RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 CHMP7Q8WUX9 453 aaPredicted RBP28.96■■■□□ 2.23
SMARCD3-202ENST00000356800 CHD1O14646 1710 aa28.91■■■□□ 2.22
SMARCD3-202ENST00000356800 FBLN2P98095 1184 aa28.9■■■□□ 2.22
SMARCD3-202ENST00000356800 CEP170Q5SW79 1584 aa28.89■■■□□ 2.21
SMARCD3-202ENST00000356800 ARHGAP35Q9NRY4 1499 aa28.87■■■□□ 2.21
SMARCD3-202ENST00000356800 IQGAP2Q13576 1575 aa28.85■■■□□ 2.21
SMARCD3-202ENST00000356800 NUP160Q12769 1436 aa28.84■■■□□ 2.21
SMARCD3-202ENST00000356800 KIAA0586Q9BVV6 1533 aa28.82■■■□□ 2.2
SMARCD3-202ENST00000356800 ARAP1Q96P48 1450 aa28.82■■■□□ 2.2
SMARCD3-202ENST00000356800 EFCAB5A4FU69 1503 aa28.77■■■□□ 2.2
SMARCD3-202ENST00000356800 SAMD9Q5K651 1589 aa28.75■■■□□ 2.19
SMARCD3-202ENST00000356800 VPS8Q8N3P4 1428 aa28.71■■■□□ 2.19
SMARCD3-202ENST00000356800 UGGT2Q9NYU1 1516 aa28.71■■■□□ 2.19
SMARCD3-202ENST00000356800 P3H3Q8IVL6 736 aa28.66■■■□□ 2.18
SMARCD3-202ENST00000356800 FHOD3Q2V2M9 1422 aa28.65■■■□□ 2.18
SMARCD3-202ENST00000356800 DISP1Q96F81 1524 aa28.6■■■□□ 2.17
SMARCD3-202ENST00000356800 KIAA0556O60303 1618 aa28.57■■■□□ 2.16
SMARCD3-202ENST00000356800 JPH4Q96JJ6 628 aa28.57■■■□□ 2.16
SMARCD3-202ENST00000356800 CLASP1Q7Z460 1538 aa28.56■■■□□ 2.16
SMARCD3-202ENST00000356800 SHROOM2Q13796 1616 aa28.53■■■□□ 2.16
SMARCD3-202ENST00000356800 PCF11O94913 1555 aaKnown RBP28.48■■■□□ 2.15
SMARCD3-202ENST00000356800 FMN1Q68DA7 1419 aa28.47■■■□□ 2.15
SMARCD3-202ENST00000356800 CARMIL2Q6F5E8 1435 aa28.43■■■□□ 2.14
SMARCD3-202ENST00000356800 PRG4Q92954 1404 aaPredicted RBP28.43■■■□□ 2.14
SMARCD3-202ENST00000356800 CASKIN1Q8WXD9 1431 aa28.4■■■□□ 2.14
SMARCD3-202ENST00000356800 PPARGC1BQ86YN6 1023 aaKnown RBP28.39■■■□□ 2.14
SMARCD3-202ENST00000356800 FYCO1Q9BQS8 1478 aa28.39■■■□□ 2.14
SMARCD3-202ENST00000356800 ERCC6L2Q5T890 1561 aa28.36■■■□□ 2.13
SMARCD3-202ENST00000356800 OSCARQ8IYS5 282 aa28.35■■■□□ 2.13
SMARCD3-202ENST00000356800 LRRIQ1Q96JM4 1722 aa28.32■■■□□ 2.12
SMARCD3-202ENST00000356800 APLP2Q06481 763 aa28.31■■■□□ 2.12
SMARCD3-202ENST00000356800 TTBK1Q5TCY1 1321 aaPredicted RBP28.29■■■□□ 2.12
SMARCD3-202ENST00000356800 TIAM1Q13009 1591 aa28.28■■■□□ 2.12
SMARCD3-202ENST00000356800 MAP3K1Q13233 1512 aa28.28■■■□□ 2.12
SMARCD3-202ENST00000356800 CFAP43Q8NDM7 1665 aa28.28■■■□□ 2.12
SMARCD3-202ENST00000356800 ATP1B4Q9UN42 357 aaPredicted RBP28.26■■■□□ 2.12
SMARCD3-202ENST00000356800 HECW1Q76N89 1606 aa28.25■■■□□ 2.11
SMARCD3-202ENST00000356800 RAPGEF6Q8TEU7 1601 aa28.25■■■□□ 2.11
SMARCD3-202ENST00000356800 KANK4Q5T7N3 995 aaPredicted RBP28.22■■■□□ 2.11
SMARCD3-202ENST00000356800 PLB1Q6P1J6 1458 aa28.21■■■□□ 2.11
SMARCD3-202ENST00000356800 PTPRGP23470 1445 aa28.2■■■□□ 2.11
SMARCD3-202ENST00000356800 ABCA8O94911 1581 aa28.19■■■□□ 2.1
SMARCD3-202ENST00000356800 NUP153P49790 1475 aaKnown RBP28.17■■■□□ 2.1
SMARCD3-202ENST00000356800 EPRSP07814 1512 aaKnown RBP28.15■■■□□ 2.1
SMARCD3-202ENST00000356800 CCDC18Q5T9S5 1454 aa28.14■■■□□ 2.09
SMARCD3-202ENST00000356800 LRRC9Q6ZRR7 1453 aa28.14■■■□□ 2.09
SMARCD3-202ENST00000356800 CDK13Q14004 1512 aaKnown RBP28.12■■■□□ 2.09
SMARCD3-202ENST00000356800 TRIM26Q12899 539 aaPredicted RBP28.08■■■□□ 2.09
SMARCD3-202ENST00000356800 ARID3CA6NKF2 412 aa28.06■■■□□ 2.08
SMARCD3-202ENST00000356800 UACAQ9BZF9 1416 aa28.05■■■□□ 2.08
SMARCD3-202ENST00000356800 MAGI3Q5TCQ9 1506 aa28.04■■■□□ 2.08
SMARCD3-202ENST00000356800 ABCC2Q92887 1545 aa28■■■□□ 2.07
SMARCD3-202ENST00000356800 PCGF6Q9BYE7 350 aa27.99■■■□□ 2.07
SMARCD3-202ENST00000356800 MTUS2Q5JR59 1369 aa27.98■■■□□ 2.07
SMARCD3-202ENST00000356800 EHBP1L1Q8N3D4 1523 aa27.98■■■□□ 2.07
SMARCD3-202ENST00000356800 ATP10BO94823 1461 aa27.97■■■□□ 2.07
SMARCD3-202ENST00000356800 ARHGEF11O15085 1522 aa27.94■■■□□ 2.06
SMARCD3-202ENST00000356800 UHRF1BP1LA0JNW5 1464 aa27.94■■■□□ 2.06
SMARCD3-202ENST00000356800 SUPT6HQ7KZ85 1726 aaKnown RBP27.9■■■□□ 2.06
SMARCD3-202ENST00000356800 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.9■■■□□ 2.06
SMARCD3-202ENST00000356800 HNRNPUL2Q1KMD3 747 aaKnown RBP27.9■■■□□ 2.06
SMARCD3-202ENST00000356800 ADCY10Q96PN6 1610 aa27.9■■■□□ 2.06
SMARCD3-202ENST00000356800 PHLDB1Q86UU1 1377 aa27.87■■■□□ 2.05
SMARCD3-202ENST00000356800 RIMBP3CA6NJZ7 1639 aa27.86■■■□□ 2.05
SMARCD3-202ENST00000356800 RIMBP3BA6NNM3 1639 aa27.86■■■□□ 2.05
SMARCD3-202ENST00000356800 RIMBP3Q9UFD9 1639 aa27.86■■■□□ 2.05
SMARCD3-202ENST00000356800 NCOA2Q15596 1464 aa27.85■■■□□ 2.05
SMARCD3-202ENST00000356800 CDK11AQ9UQ88 783 aaPredicted RBP27.84■■■□□ 2.05
SMARCD3-202ENST00000356800 ZCCHC11Q5TAX3 1644 aaKnown RBP27.84■■■□□ 2.05
SMARCD3-202ENST00000356800 KDM5BQ9UGL1 1544 aa27.84■■■□□ 2.05
SMARCD3-202ENST00000356800 TROQ12816 1431 aaPredicted RBP27.84■■■□□ 2.05
SMARCD3-202ENST00000356800 RRBP1Q9P2E9 1410 aaKnown RBP27.81■■■□□ 2.04
SMARCD3-202ENST00000356800 KIF14Q15058 1648 aa27.77■■■□□ 2.04
SMARCD3-202ENST00000356800 PLEKHD1A6NEE1 506 aa27.76■■■□□ 2.03
SMARCD3-202ENST00000356800 CCNB3Q8WWL7 1395 aa27.72■■■□□ 2.03
SMARCD3-202ENST00000356800 MYOM3Q5VTT5 1437 aa27.71■■■□□ 2.03
SMARCD3-202ENST00000356800 FGD6Q6ZV73 1430 aa27.69■■■□□ 2.02
SMARCD3-202ENST00000356800 ABCC10Q5T3U5 1492 aa27.65■■■□□ 2.02
SMARCD3-202ENST00000356800 CYB5RLQ6IPT4 315 aa27.64■■■□□ 2.02
SMARCD3-202ENST00000356800 CDC42BPAQ5VT25 1732 aa27.6■■■□□ 2.01
SMARCD3-202ENST00000356800 PTPN23Q9H3S7 1636 aa27.59■■■□□ 2.01
SMARCD3-202ENST00000356800 ITSN2Q9NZM3 1697 aa27.59■■■□□ 2.01
SMARCD3-202ENST00000356800 GPATCH8Q9UKJ3 1502 aaKnown RBP27.58■■■□□ 2.01
SMARCD3-202ENST00000356800 MIA2Q96PC5 1412 aa27.57■■■□□ 2
SMARCD3-202ENST00000356800 WDR7Q9Y4E6 1490 aa27.57■■■□□ 2
SMARCD3-202ENST00000356800 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.56■■■□□ 2
SMARCD3-202ENST00000356800 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.56■■■□□ 2
SMARCD3-202ENST00000356800 TTC37Q6PGP7 1564 aa27.56■■■□□ 2
SMARCD3-202ENST00000356800 FAM50AQ14320 339 aaKnown RBP27.56■■■□□ 2
SMARCD3-202ENST00000356800 ASXL2Q76L83 1435 aa27.55■■■□□ 2
SMARCD3-202ENST00000356800 TCOF1Q13428 1488 aaKnown RBP27.54■■■□□ 2
SMARCD3-202ENST00000356800 NPM1P06748 294 aaKnown RBP eCLIP27.54■■■□□ 2
SMARCD3-202ENST00000356800 KCNH8Q96L42 1107 aa27.52■■■□□ 2
SMARCD3-202ENST00000356800 PREX2Q70Z35 1606 aa27.49■■□□□ 1.99
SMARCD3-202ENST00000356800 CDC42BPBQ9Y5S2 1711 aa27.48■■□□□ 1.99
SMARCD3-202ENST00000356800 MYO5CQ9NQX4 1742 aa27.46■■□□□ 1.99
SMARCD3-202ENST00000356800 CFDP1Q9UEE9 299 aaPredicted RBP27.46■■□□□ 1.99
SMARCD3-202ENST00000356800 ITGAEP38570 1179 aa27.45■■□□□ 1.98
SMARCD3-202ENST00000356800 ZNF644Q9H582 1327 aaPredicted RBP27.44■■□□□ 1.98
SMARCD3-202ENST00000356800 MAPKBP1O60336 1514 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms