9-201ENST00000361367 FMN1Q68DA7 1419 aa18.97■□□□□ 0.63
CTR9-201ENST00000361367 PPP1R15AO75807 674 aaPredicted RBP18.95■□□□□ 0.62
CTR9-201ENST00000361367 SENP3Q9H4L4 574 aaPredicted RBP18.95■□□□□ 0.62
CTR9-201ENST00000361367 KANK4Q5T7N3 995 aaPredicted RBP18.95■□□□□ 0.62
CTR9-201ENST00000361367 EIF4G2P78344 907 aaKnown RBP eCLIP18.94■□□□□ 0.62
CTR9-201ENST00000361367 HIRIP3Q9BW71 556 aaPredicted RBP18.94■□□□□ 0.62
CTR9-201ENST00000361367 JPH4Q96JJ6 628 aa18.93■□□□□ 0.62
CTR9-201ENST00000361367 TRHP20396 242 aaPredicted RBP18.91■□□□□ 0.62
CTR9-201ENST00000361367 CANXP27824 592 aaKnown RBP18.9■□□□□ 0.62
CTR9-201ENST00000361367 RUSC2Q8N2Y8 1516 aa18.89■□□□□ 0.61
CTR9-201ENST00000361367 FHOD3Q2V2M9 1422 aa18.87■□□□□ 0.61
CTR9-201ENST00000361367 ARHGAP35Q9NRY4 1499 aa18.86■□□□□ 0.61
CTR9-201ENST00000361367 FAM9BQ8IZU0 186 aa18.86■□□□□ 0.61
CTR9-201ENST00000361367 FGD5Q6ZNL6 1462 aa18.86■□□□□ 0.61
CTR9-201ENST00000361367 GTF3C3Q9Y5Q9 886 aa18.85■□□□□ 0.61
CTR9-201ENST00000361367 TMC1Q8TDI8 760 aa18.84■□□□□ 0.61
CTR9-201ENST00000361367 SIN3AQ96ST3 1273 aa18.83■□□□□ 0.61
CTR9-201ENST00000361367 ZBTB47Q9UFB7 747 aaPredicted RBP18.82■□□□□ 0.6
CTR9-201ENST00000361367 HNRNPUQ00839 825 aaKnown RBP eCLIP18.82■□□□□ 0.6
CTR9-201ENST00000361367 EFCAB2Q5VUJ9 269 aa18.81■□□□□ 0.6
CTR9-201ENST00000361367 RAD54L2Q9Y4B4 1467 aa18.8■□□□□ 0.6
CTR9-201ENST00000361367 GAPVD1Q14C86 1478 aa18.79■□□□□ 0.6
CTR9-201ENST00000361367 IGF1RP08069 1367 aa18.78■□□□□ 0.6
CTR9-201ENST00000361367 CARD11Q9BXL7 1154 aa18.77■□□□□ 0.59
CTR9-201ENST00000361367 MRS2Q9HD23 443 aa18.76■□□□□ 0.59
CTR9-201ENST00000361367 SALL2Q9Y467 1007 aaPredicted RBP18.76■□□□□ 0.59
CTR9-201ENST00000361367 MLECQ14165 292 aa18.76■□□□□ 0.59
CTR9-201ENST00000361367 KANK1Q14678 1352 aa18.75■□□□□ 0.59
CTR9-201ENST00000361367 CC2D2AQ9P2K1 1620 aa18.74■□□□□ 0.59
CTR9-201ENST00000361367 C14orf37Q86TY3 774 aa18.74■□□□□ 0.59
CTR9-201ENST00000361367 CFTRP13569 1480 aa18.73■□□□□ 0.59
CTR9-201ENST00000361367 GGT6Q6P531 493 aa18.73■□□□□ 0.59
CTR9-201ENST00000361367 WDR43Q15061 677 aaKnown RBP eCLIP18.73■□□□□ 0.59
CTR9-201ENST00000361367 BCL11AQ9H165 835 aa18.73■□□□□ 0.59
CTR9-201ENST00000361367 SETD5Q9C0A6 1442 aa18.72■□□□□ 0.59
CTR9-201ENST00000361367 OSCARQ8IYS5 282 aa18.71■□□□□ 0.59
CTR9-201ENST00000361367 NESP48681 1621 aa18.7■□□□□ 0.58
CTR9-201ENST00000361367 PTPRGP23470 1445 aa18.69■□□□□ 0.58
CTR9-201ENST00000361367 CDCA8Q53HL2 280 aa18.69■□□□□ 0.58
CTR9-201ENST00000361367 AQRO60306 1485 aaKnown RBP eCLIP18.68■□□□□ 0.582e-6■■■□□ 16.1
CTR9-201ENST00000361367 SCAF1Q9H7N4 1312 aaKnown RBP18.68■□□□□ 0.58
CTR9-201ENST00000361367 MIER1Q8N108 512 aa18.67■□□□□ 0.58
CTR9-201ENST00000361367 HMGXB3Q12766 1538 aa18.67■□□□□ 0.58
CTR9-201ENST00000361367 PKD2Q13563 968 aa18.67■□□□□ 0.58
CTR9-201ENST00000361367 DCAF11Q8TEB1 546 aa18.67■□□□□ 0.58
CTR9-201ENST00000361367 CCDC18Q5T9S5 1454 aa18.66■□□□□ 0.58
CTR9-201ENST00000361367 HNRNPMP52272 730 aaKnown RBP eCLIP18.65■□□□□ 0.58
CTR9-201ENST00000361367 ANKRD30AQ9BXX3 1397 aa18.65■□□□□ 0.58
CTR9-201ENST00000361367 BICRAQ9NZM4 1560 aa18.64■□□□□ 0.57
CTR9-201ENST00000361367 POGKQ9P215 609 aa18.63■□□□□ 0.57
CTR9-201ENST00000361367 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
CTR9-201ENST00000361367 CYB5RLQ6IPT4 315 aa18.62■□□□□ 0.57
CTR9-201ENST00000361367 TIMELESSQ9UNS1 1208 aa18.61■□□□□ 0.57
CTR9-201ENST00000361367 FOXD1Q16676 465 aa18.61■□□□□ 0.57
CTR9-201ENST00000361367 RSPH4AQ5TD94 716 aa18.61■□□□□ 0.57
CTR9-201ENST00000361367 NUP155O75694 1391 aa18.61■□□□□ 0.57
CTR9-201ENST00000361367 KNSTRNQ9Y448 316 aa18.6■□□□□ 0.57
CTR9-201ENST00000361367 RAB3GAP2Q9H2M9 1393 aa18.6■□□□□ 0.57
CTR9-201ENST00000361367 SPAG9O60271 1321 aaKnown RBP18.58■□□□□ 0.57
CTR9-201ENST00000361367 KIF3BO15066 747 aa18.58■□□□□ 0.56
CTR9-201ENST00000361367 MPHOSPH9Q99550 1183 aa18.58■□□□□ 0.56
CTR9-201ENST00000361367 ZBTB7CA1YPR0 619 aa18.56■□□□□ 0.56
CTR9-201ENST00000361367 HDGFP51858 240 aaKnown RBP18.56■□□□□ 0.56
CTR9-201ENST00000361367 FKBP8Q14318 412 aa18.55■□□□□ 0.56
CTR9-201ENST00000361367 MRC2Q9UBG0 1479 aa18.55■□□□□ 0.56
CTR9-201ENST00000361367 GRIN2BQ13224 1484 aa18.54■□□□□ 0.56
CTR9-201ENST00000361367 DNAJC5BQ9UF47 199 aa18.52■□□□□ 0.56
CTR9-201ENST00000361367 SYNJ1O43426 1573 aa18.5■□□□□ 0.55
CTR9-201ENST00000361367 CFAP53Q96M91 514 aa18.5■□□□□ 0.55
CTR9-201ENST00000361367 TOPBP1Q92547 1522 aa18.5■□□□□ 0.55
CTR9-201ENST00000361367 PPM1GO15355 546 aaPredicted RBP18.49■□□□□ 0.55
CTR9-201ENST00000361367 TMF1P82094 1093 aa18.48■□□□□ 0.55
CTR9-201ENST00000361367 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.47■□□□□ 0.55
CTR9-201ENST00000361367 IFT140Q96RY7 1462 aa18.46■□□□□ 0.54
CTR9-201ENST00000361367 HAP1P54257 671 aaPredicted RBP18.45■□□□□ 0.54
CTR9-201ENST00000361367 POLA1P09884 1462 aaPredicted RBP18.45■□□□□ 0.54
CTR9-201ENST00000361367 RTL5Q5HYW3 569 aaPredicted RBP18.44■□□□□ 0.54
CTR9-201ENST00000361367 WASHC2CQ9Y4E1 1318 aa18.44■□□□□ 0.54
CTR9-201ENST00000361367 SAFB2Q14151 953 aaKnown RBP eCLIP18.43■□□□□ 0.54
CTR9-201ENST00000361367 LMOD2Q6P5Q4 547 aa18.43■□□□□ 0.54
CTR9-201ENST00000361367 CUX1P39880 1505 aa18.43■□□□□ 0.54
CTR9-201ENST00000361367 A0A0G2JS52 829 aa18.42■□□□□ 0.54
CTR9-201ENST00000361367 SRPK2P78362 688 aaKnown RBP18.4■□□□□ 0.54
CTR9-201ENST00000361367 STK26Q9P289 416 aa18.4■□□□□ 0.54
CTR9-201ENST00000361367 SENP3-EIF4A1A0A087X0R7 540 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms