RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 CHGAP10645 457 aaKnown RBP17.43■□□□□ 0.38
PCDHB11-201ENST00000354757 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
PCDHB11-201ENST00000354757 FANCD2Q9BXW9 1451 aa17.41■□□□□ 0.38
PCDHB11-201ENST00000354757 TONSLQ96HA7 1378 aa17.39■□□□□ 0.37
PCDHB11-201ENST00000354757 CFDP1Q9UEE9 299 aaPredicted RBP17.38■□□□□ 0.37
PCDHB11-201ENST00000354757 NCAPD3P42695 1498 aa17.37■□□□□ 0.37
PCDHB11-201ENST00000354757 KDM2AQ9Y2K7 1162 aa17.36■□□□□ 0.37
PCDHB11-201ENST00000354757 DDX10Q13206 875 aaKnown RBP17.34■□□□□ 0.37
PCDHB11-201ENST00000354757 BCANQ96GW7 911 aa17.34■□□□□ 0.37
PCDHB11-201ENST00000354757 NESP48681 1621 aa17.33■□□□□ 0.36
PCDHB11-201ENST00000354757 BICRAQ9NZM4 1560 aa17.32■□□□□ 0.36
PCDHB11-201ENST00000354757 ANP32CO43423 234 aa17.31■□□□□ 0.36
PCDHB11-201ENST00000354757 RAD54L2Q9Y4B4 1467 aa17.31■□□□□ 0.36
PCDHB11-201ENST00000354757 VPS8Q8N3P4 1428 aa17.31■□□□□ 0.36
PCDHB11-201ENST00000354757 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
PCDHB11-201ENST00000354757 FHOD3Q2V2M9 1422 aa17.28■□□□□ 0.36
PCDHB11-201ENST00000354757 RGL3Q3MIN7 710 aa17.25■□□□□ 0.35
PCDHB11-201ENST00000354757 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
PCDHB11-201ENST00000354757 FHAD1B1AJZ9 1412 aa17.23■□□□□ 0.35
PCDHB11-201ENST00000354757 ESF1Q9H501 851 aaKnown RBP17.23■□□□□ 0.35
PCDHB11-201ENST00000354757 CCNB3Q8WWL7 1395 aa17.23■□□□□ 0.35
PCDHB11-201ENST00000354757 CC2D2AQ9P2K1 1620 aa17.21■□□□□ 0.35
PCDHB11-201ENST00000354757 IGF1RP08069 1367 aa17.21■□□□□ 0.34
PCDHB11-201ENST00000354757 STAG3Q9UJ98 1225 aa17.2■□□□□ 0.34
PCDHB11-201ENST00000354757 JPH4Q96JJ6 628 aa17.18■□□□□ 0.34
PCDHB11-201ENST00000354757 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.34
PCDHB11-201ENST00000354757 FOXD1Q16676 465 aa17.14■□□□□ 0.33
PCDHB11-201ENST00000354757 ERICH6Q7L0X2 663 aa17.14■□□□□ 0.33
PCDHB11-201ENST00000354757 CFTRP13569 1480 aa17.13■□□□□ 0.33
PCDHB11-201ENST00000354757 SYNJ1O43426 1573 aa17.12■□□□□ 0.33
PCDHB11-201ENST00000354757 MIER1Q8N108 512 aa17.12■□□□□ 0.33
PCDHB11-201ENST00000354757 SENP3-EIF4A1A0A087X0R7 540 aa17.09■□□□□ 0.33
PCDHB11-201ENST00000354757 SALL2Q9Y467 1007 aaPredicted RBP17.08■□□□□ 0.32
PCDHB11-201ENST00000354757 GAPVD1Q14C86 1478 aa17.08■□□□□ 0.32
PCDHB11-201ENST00000354757 FAM9BQ8IZU0 186 aa17.06■□□□□ 0.32
PCDHB11-201ENST00000354757 CARMIL2Q6F5E8 1435 aa17.06■□□□□ 0.32
PCDHB11-201ENST00000354757 FMN1Q68DA7 1419 aa17.05■□□□□ 0.32
PCDHB11-201ENST00000354757 UNC13AQ9UPW8 1703 aa17.03■□□□□ 0.32
PCDHB11-201ENST00000354757 ARHGAP35Q9NRY4 1499 aa17.02■□□□□ 0.31
PCDHB11-201ENST00000354757 ARID4BQ4LE39 1312 aaPredicted RBP17■□□□□ 0.31
PCDHB11-201ENST00000354757 HNRNPMP52272 730 aaKnown RBP eCLIP16.99■□□□□ 0.31
PCDHB11-201ENST00000354757 EIF4G2P78344 907 aaKnown RBP eCLIP16.99■□□□□ 0.31
PCDHB11-201ENST00000354757 MLECQ14165 292 aa16.99■□□□□ 0.31
PCDHB11-201ENST00000354757 CUX1P39880 1505 aa16.99■□□□□ 0.31
PCDHB11-201ENST00000354757 HNRNPUQ00839 825 aaKnown RBP eCLIP16.98■□□□□ 0.31
PCDHB11-201ENST00000354757 HMGXB3Q12766 1538 aa16.98■□□□□ 0.31
PCDHB11-201ENST00000354757 RAB3GAP2Q9H2M9 1393 aa16.97■□□□□ 0.31
PCDHB11-201ENST00000354757 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
PCDHB11-201ENST00000354757 GGT6Q6P531 493 aa16.94■□□□□ 0.3
PCDHB11-201ENST00000354757 CYB5RLQ6IPT4 315 aa16.93■□□□□ 0.3
PCDHB11-201ENST00000354757 SETD5Q9C0A6 1442 aa16.93■□□□□ 0.3
PCDHB11-201ENST00000354757 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
PCDHB11-201ENST00000354757 PLEKHG5O94827 1062 aa16.92■□□□□ 0.3
PCDHB11-201ENST00000354757 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
PCDHB11-201ENST00000354757 PKD2Q13563 968 aa16.92■□□□□ 0.3
PCDHB11-201ENST00000354757 BCL11AQ9H165 835 aa16.92■□□□□ 0.3
PCDHB11-201ENST00000354757 SLC24A1O60721 1099 aa16.91■□□□□ 0.3
PCDHB11-201ENST00000354757 DCAF11Q8TEB1 546 aa16.9■□□□□ 0.3
PCDHB11-201ENST00000354757 CARD11Q9BXL7 1154 aa16.89■□□□□ 0.3
PCDHB11-201ENST00000354757 MRS2Q9HD23 443 aa16.89■□□□□ 0.29
PCDHB11-201ENST00000354757 ZNF644Q9H582 1327 aaPredicted RBP16.89■□□□□ 0.29
PCDHB11-201ENST00000354757 PTPRGP23470 1445 aa16.88■□□□□ 0.29
PCDHB11-201ENST00000354757 TMC1Q8TDI8 760 aa16.87■□□□□ 0.29
PCDHB11-201ENST00000354757 ARAP1Q96P48 1450 aa16.87■□□□□ 0.29
PCDHB11-201ENST00000354757 PPP1R15AO75807 674 aaPredicted RBP16.86■□□□□ 0.29
PCDHB11-201ENST00000354757 EFCAB2Q5VUJ9 269 aa16.86■□□□□ 0.29
PCDHB11-201ENST00000354757 MPHOSPH9Q99550 1183 aa16.85■□□□□ 0.29
PCDHB11-201ENST00000354757 KIF21BO75037 1637 aa16.84■□□□□ 0.29
PCDHB11-201ENST00000354757 TOP2BQ02880 1626 aa16.83■□□□□ 0.28
PCDHB11-201ENST00000354757 OSCARQ8IYS5 282 aa16.82■□□□□ 0.28
PCDHB11-201ENST00000354757 NUP155O75694 1391 aa16.82■□□□□ 0.28
PCDHB11-201ENST00000354757 PRXQ9BXM0 1461 aa16.81■□□□□ 0.28
PCDHB11-201ENST00000354757 CLSPNQ9HAW4 1339 aa16.8■□□□□ 0.28
PCDHB11-201ENST00000354757 KIF3BO15066 747 aa16.8■□□□□ 0.28
PCDHB11-201ENST00000354757 PHLDB1Q86UU1 1377 aa16.79■□□□□ 0.28
PCDHB11-201ENST00000354757 MRC2Q9UBG0 1479 aa16.79■□□□□ 0.28
PCDHB11-201ENST00000354757 FKBP8Q14318 412 aa16.78■□□□□ 0.28
PCDHB11-201ENST00000354757 GRIN2BQ13224 1484 aa16.78■□□□□ 0.28
PCDHB11-201ENST00000354757 IRX6P78412 446 aaPredicted RBP16.77■□□□□ 0.28
PCDHB11-201ENST00000354757 SAFB2Q14151 953 aaKnown RBP eCLIP16.76■□□□□ 0.27
PCDHB11-201ENST00000354757 CCDC18Q5T9S5 1454 aa16.76■□□□□ 0.27
PCDHB11-201ENST00000354757 L3MBTL2Q969R5 705 aa16.74■□□□□ 0.27
PCDHB11-201ENST00000354757 CANXP27824 592 aaKnown RBP16.73■□□□□ 0.27
PCDHB11-201ENST00000354757 ANKRD30AQ9BXX3 1397 aa16.72■□□□□ 0.27
PCDHB11-201ENST00000354757 SPAG9O60271 1321 aaKnown RBP16.72■□□□□ 0.27
PCDHB11-201ENST00000354757 NEFMP07197 916 aa16.72■□□□□ 0.27
PCDHB11-201ENST00000354757 NUTM2DQ5VT03 806 aaPredicted RBP16.72■□□□□ 0.27
PCDHB11-201ENST00000354757 PEG3Q9GZU2 1588 aa16.72■□□□□ 0.27
PCDHB11-201ENST00000354757 DHX57Q6P158 1386 aaKnown RBP16.71■□□□□ 0.27
PCDHB11-201ENST00000354757 HSPA5P11021 654 aaKnown RBP16.7■□□□□ 0.26
PCDHB11-201ENST00000354757 TNNT2P45379 298 aaPredicted RBP16.7■□□□□ 0.26
PCDHB11-201ENST00000354757 SNAPC4Q5SXM2 1469 aa16.69■□□□□ 0.26
PCDHB11-201ENST00000354757 DNMBPQ6XZF7 1577 aa16.68■□□□□ 0.26
PCDHB11-201ENST00000354757 URB2Q14146 1524 aaKnown RBP16.67■□□□□ 0.26
PCDHB11-201ENST00000354757 C14orf37Q86TY3 774 aa16.66■□□□□ 0.26
PCDHB11-201ENST00000354757 CC2D1BQ5T0F9 858 aaKnown RBP16.66■□□□□ 0.26
PCDHB11-201ENST00000354757 STK26Q9P289 416 aa16.66■□□□□ 0.26
PCDHB11-201ENST00000354757 WDR43Q15061 677 aaKnown RBP eCLIP16.65■□□□□ 0.26
PCDHB11-201ENST00000354757 ERICH3Q5RHP9 1530 aa16.65■□□□□ 0.26
PCDHB11-201ENST00000354757 PRG4Q92954 1404 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms