RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 PKNOX2Q96KN3 472 aa8□□□□□ -1.13
VPS13B-203ENST00000358544 PNNQ9H307 717 aaKnown RBP8□□□□□ -1.13
VPS13B-203ENST00000358544 HSP90AA2PQ14568 343 aaPredicted RBP7.99□□□□□ -1.13
VPS13B-203ENST00000358544 FANCIQ9NVI1 1328 aa7.98□□□□□ -1.13
VPS13B-203ENST00000358544 B4GALNT3Q6L9W6 998 aa7.98□□□□□ -1.13
VPS13B-203ENST00000358544 VSIG10Q8N0Z9 540 aa7.98□□□□□ -1.13
VPS13B-203ENST00000358544 ATRXP46100 2492 aa7.97□□□□□ -1.13
VPS13B-203ENST00000358544 TMC1Q8TDI8 760 aa7.96□□□□□ -1.14
VPS13B-203ENST00000358544 HIRIP3Q9BW71 556 aaPredicted RBP7.95□□□□□ -1.14
VPS13B-203ENST00000358544 IPO9Q96P70 1041 aaKnown RBP7.95□□□□□ -1.14
VPS13B-203ENST00000358544 ARID4BQ4LE39 1312 aaPredicted RBP7.94□□□□□ -1.14
VPS13B-203ENST00000358544 CCER2I3L3R5 266 aa7.94□□□□□ -1.14
VPS13B-203ENST00000358544 ANO8Q9HCE9 1232 aaPredicted RBP7.93□□□□□ -1.14
VPS13B-203ENST00000358544 CLIP1P30622 1438 aa7.93□□□□□ -1.14
VPS13B-203ENST00000358544 SALL2Q9Y467 1007 aaPredicted RBP7.92□□□□□ -1.14
VPS13B-203ENST00000358544 DNTTIP2Q5QJE6 756 aaKnown RBP7.92□□□□□ -1.14
VPS13B-203ENST00000358544 USP35Q9P2H5 1018 aa7.91□□□□□ -1.14
VPS13B-203ENST00000358544 MAP1BP46821 2468 aaKnown RBP7.91□□□□□ -1.14
VPS13B-203ENST00000358544 RGS3P49796 1198 aa7.9□□□□□ -1.14
VPS13B-203ENST00000358544 CEP162Q5TB80 1403 aa7.9□□□□□ -1.14
VPS13B-203ENST00000358544 ARID3AQ99856 593 aa7.9□□□□□ -1.14
VPS13B-203ENST00000358544 MSNP26038 577 aaKnown RBP7.9□□□□□ -1.15
VPS13B-203ENST00000358544 CHAF1AQ13111 956 aaPredicted RBP7.89□□□□□ -1.15
VPS13B-203ENST00000358544 AMER1Q5JTC6 1135 aaPredicted RBP7.88□□□□□ -1.15
VPS13B-203ENST00000358544 GOLGA6L3A6NEY3 463 aa7.88□□□□□ -1.15
VPS13B-203ENST00000358544 TCERG1O14776 1098 aaKnown RBP7.87□□□□□ -1.15
VPS13B-203ENST00000358544 EIF4G2P78344 907 aaKnown RBP eCLIP7.86□□□□□ -1.158e-7■■■□□ 16.1
VPS13B-203ENST00000358544 PODXL2Q9NZ53 605 aa7.86□□□□□ -1.15
VPS13B-203ENST00000358544 WDR43Q15061 677 aaKnown RBP eCLIP7.86□□□□□ -1.153e-6■■■■□ 20.8
VPS13B-203ENST00000358544 MYH16Q9H6N6 1097 aa7.86□□□□□ -1.15
VPS13B-203ENST00000358544 HSCBQ8IWL3 235 aa7.85□□□□□ -1.15
VPS13B-203ENST00000358544 TIMELESSQ9UNS1 1208 aa7.85□□□□□ -1.15
VPS13B-203ENST00000358544 CNTRLQ7Z7A1 2325 aa7.84□□□□□ -1.15
VPS13B-203ENST00000358544 A0A0U1RQG5 324 aaPredicted RBP7.84□□□□□ -1.15
VPS13B-203ENST00000358544 BRPF3Q9ULD4 1205 aa7.84□□□□□ -1.15
VPS13B-203ENST00000358544 TNIKQ9UKE5 1360 aa7.83□□□□□ -1.16
VPS13B-203ENST00000358544 GOLGA4Q13439 2230 aaKnown RBP7.83□□□□□ -1.16
VPS13B-203ENST00000358544 SLKQ9H2G2 1235 aaPredicted RBP7.82□□□□□ -1.16
VPS13B-203ENST00000358544 SENP3-EIF4A1A0A087X0R7 540 aa7.82□□□□□ -1.16
VPS13B-203ENST00000358544 GZF1Q9H116 711 aaPredicted RBP7.81□□□□□ -1.16
VPS13B-203ENST00000358544 TNNT3P45378 269 aaPredicted RBP7.81□□□□□ -1.16
VPS13B-203ENST00000358544 P3H3Q8IVL6 736 aa7.81□□□□□ -1.16
VPS13B-203ENST00000358544 HSP90AB1P08238 724 aaKnown RBP7.8□□□□□ -1.16
VPS13B-203ENST00000358544 GBP4Q96PP9 640 aa7.8□□□□□ -1.16
VPS13B-203ENST00000358544 GSE1Q14687 1217 aa7.8□□□□□ -1.16
VPS13B-203ENST00000358544 PTMSP20962 102 aa7.8□□□□□ -1.16
VPS13B-203ENST00000358544 IL27Q8NEV9 243 aa7.8□□□□□ -1.16
VPS13B-203ENST00000358544 SLC24A1O60721 1099 aa7.79□□□□□ -1.16
VPS13B-203ENST00000358544 UBE2Q2Q8WVN8 375 aa7.79□□□□□ -1.16
VPS13B-203ENST00000358544 EEA1Q15075 1411 aa7.79□□□□□ -1.16
VPS13B-203ENST00000358544 GOLGA6L6A8MZA4 724 aa7.79□□□□□ -1.16
VPS13B-203ENST00000358544 KIAA2012Q0VF49 1180 aa7.78□□□□□ -1.16
VPS13B-203ENST00000358544 GOLGA3Q08378 1498 aa7.78□□□□□ -1.16
VPS13B-203ENST00000358544 SPRYD3Q8NCJ5 442 aa7.78□□□□□ -1.16
VPS13B-203ENST00000358544 SIN3AQ96ST3 1273 aa7.77□□□□□ -1.16
VPS13B-203ENST00000358544 KAT6BQ8WYB5 2073 aa7.77□□□□□ -1.17
VPS13B-203ENST00000358544 CASC1Q6TDU7 716 aa7.76□□□□□ -1.17
VPS13B-203ENST00000358544 ARID3CA6NKF2 412 aa7.76□□□□□ -1.17
VPS13B-203ENST00000358544 NRDCO43847 1150 aa7.75□□□□□ -1.17
VPS13B-203ENST00000358544 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.75□□□□□ -1.17
VPS13B-203ENST00000358544 ZCCHC6Q5VYS8 1495 aaKnown RBP7.75□□□□□ -1.17
VPS13B-203ENST00000358544 TPRNQ4KMQ1 711 aa7.75□□□□□ -1.17
VPS13B-203ENST00000358544 CHIC2Q9UKJ5 165 aa7.75□□□□□ -1.17
VPS13B-203ENST00000358544 FAM43AQ8N2R8 423 aa7.75□□□□□ -1.17
VPS13B-203ENST00000358544 DDX11L8A8MPP1 907 aa7.74□□□□□ -1.17
VPS13B-203ENST00000358544 FTSJ3Q8IY81 847 aaKnown RBP7.74□□□□□ -1.17
VPS13B-203ENST00000358544 RCAN3Q9UKA8 241 aa7.74□□□□□ -1.17
VPS13B-203ENST00000358544 KCNH8Q96L42 1107 aa7.74□□□□□ -1.17
VPS13B-203ENST00000358544 PDE4AP27815 886 aa7.73□□□□□ -1.17
VPS13B-203ENST00000358544 NUDCQ9Y266 331 aa7.73□□□□□ -1.17
VPS13B-203ENST00000358544 PLCB2Q00722 1185 aa7.73□□□□□ -1.17
VPS13B-203ENST00000358544 MS4A1P11836 297 aa7.73□□□□□ -1.17
VPS13B-203ENST00000358544 KNL1Q8NG31 2342 aa7.73□□□□□ -1.17
VPS13B-203ENST00000358544 HSPA5P11021 654 aaKnown RBP7.73□□□□□ -1.17
VPS13B-203ENST00000358544 RRP9O43818 475 aaKnown RBP7.72□□□□□ -1.17
VPS13B-203ENST00000358544 FAM13BQ9NYF5 915 aa7.72□□□□□ -1.17
VPS13B-203ENST00000358544 RRP7BPQ9NSQ0 103 aa7.72□□□□□ -1.17
VPS13B-203ENST00000358544 TPM2P07951 284 aa7.72□□□□□ -1.17
VPS13B-203ENST00000358544 ZRSR1Q15695 479 aaKnown RBP7.72□□□□□ -1.17
VPS13B-203ENST00000358544 RP1L1Q8IWN7 2480 aaPredicted RBP7.71□□□□□ -1.18
VPS13B-203ENST00000358544 ZNF777Q9ULD5 760 aaPredicted RBP7.71□□□□□ -1.18
VPS13B-203ENST00000358544 MAP7D2Q96T17 732 aa7.7□□□□□ -1.18
VPS13B-203ENST00000358544 ZBTB7CA1YPR0 619 aa7.7□□□□□ -1.18
VPS13B-203ENST00000358544 CCNB3Q8WWL7 1395 aa7.7□□□□□ -1.18
VPS13B-203ENST00000358544 FRAT1Q92837 279 aaPredicted RBP7.69□□□□□ -1.18
VPS13B-203ENST00000358544 SLC4A3P48751 1232 aa7.69□□□□□ -1.18
VPS13B-203ENST00000358544 MTERF4Q7Z6M4 381 aaKnown RBP7.69□□□□□ -1.18
VPS13B-203ENST00000358544 ZNF771Q7L3S4 317 aaPredicted RBP7.68□□□□□ -1.18
VPS13B-203ENST00000358544 KDM2AQ9Y2K7 1162 aa7.68□□□□□ -1.18
VPS13B-203ENST00000358544 CSPP1Q1MSJ5 1256 aa7.68□□□□□ -1.18
VPS13B-203ENST00000358544 DRC7Q8IY82 874 aa7.68□□□□□ -1.18
VPS13B-203ENST00000358544 ZBED9Q6R2W3 1325 aa7.68□□□□□ -1.18
VPS13B-203ENST00000358544 NFKBIBQ15653 356 aa7.68□□□□□ -1.18
VPS13B-203ENST00000358544 SYAP1Q96A49 352 aaPredicted RBP7.67□□□□□ -1.18
VPS13B-203ENST00000358544 SETD5Q9C0A6 1442 aa7.67□□□□□ -1.18
VPS13B-203ENST00000358544 KNSTRNQ9Y448 316 aa7.67□□□□□ -1.18
VPS13B-203ENST00000358544 MTUS2Q5JR59 1369 aa7.67□□□□□ -1.18
VPS13B-203ENST00000358544 PDE3BQ13370 1112 aa7.67□□□□□ -1.18
VPS13B-203ENST00000358544 FAM161AQ3B820 660 aa7.67□□□□□ -1.18
VPS13B-203ENST00000358544 PAK3O75914 559 aaPredicted RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms