RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 TDRD9Q8NDG6 1382 aaKnown RBP21.97■■□□□ 1.11
VIPAS39-202ENST00000343765 FHAD1B1AJZ9 1412 aa21.96■■□□□ 1.11
VIPAS39-202ENST00000343765 PCF11O94913 1555 aaKnown RBP21.94■■□□□ 1.1
VIPAS39-202ENST00000343765 NEUROD1Q13562 356 aa21.94■■□□□ 1.1
VIPAS39-202ENST00000343765 LRRC9Q6ZRR7 1453 aa21.94■■□□□ 1.1
VIPAS39-202ENST00000343765 ACIN1Q9UKV3 1341 aaKnown RBP21.92■■□□□ 1.1
VIPAS39-202ENST00000343765 PDS5BQ9NTI5 1447 aa21.91■■□□□ 1.1
VIPAS39-202ENST00000343765 MAP3K1Q13233 1512 aa21.91■■□□□ 1.1
VIPAS39-202ENST00000343765 CUL7Q14999 1698 aa21.91■■□□□ 1.1
VIPAS39-202ENST00000343765 PHLDB1Q86UU1 1377 aa21.91■■□□□ 1.1
VIPAS39-202ENST00000343765 CLSPNQ9HAW4 1339 aa21.91■■□□□ 1.1
VIPAS39-202ENST00000343765 FAM50AQ14320 339 aaKnown RBP21.9■■□□□ 1.1
VIPAS39-202ENST00000343765 WDR97A6NE52 1622 aa21.85■■□□□ 1.09
VIPAS39-202ENST00000343765 GAPVD1Q14C86 1478 aa21.85■■□□□ 1.09
VIPAS39-202ENST00000343765 CENPBP07199 599 aaPredicted RBP21.85■■□□□ 1.09
VIPAS39-202ENST00000343765 MIER1Q8N108 512 aa21.85■■□□□ 1.09
VIPAS39-202ENST00000343765 RAB3GAP2Q9H2M9 1393 aa21.84■■□□□ 1.09
VIPAS39-202ENST00000343765 YTHDC1Q96MU7 727 aaKnown RBP21.84■■□□□ 1.09
VIPAS39-202ENST00000343765 EFCAB5A4FU69 1503 aa21.83■■□□□ 1.09
VIPAS39-202ENST00000343765 CTTNBP2Q8WZ74 1663 aa21.83■■□□□ 1.09
VIPAS39-202ENST00000343765 KIF21AQ7Z4S6 1674 aa21.83■■□□□ 1.09
VIPAS39-202ENST00000343765 CFAP43Q8NDM7 1665 aa21.83■■□□□ 1.08
VIPAS39-202ENST00000343765 FYCO1Q9BQS8 1478 aa21.81■■□□□ 1.08
VIPAS39-202ENST00000343765 ABCA5Q8WWZ7 1642 aa21.81■■□□□ 1.08
VIPAS39-202ENST00000343765 CASKIN1Q8WXD9 1431 aa21.8■■□□□ 1.08
VIPAS39-202ENST00000343765 FMN1Q68DA7 1419 aa21.75■■□□□ 1.07
VIPAS39-202ENST00000343765 SETD5Q9C0A6 1442 aa21.74■■□□□ 1.07
VIPAS39-202ENST00000343765 AQRO60306 1485 aaKnown RBP eCLIP21.72■■□□□ 1.072e-6■■■■■ 28.9
VIPAS39-202ENST00000343765 GTF3C3Q9Y5Q9 886 aa21.7■■□□□ 1.06
VIPAS39-202ENST00000343765 SNAPC4Q5SXM2 1469 aa21.69■■□□□ 1.06
VIPAS39-202ENST00000343765 MTUS2Q5JR59 1369 aa21.68■■□□□ 1.06
VIPAS39-202ENST00000343765 TARBP1Q13395 1621 aaKnown RBP21.68■■□□□ 1.06
VIPAS39-202ENST00000343765 MAPKBP1O60336 1514 aa21.67■■□□□ 1.06
VIPAS39-202ENST00000343765 SAMD9Q5K651 1589 aa21.65■■□□□ 1.06
VIPAS39-202ENST00000343765 SIN3AQ96ST3 1273 aa21.61■■□□□ 1.05
VIPAS39-202ENST00000343765 FGD6Q6ZV73 1430 aa21.61■■□□□ 1.05
VIPAS39-202ENST00000343765 MRC2Q9UBG0 1479 aa21.58■■□□□ 1.05
VIPAS39-202ENST00000343765 ARID3CA6NKF2 412 aa21.58■■□□□ 1.05
VIPAS39-202ENST00000343765 GRIN2BQ13224 1484 aa21.58■■□□□ 1.04
VIPAS39-202ENST00000343765 LRRIQ1Q96JM4 1722 aa21.57■■□□□ 1.04
VIPAS39-202ENST00000343765 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
VIPAS39-202ENST00000343765 NCOA2Q15596 1464 aa21.53■■□□□ 1.04
VIPAS39-202ENST00000343765 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.53■■□□□ 1.04
VIPAS39-202ENST00000343765 ADAMTS12P58397 1594 aa21.5■■□□□ 1.03
VIPAS39-202ENST00000343765 ZNF608Q9ULD9 1512 aaPredicted RBP21.5■■□□□ 1.03
VIPAS39-202ENST00000343765 PTPRKQ15262 1439 aa21.49■■□□□ 1.03
VIPAS39-202ENST00000343765 IQGAP2Q13576 1575 aa21.48■■□□□ 1.03
VIPAS39-202ENST00000343765 MYOM3Q5VTT5 1437 aa21.48■■□□□ 1.03
VIPAS39-202ENST00000343765 THOC2Q8NI27 1593 aaKnown RBP21.46■■□□□ 1.03
VIPAS39-202ENST00000343765 MAGI3Q5TCQ9 1506 aa21.46■■□□□ 1.03
VIPAS39-202ENST00000343765 EHBP1L1Q8N3D4 1523 aa21.46■■□□□ 1.03
VIPAS39-202ENST00000343765 SUPT6HQ7KZ85 1726 aaKnown RBP21.45■■□□□ 1.02
VIPAS39-202ENST00000343765 CCDC18Q5T9S5 1454 aa21.44■■□□□ 1.02
VIPAS39-202ENST00000343765 IFT140Q96RY7 1462 aa21.41■■□□□ 1.02
VIPAS39-202ENST00000343765 CDK13Q14004 1512 aaKnown RBP21.4■■□□□ 1.02
VIPAS39-202ENST00000343765 HFM1A2PYH4 1435 aa21.4■■□□□ 1.02
VIPAS39-202ENST00000343765 CHIC2Q9UKJ5 165 aa21.4■■□□□ 1.02
VIPAS39-202ENST00000343765 HECW1Q76N89 1606 aa21.4■■□□□ 1.02
VIPAS39-202ENST00000343765 UGGT2Q9NYU1 1516 aa21.39■■□□□ 1.02
VIPAS39-202ENST00000343765 EPRSP07814 1512 aaKnown RBP21.38■■□□□ 1.01
VIPAS39-202ENST00000343765 PTPN23Q9H3S7 1636 aa21.37■■□□□ 1.01
VIPAS39-202ENST00000343765 WDR62O43379 1518 aa21.37■■□□□ 1.01
VIPAS39-202ENST00000343765 RRP7BPQ9NSQ0 103 aa21.37■■□□□ 1.01
VIPAS39-202ENST00000343765 NAIPQ13075 1403 aa21.36■■□□□ 1.01
VIPAS39-202ENST00000343765 HIRIP3Q9BW71 556 aaPredicted RBP21.36■■□□□ 1.01
VIPAS39-202ENST00000343765 ERCC6Q03468 1493 aa21.36■■□□□ 1.01
VIPAS39-202ENST00000343765 ARHGEF11O15085 1522 aa21.33■■□□□ 1.01
VIPAS39-202ENST00000343765 UACAQ9BZF9 1416 aa21.33■■□□□ 1
VIPAS39-202ENST00000343765 PPP1R15AO75807 674 aaPredicted RBP21.32■■□□□ 1
VIPAS39-202ENST00000343765 TONSLQ96HA7 1378 aa21.31■■□□□ 1
VIPAS39-202ENST00000343765 TIMELESSQ9UNS1 1208 aa21.31■■□□□ 1
VIPAS39-202ENST00000343765 DDX10Q13206 875 aaKnown RBP21.31■■□□□ 1
VIPAS39-202ENST00000343765 EIF4G3O43432 1585 aaKnown RBP21.29■■□□□ 1
VIPAS39-202ENST00000343765 FBLN2P98095 1184 aa21.29■■□□□ 1
VIPAS39-202ENST00000343765 KIAA0586Q9BVV6 1533 aa21.28■■□□□ 1
VIPAS39-202ENST00000343765 GRIN2AQ12879 1464 aa21.27■■□□□ 1
VIPAS39-202ENST00000343765 DISP1Q96F81 1524 aa21.26■□□□□ 0.99
VIPAS39-202ENST00000343765 TRIM52Q96A61 297 aa21.26■□□□□ 0.99
VIPAS39-202ENST00000343765 KCNH8Q96L42 1107 aa21.25■□□□□ 0.99
VIPAS39-202ENST00000343765 CHMP7Q8WUX9 453 aaPredicted RBP21.25■□□□□ 0.99
VIPAS39-202ENST00000343765 KIAA0556O60303 1618 aa21.25■□□□□ 0.99
VIPAS39-202ENST00000343765 TCOF1Q13428 1488 aaKnown RBP21.24■□□□□ 0.99
VIPAS39-202ENST00000343765 NUP153P49790 1475 aaKnown RBP21.2■□□□□ 0.98
VIPAS39-202ENST00000343765 PELP1Q8IZL8 1130 aaKnown RBP21.19■□□□□ 0.98
VIPAS39-202ENST00000343765 MIA2Q96PC5 1412 aa21.19■□□□□ 0.98
VIPAS39-202ENST00000343765 KDM6BO15054 1643 aa21.18■□□□□ 0.98
VIPAS39-202ENST00000343765 ZNF644Q9H582 1327 aaPredicted RBP21.17■□□□□ 0.98
VIPAS39-202ENST00000343765 RAPGEF6Q8TEU7 1601 aa21.15■□□□□ 0.98
VIPAS39-202ENST00000343765 MAGI1Q96QZ7 1491 aaPredicted RBP21.14■□□□□ 0.97
VIPAS39-202ENST00000343765 FOXD1Q16676 465 aa21.14■□□□□ 0.97
VIPAS39-202ENST00000343765 GCC2Q8IWJ2 1684 aa21.13■□□□□ 0.97
VIPAS39-202ENST00000343765 CEP170Q5SW79 1584 aa21.13■□□□□ 0.97
VIPAS39-202ENST00000343765 CDK11AQ9UQ88 783 aaPredicted RBP21.13■□□□□ 0.97
VIPAS39-202ENST00000343765 SYNJ2O15056 1496 aa21.12■□□□□ 0.97
VIPAS39-202ENST00000343765 PLB1Q6P1J6 1458 aa21.11■□□□□ 0.97
VIPAS39-202ENST00000343765 PRG4Q92954 1404 aaPredicted RBP21.11■□□□□ 0.97
VIPAS39-202ENST00000343765 DENND4BO75064 1496 aaPredicted RBP21.1■□□□□ 0.97
VIPAS39-202ENST00000343765 MPHOSPH9Q99550 1183 aa21.1■□□□□ 0.97
VIPAS39-202ENST00000343765 AKNAQ7Z591 1439 aa21.1■□□□□ 0.97
VIPAS39-202ENST00000343765 DAPK1P53355 1430 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms