RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CTTNBP2Q8WZ74 1663 aa32.85■■■□□ 2.85
UPF3A-201ENST00000351487 EFCAB5A4FU69 1503 aa32.85■■■□□ 2.85
UPF3A-201ENST00000351487 LRRC9Q6ZRR7 1453 aa32.82■■■□□ 2.84
UPF3A-201ENST00000351487 PCF11O94913 1555 aaKnown RBP32.82■■■□□ 2.84
UPF3A-201ENST00000351487 ABCA5Q8WWZ7 1642 aa32.77■■■□□ 2.84
UPF3A-201ENST00000351487 SCAF1Q9H7N4 1312 aaKnown RBP32.76■■■□□ 2.83
UPF3A-201ENST00000351487 PDS5BQ9NTI5 1447 aa32.72■■■□□ 2.83
UPF3A-201ENST00000351487 FYCO1Q9BQS8 1478 aa32.71■■■□□ 2.83
UPF3A-201ENST00000351487 AQRO60306 1485 aaKnown RBP eCLIP32.7■■■□□ 2.833e-6■□□□□ 10.3
UPF3A-201ENST00000351487 FHOD3Q2V2M9 1422 aa32.66■■■□□ 2.82
UPF3A-201ENST00000351487 ACIN1Q9UKV3 1341 aaKnown RBP32.65■■■□□ 2.82
UPF3A-201ENST00000351487 KIF21AQ7Z4S6 1674 aa32.64■■■□□ 2.82
UPF3A-201ENST00000351487 CASKIN1Q8WXD9 1431 aa32.64■■■□□ 2.82
UPF3A-201ENST00000351487 PHLDB1Q86UU1 1377 aa32.61■■■□□ 2.81
UPF3A-201ENST00000351487 GAPVD1Q14C86 1478 aa32.59■■■□□ 2.81
UPF3A-201ENST00000351487 SAMD9Q5K651 1589 aa32.56■■■□□ 2.8
UPF3A-201ENST00000351487 CENPBP07199 599 aaPredicted RBP32.56■■■□□ 2.8
UPF3A-201ENST00000351487 NEUROD1Q13562 356 aa32.55■■■□□ 2.8
UPF3A-201ENST00000351487 P3H3Q8IVL6 736 aa32.55■■■□□ 2.8
UPF3A-201ENST00000351487 FMN1Q68DA7 1419 aa32.54■■■□□ 2.8
UPF3A-201ENST00000351487 TARBP1Q13395 1621 aaKnown RBP32.52■■■□□ 2.8
UPF3A-201ENST00000351487 TDRD9Q8NDG6 1382 aaKnown RBP32.52■■■□□ 2.8
UPF3A-201ENST00000351487 RAB3GAP2Q9H2M9 1393 aa32.51■■■□□ 2.8
UPF3A-201ENST00000351487 SNAPC4Q5SXM2 1469 aa32.51■■■□□ 2.79
UPF3A-201ENST00000351487 ITGAEP38570 1179 aa32.46■■■□□ 2.79
UPF3A-201ENST00000351487 DNAJC5BQ9UF47 199 aa32.46■■■□□ 2.79
UPF3A-201ENST00000351487 SETD5Q9C0A6 1442 aa32.45■■■□□ 2.79
UPF3A-201ENST00000351487 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.44■■■□□ 2.78
UPF3A-201ENST00000351487 MAPKBP1O60336 1514 aa32.43■■■□□ 2.78
UPF3A-201ENST00000351487 THOC2Q8NI27 1593 aaKnown RBP32.39■■■□□ 2.78
UPF3A-201ENST00000351487 MIER1Q8N108 512 aa32.38■■■□□ 2.77
UPF3A-201ENST00000351487 PBRM1Q86U86 1689 aa32.37■■■□□ 2.77
UPF3A-201ENST00000351487 LRRIQ1Q96JM4 1722 aa32.36■■■□□ 2.77
UPF3A-201ENST00000351487 ATP1B4Q9UN42 357 aaPredicted RBP32.35■■■□□ 2.77
UPF3A-201ENST00000351487 GRIN2BQ13224 1484 aa32.33■■■□□ 2.77
UPF3A-201ENST00000351487 FAM50AQ14320 339 aaKnown RBP32.32■■■□□ 2.76
UPF3A-201ENST00000351487 FGD6Q6ZV73 1430 aa32.27■■■□□ 2.76
UPF3A-201ENST00000351487 MRC2Q9UBG0 1479 aa32.26■■■□□ 2.76
UPF3A-201ENST00000351487 ADAMTS12P58397 1594 aa32.24■■■□□ 2.75
UPF3A-201ENST00000351487 MTUS2Q5JR59 1369 aa32.22■■■□□ 2.75
UPF3A-201ENST00000351487 EHBP1L1Q8N3D4 1523 aa32.2■■■□□ 2.75
UPF3A-201ENST00000351487 SUPT6HQ7KZ85 1726 aaKnown RBP32.19■■■□□ 2.74
UPF3A-201ENST00000351487 IQGAP2Q13576 1575 aa32.17■■■□□ 2.74
UPF3A-201ENST00000351487 GTF3C3Q9Y5Q9 886 aa32.16■■■□□ 2.74
UPF3A-201ENST00000351487 NCOA2Q15596 1464 aa32.14■■■□□ 2.74
UPF3A-201ENST00000351487 CCDC18Q5T9S5 1454 aa32.13■■■□□ 2.73
UPF3A-201ENST00000351487 MYOM3Q5VTT5 1437 aa32.11■■■□□ 2.73
UPF3A-201ENST00000351487 ARHGEF11O15085 1522 aa32.1■■■□□ 2.73
UPF3A-201ENST00000351487 HECW1Q76N89 1606 aa32.1■■■□□ 2.73
UPF3A-201ENST00000351487 YTHDC1Q96MU7 727 aaKnown RBP32.08■■■□□ 2.73
UPF3A-201ENST00000351487 UGGT2Q9NYU1 1516 aa32.08■■■□□ 2.73
UPF3A-201ENST00000351487 WDR62O43379 1518 aa32.07■■■□□ 2.72
UPF3A-201ENST00000351487 IFT140Q96RY7 1462 aa32.05■■■□□ 2.72
UPF3A-201ENST00000351487 HFM1A2PYH4 1435 aa32.05■■■□□ 2.72
UPF3A-201ENST00000351487 MAGI3Q5TCQ9 1506 aa32.04■■■□□ 2.72
UPF3A-201ENST00000351487 TIMELESSQ9UNS1 1208 aa32.03■■■□□ 2.72
UPF3A-201ENST00000351487 PTPN23Q9H3S7 1636 aa32.02■■■□□ 2.72
UPF3A-201ENST00000351487 PTPRKQ15262 1439 aa32■■■□□ 2.71
UPF3A-201ENST00000351487 EPRSP07814 1512 aaKnown RBP31.95■■■□□ 2.7
UPF3A-201ENST00000351487 SIN3AQ96ST3 1273 aa31.94■■■□□ 2.7
UPF3A-201ENST00000351487 TCOF1Q13428 1488 aaKnown RBP31.93■■■□□ 2.7
UPF3A-201ENST00000351487 ZNF608Q9ULD9 1512 aaPredicted RBP31.93■■■□□ 2.7
UPF3A-201ENST00000351487 UACAQ9BZF9 1416 aa31.93■■■□□ 2.7
UPF3A-201ENST00000351487 PELP1Q8IZL8 1130 aaKnown RBP31.92■■■□□ 2.7
UPF3A-201ENST00000351487 NAIPQ13075 1403 aa31.91■■■□□ 2.7
UPF3A-201ENST00000351487 KIAA0586Q9BVV6 1533 aa31.85■■■□□ 2.69
UPF3A-201ENST00000351487 EIF4G3O43432 1585 aaKnown RBP31.85■■■□□ 2.69
UPF3A-201ENST00000351487 GCC2Q8IWJ2 1684 aa31.84■■■□□ 2.69
UPF3A-201ENST00000351487 KIAA0556O60303 1618 aa31.84■■■□□ 2.69
UPF3A-201ENST00000351487 CDK13Q14004 1512 aaKnown RBP31.83■■■□□ 2.69
UPF3A-201ENST00000351487 AKNAQ7Z591 1439 aa31.8■■■□□ 2.68
UPF3A-201ENST00000351487 MIA2Q96PC5 1412 aa31.8■■■□□ 2.68
UPF3A-201ENST00000351487 DISP1Q96F81 1524 aa31.79■■■□□ 2.68
UPF3A-201ENST00000351487 GRIN2AQ12879 1464 aa31.78■■■□□ 2.68
UPF3A-201ENST00000351487 PPP1R15AO75807 674 aaPredicted RBP31.77■■■□□ 2.68
UPF3A-201ENST00000351487 MAGI1Q96QZ7 1491 aaPredicted RBP31.69■■■□□ 2.66
UPF3A-201ENST00000351487 RAPGEF6Q8TEU7 1601 aa31.68■■■□□ 2.66
UPF3A-201ENST00000351487 TONSLQ96HA7 1378 aa31.68■■■□□ 2.66
UPF3A-201ENST00000351487 NUP153P49790 1475 aaKnown RBP31.65■■■□□ 2.66
UPF3A-201ENST00000351487 ERCC6Q03468 1493 aa31.64■■■□□ 2.66
UPF3A-201ENST00000351487 KDM5BQ9UGL1 1544 aa31.59■■■□□ 2.65
UPF3A-201ENST00000351487 SYNJ2O15056 1496 aa31.58■■■□□ 2.65
UPF3A-201ENST00000351487 CEP170Q5SW79 1584 aa31.58■■■□□ 2.65
UPF3A-201ENST00000351487 KDM6BO15054 1643 aa31.57■■■□□ 2.64
UPF3A-201ENST00000351487 DENND4BO75064 1496 aaPredicted RBP31.56■■■□□ 2.64
UPF3A-201ENST00000351487 DNMT1P26358 1616 aaKnown RBP31.55■■■□□ 2.64
UPF3A-201ENST00000351487 RRP7BPQ9NSQ0 103 aa31.55■■■□□ 2.64
UPF3A-201ENST00000351487 ROCK1Q13464 1354 aa31.51■■■□□ 2.63
UPF3A-201ENST00000351487 CHIC2Q9UKJ5 165 aa31.51■■■□□ 2.63
UPF3A-201ENST00000351487 DAPK1P53355 1430 aa31.5■■■□□ 2.63
UPF3A-201ENST00000351487 DDX10Q13206 875 aaKnown RBP31.5■■■□□ 2.63
UPF3A-201ENST00000351487 ARID3CA6NKF2 412 aa31.48■■■□□ 2.63
UPF3A-201ENST00000351487 NUP160Q12769 1436 aa31.46■■■□□ 2.63
UPF3A-201ENST00000351487 CDK11AQ9UQ88 783 aaPredicted RBP31.45■■■□□ 2.63
UPF3A-201ENST00000351487 ADCY10Q96PN6 1610 aa31.45■■■□□ 2.62
UPF3A-201ENST00000351487 ITSN2Q9NZM3 1697 aa31.44■■■□□ 2.62
UPF3A-201ENST00000351487 TROQ12816 1431 aaPredicted RBP31.43■■■□□ 2.62
UPF3A-201ENST00000351487 ABCC5O15440 1437 aa31.43■■■□□ 2.62
UPF3A-201ENST00000351487 CHMP7Q8WUX9 453 aaPredicted RBP31.41■■■□□ 2.62
UPF3A-201ENST00000351487 PLB1Q6P1J6 1458 aa31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms