RNA–Protein interactions for RNA: ENST00000347613.8

CLCN3-201, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLCN3, Length 3,635 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-201ENST00000347613 CCNB3Q8WWL7 1395 aa8.98□□□□□ -0.97
CLCN3-201ENST00000347613 TOPBP1Q92547 1522 aa8.97□□□□□ -0.97
CLCN3-201ENST00000347613 FHOD3Q2V2M9 1422 aa8.97□□□□□ -0.97
CLCN3-201ENST00000347613 PCF11O94913 1555 aaKnown RBP8.97□□□□□ -0.97
CLCN3-201ENST00000347613 MAPKBP1O60336 1514 aa8.97□□□□□ -0.97
CLCN3-201ENST00000347613 URB2Q14146 1524 aaKnown RBP8.96□□□□□ -0.98
CLCN3-201ENST00000347613 LRRIQ1Q96JM4 1722 aa8.96□□□□□ -0.98
CLCN3-201ENST00000347613 RAB3GAP2Q9H2M9 1393 aa8.96□□□□□ -0.98
CLCN3-201ENST00000347613 LRRC9Q6ZRR7 1453 aa8.95□□□□□ -0.98
CLCN3-201ENST00000347613 KCNH8Q96L42 1107 aa8.94□□□□□ -0.98
CLCN3-201ENST00000347613 ATP1B4Q9UN42 357 aaPredicted RBP8.94□□□□□ -0.98
CLCN3-201ENST00000347613 SIN3AQ96ST3 1273 aa8.94□□□□□ -0.98
CLCN3-201ENST00000347613 DNMBPQ6XZF7 1577 aa8.94□□□□□ -0.98
CLCN3-201ENST00000347613 TDRD9Q8NDG6 1382 aaKnown RBP8.94□□□□□ -0.98
CLCN3-201ENST00000347613 ABCA10Q8WWZ4 1543 aa8.93□□□□□ -0.98
CLCN3-201ENST00000347613 WDR97A6NE52 1622 aa8.91□□□□□ -0.98
CLCN3-201ENST00000347613 CFAP43Q8NDM7 1665 aa8.9□□□□□ -0.98
CLCN3-201ENST00000347613 FAM50AQ14320 339 aaKnown RBP8.9□□□□□ -0.98
CLCN3-201ENST00000347613 DAXXQ9UER7 740 aaPredicted RBP8.9□□□□□ -0.98
CLCN3-201ENST00000347613 HIRIP3Q9BW71 556 aaPredicted RBP8.9□□□□□ -0.99
CLCN3-201ENST00000347613 KIF21AQ7Z4S6 1674 aa8.89□□□□□ -0.99
CLCN3-201ENST00000347613 PTPRKQ15262 1439 aa8.89□□□□□ -0.99
CLCN3-201ENST00000347613 CTTNBP2Q8WZ74 1663 aa8.88□□□□□ -0.99
CLCN3-201ENST00000347613 MAP3K1Q13233 1512 aa8.88□□□□□ -0.99
CLCN3-201ENST00000347613 CENPBP07199 599 aaPredicted RBP8.87□□□□□ -0.99
CLCN3-201ENST00000347613 SNAPC4Q5SXM2 1469 aa8.87□□□□□ -0.99
CLCN3-201ENST00000347613 ABCA5Q8WWZ7 1642 aa8.86□□□□□ -0.99
CLCN3-201ENST00000347613 CLSPNQ9HAW4 1339 aa8.86□□□□□ -0.99
CLCN3-201ENST00000347613 SETD5Q9C0A6 1442 aa8.86□□□□□ -0.99
CLCN3-201ENST00000347613 MAGI3Q5TCQ9 1506 aa8.85□□□□□ -0.99
CLCN3-201ENST00000347613 CASKIN1Q8WXD9 1431 aa8.84□□□□□ -0.99
CLCN3-201ENST00000347613 CUL7Q14999 1698 aa8.83□□□□□ -1
CLCN3-201ENST00000347613 AQRO60306 1485 aaKnown RBP eCLIP8.83□□□□□ -1
CLCN3-201ENST00000347613 TARBP1Q13395 1621 aaKnown RBP8.83□□□□□ -1
CLCN3-201ENST00000347613 LAMC3Q9Y6N6 1575 aa8.82□□□□□ -1
CLCN3-201ENST00000347613 GAPVD1Q14C86 1478 aa8.82□□□□□ -1
CLCN3-201ENST00000347613 FYCO1Q9BQS8 1478 aa8.82□□□□□ -1
CLCN3-201ENST00000347613 ARID3CA6NKF2 412 aa8.82□□□□□ -1
CLCN3-201ENST00000347613 FHAD1B1AJZ9 1412 aa8.82□□□□□ -1
CLCN3-201ENST00000347613 SAMD9Q5K651 1589 aa8.82□□□□□ -1
CLCN3-201ENST00000347613 GRIN2BQ13224 1484 aa8.8□□□□□ -1
CLCN3-201ENST00000347613 FGD6Q6ZV73 1430 aa8.79□□□□□ -1
CLCN3-201ENST00000347613 EFCAB5A4FU69 1503 aa8.79□□□□□ -1
CLCN3-201ENST00000347613 KDM6BO15054 1643 aa8.79□□□□□ -1
CLCN3-201ENST00000347613 DENND4BO75064 1496 aaPredicted RBP8.79□□□□□ -1
CLCN3-201ENST00000347613 DDX10Q13206 875 aaKnown RBP8.78□□□□□ -1
CLCN3-201ENST00000347613 ZNF608Q9ULD9 1512 aaPredicted RBP8.77□□□□□ -1.01
CLCN3-201ENST00000347613 NCOA2Q15596 1464 aa8.77□□□□□ -1.01
CLCN3-201ENST00000347613 KDM5BQ9UGL1 1544 aa8.76□□□□□ -1.01
CLCN3-201ENST00000347613 PBRM1Q86U86 1689 aa8.76□□□□□ -1.01
CLCN3-201ENST00000347613 CHIC2Q9UKJ5 165 aa8.75□□□□□ -1.01
CLCN3-201ENST00000347613 CDK13Q14004 1512 aaKnown RBP8.75□□□□□ -1.01
CLCN3-201ENST00000347613 PPP1R15AO75807 674 aaPredicted RBP8.75□□□□□ -1.01
CLCN3-201ENST00000347613 PTPN23Q9H3S7 1636 aa8.75□□□□□ -1.01
CLCN3-201ENST00000347613 NAIPQ13075 1403 aa8.75□□□□□ -1.01
CLCN3-201ENST00000347613 FMN1Q68DA7 1419 aa8.75□□□□□ -1.01
CLCN3-201ENST00000347613 MTUS2Q5JR59 1369 aa8.74□□□□□ -1.01
CLCN3-201ENST00000347613 RRP7BPQ9NSQ0 103 aa8.74□□□□□ -1.01
CLCN3-201ENST00000347613 PDS5BQ9NTI5 1447 aa8.74□□□□□ -1.01
CLCN3-201ENST00000347613 PLPPR3Q6T4P5 718 aa8.74□□□□□ -1.01
CLCN3-201ENST00000347613 CCDC18Q5T9S5 1454 aa8.73□□□□□ -1.01
CLCN3-201ENST00000347613 ARHGEF11O15085 1522 aa8.73□□□□□ -1.01
CLCN3-201ENST00000347613 FOXD1Q16676 465 aa8.73□□□□□ -1.01
CLCN3-201ENST00000347613 UGGT2Q9NYU1 1516 aa8.72□□□□□ -1.01
CLCN3-201ENST00000347613 SUPT16HQ9Y5B9 1047 aaKnown RBP8.72□□□□□ -1.01
CLCN3-201ENST00000347613 MYOM3Q5VTT5 1437 aa8.72□□□□□ -1.01
CLCN3-201ENST00000347613 THOC2Q8NI27 1593 aaKnown RBP8.72□□□□□ -1.01
CLCN3-201ENST00000347613 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.71□□□□□ -1.01
CLCN3-201ENST00000347613 HFM1A2PYH4 1435 aa8.71□□□□□ -1.01
CLCN3-201ENST00000347613 ZNF644Q9H582 1327 aaPredicted RBP8.71□□□□□ -1.01
CLCN3-201ENST00000347613 ADAMTS12P58397 1594 aa8.7□□□□□ -1.02
CLCN3-201ENST00000347613 SUPT6HQ7KZ85 1726 aaKnown RBP8.7□□□□□ -1.02
CLCN3-201ENST00000347613 EPRSP07814 1512 aaKnown RBP8.69□□□□□ -1.02
CLCN3-201ENST00000347613 IQGAP2Q13576 1575 aa8.68□□□□□ -1.02
CLCN3-201ENST00000347613 UACAQ9BZF9 1416 aa8.68□□□□□ -1.02
CLCN3-201ENST00000347613 DISP1Q96F81 1524 aa8.67□□□□□ -1.02
CLCN3-201ENST00000347613 WDR62O43379 1518 aa8.67□□□□□ -1.02
CLCN3-201ENST00000347613 EHBP1L1Q8N3D4 1523 aa8.67□□□□□ -1.02
CLCN3-201ENST00000347613 C11orf95C9JLR9 678 aaPredicted RBP8.66□□□□□ -1.02
CLCN3-201ENST00000347613 PELP1Q8IZL8 1130 aaKnown RBP8.66□□□□□ -1.02
CLCN3-201ENST00000347613 MRC2Q9UBG0 1479 aa8.65□□□□□ -1.02
CLCN3-201ENST00000347613 TRIM52Q96A61 297 aa8.65□□□□□ -1.02
CLCN3-201ENST00000347613 TCOF1Q13428 1488 aaKnown RBP8.65□□□□□ -1.03
CLCN3-201ENST00000347613 CCDC184Q52MB2 194 aa8.64□□□□□ -1.03
CLCN3-201ENST00000347613 NUP153P49790 1475 aaKnown RBP8.64□□□□□ -1.03
CLCN3-201ENST00000347613 BCANQ96GW7 911 aa8.63□□□□□ -1.03
CLCN3-201ENST00000347613 HECW1Q76N89 1606 aa8.63□□□□□ -1.03
CLCN3-201ENST00000347613 GCC2Q8IWJ2 1684 aa8.63□□□□□ -1.03
CLCN3-201ENST00000347613 TONSLQ96HA7 1378 aa8.63□□□□□ -1.03
CLCN3-201ENST00000347613 EIF4G3O43432 1585 aaKnown RBP8.62□□□□□ -1.03
CLCN3-201ENST00000347613 WASHC2AQ641Q2 1341 aa8.62□□□□□ -1.03
CLCN3-201ENST00000347613 KIAA0556O60303 1618 aa8.62□□□□□ -1.03
CLCN3-201ENST00000347613 NBPF8Q3BBV2 869 aa8.62□□□□□ -1.03
CLCN3-201ENST00000347613 MYT1Q01538 1121 aa8.61□□□□□ -1.03
CLCN3-201ENST00000347613 MPHOSPH9Q99550 1183 aa8.61□□□□□ -1.03
CLCN3-201ENST00000347613 PRG4Q92954 1404 aaPredicted RBP8.61□□□□□ -1.03
CLCN3-201ENST00000347613 PLB1Q6P1J6 1458 aa8.61□□□□□ -1.03
CLCN3-201ENST00000347613 CEP170Q5SW79 1584 aa8.61□□□□□ -1.03
CLCN3-201ENST00000347613 ABCC5O15440 1437 aa8.6□□□□□ -1.03
CLCN3-201ENST00000347613 L3MBTL2Q969R5 705 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms