RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
COL18A1-201ENST00000342220 FAM50AQ14320 339 aaKnown RBP19.62■□□□□ 0.73
COL18A1-201ENST00000342220 ZNF608Q9ULD9 1512 aaPredicted RBP19.61■□□□□ 0.73
COL18A1-201ENST00000342220 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
COL18A1-201ENST00000342220 FHOD3Q2V2M9 1422 aa19.59■□□□□ 0.73
COL18A1-201ENST00000342220 VPS8Q8N3P4 1428 aa19.58■□□□□ 0.72
COL18A1-201ENST00000342220 ABCA10Q8WWZ4 1543 aa19.55■□□□□ 0.72
COL18A1-201ENST00000342220 ARAP1Q96P48 1450 aa19.54■□□□□ 0.72
COL18A1-201ENST00000342220 ABCA5Q8WWZ7 1642 aa19.51■□□□□ 0.71
COL18A1-201ENST00000342220 TARBP1Q13395 1621 aaKnown RBP19.49■□□□□ 0.71
COL18A1-201ENST00000342220 ARHGAP35Q9NRY4 1499 aa19.47■□□□□ 0.71
COL18A1-201ENST00000342220 WDR62O43379 1518 aa19.46■□□□□ 0.71
COL18A1-201ENST00000342220 CUL7Q14999 1698 aa19.45■□□□□ 0.7
COL18A1-201ENST00000342220 THOC2Q8NI27 1593 aaKnown RBP19.41■□□□□ 0.7
COL18A1-201ENST00000342220 SNAPC4Q5SXM2 1469 aa19.37■□□□□ 0.69
COL18A1-201ENST00000342220 GRIN2BQ13224 1484 aa19.35■□□□□ 0.69
COL18A1-201ENST00000342220 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
COL18A1-201ENST00000342220 MTUS2Q5JR59 1369 aa19.34■□□□□ 0.69
COL18A1-201ENST00000342220 PBRM1Q86U86 1689 aa19.33■□□□□ 0.68
COL18A1-201ENST00000342220 JPH4Q96JJ6 628 aa19.33■□□□□ 0.68
COL18A1-201ENST00000342220 ZNF777Q9ULD5 760 aaPredicted RBP19.33■□□□□ 0.68
COL18A1-201ENST00000342220 CHIC2Q9UKJ5 165 aa19.32■□□□□ 0.68
COL18A1-201ENST00000342220 FHAD1B1AJZ9 1412 aa19.31■□□□□ 0.68
COL18A1-201ENST00000342220 CTTNBP2Q8WZ74 1663 aa19.29■□□□□ 0.68
COL18A1-201ENST00000342220 ACIN1Q9UKV3 1341 aaKnown RBP19.23■□□□□ 0.67
COL18A1-201ENST00000342220 GTF3C3Q9Y5Q9 886 aa19.21■□□□□ 0.67
COL18A1-201ENST00000342220 DIEXFQ68CQ4 756 aaKnown RBP19.21■□□□□ 0.67
COL18A1-201ENST00000342220 NEUROD1Q13562 356 aa19.2■□□□□ 0.66
COL18A1-201ENST00000342220 KCNH8Q96L42 1107 aa19.2■□□□□ 0.66
COL18A1-201ENST00000342220 ADAMTS12P58397 1594 aa19.17■□□□□ 0.66
COL18A1-201ENST00000342220 FMN1Q68DA7 1419 aa19.16■□□□□ 0.66
COL18A1-201ENST00000342220 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
COL18A1-201ENST00000342220 RRP7BPQ9NSQ0 103 aa19.16■□□□□ 0.66
COL18A1-201ENST00000342220 PHLDB1Q86UU1 1377 aa19.15■□□□□ 0.66
COL18A1-201ENST00000342220 EIF4G3O43432 1585 aaKnown RBP19.14■□□□□ 0.66
COL18A1-201ENST00000342220 GRIN2AQ12879 1464 aa19.12■□□□□ 0.65
COL18A1-201ENST00000342220 TRIM52Q96A61 297 aa19.11■□□□□ 0.65
COL18A1-201ENST00000342220 SAMD9Q5K651 1589 aa19.1■□□□□ 0.65
COL18A1-201ENST00000342220 EFCAB5A4FU69 1503 aa19.1■□□□□ 0.65
COL18A1-201ENST00000342220 CDK11AQ9UQ88 783 aaPredicted RBP19.1■□□□□ 0.65
COL18A1-201ENST00000342220 PCF11O94913 1555 aaKnown RBP19.08■□□□□ 0.65
COL18A1-201ENST00000342220 LRRC9Q6ZRR7 1453 aa19.05■□□□□ 0.64
COL18A1-201ENST00000342220 SYNJ2O15056 1496 aa19.05■□□□□ 0.64
COL18A1-201ENST00000342220 PLEKHD1A6NEE1 506 aa19.05■□□□□ 0.64
COL18A1-201ENST00000342220 MYT1LQ9UL68 1186 aa19.05■□□□□ 0.64
COL18A1-201ENST00000342220 ZNF644Q9H582 1327 aaPredicted RBP19.04■□□□□ 0.64
COL18A1-201ENST00000342220 IQGAP2Q13576 1575 aa19.04■□□□□ 0.64
COL18A1-201ENST00000342220 MAP3K1Q13233 1512 aa19.03■□□□□ 0.64
COL18A1-201ENST00000342220 CASKIN1Q8WXD9 1431 aa19.03■□□□□ 0.64
COL18A1-201ENST00000342220 BCL11AQ9H165 835 aa19.02■□□□□ 0.64
COL18A1-201ENST00000342220 CDK13Q14004 1512 aaKnown RBP19.02■□□□□ 0.64
COL18A1-201ENST00000342220 CARMIL2Q6F5E8 1435 aa19.02■□□□□ 0.64
COL18A1-201ENST00000342220 ZNF316A6NFI3 1004 aaPredicted RBP19.02■□□□□ 0.63
COL18A1-201ENST00000342220 KIAA0586Q9BVV6 1533 aa19.02■□□□□ 0.63
COL18A1-201ENST00000342220 PRG4Q92954 1404 aaPredicted RBP19.01■□□□□ 0.63
COL18A1-201ENST00000342220 PLB1Q6P1J6 1458 aa19■□□□□ 0.63
COL18A1-201ENST00000342220 CFDP1Q9UEE9 299 aaPredicted RBP18.99■□□□□ 0.63
COL18A1-201ENST00000342220 MAGI1Q96QZ7 1491 aaPredicted RBP18.99■□□□□ 0.63
COL18A1-201ENST00000342220 CFAP43Q8NDM7 1665 aa18.99■□□□□ 0.63
COL18A1-201ENST00000342220 TIAM1Q13009 1591 aa18.97■□□□□ 0.63
COL18A1-201ENST00000342220 PTPRGP23470 1445 aa18.97■□□□□ 0.63
COL18A1-201ENST00000342220 CENPBP07199 599 aaPredicted RBP18.97■□□□□ 0.63
COL18A1-201ENST00000342220 SIN3AQ96ST3 1273 aa18.97■□□□□ 0.63
COL18A1-201ENST00000342220 FYCO1Q9BQS8 1478 aa18.94■□□□□ 0.62
COL18A1-201ENST00000342220 RAB3GAP2Q9H2M9 1393 aa18.92■□□□□ 0.62
COL18A1-201ENST00000342220 FOXD1Q16676 465 aa18.9■□□□□ 0.62
COL18A1-201ENST00000342220 UGGT2Q9NYU1 1516 aa18.89■□□□□ 0.61
COL18A1-201ENST00000342220 CEP170Q5SW79 1584 aa18.89■□□□□ 0.61
COL18A1-201ENST00000342220 NCOA2Q15596 1464 aa18.88■□□□□ 0.61
COL18A1-201ENST00000342220 LRRIQ1Q96JM4 1722 aa18.88■□□□□ 0.61
COL18A1-201ENST00000342220 OSCARQ8IYS5 282 aa18.88■□□□□ 0.61
COL18A1-201ENST00000342220 DISP1Q96F81 1524 aa18.87■□□□□ 0.61
COL18A1-201ENST00000342220 HIRIP3Q9BW71 556 aaPredicted RBP18.87■□□□□ 0.61
COL18A1-201ENST00000342220 EPRSP07814 1512 aaKnown RBP18.86■□□□□ 0.61
COL18A1-201ENST00000342220 HNRNPMP52272 730 aaKnown RBP eCLIP18.85■□□□□ 0.61
COL18A1-201ENST00000342220 FGD6Q6ZV73 1430 aa18.83■□□□□ 0.61
COL18A1-201ENST00000342220 RRBP1Q9P2E9 1410 aaKnown RBP18.83■□□□□ 0.61
COL18A1-201ENST00000342220 CYB5RLQ6IPT4 315 aa18.82■□□□□ 0.6
COL18A1-201ENST00000342220 YTHDC1Q96MU7 727 aaKnown RBP18.82■□□□□ 0.6
COL18A1-201ENST00000342220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.82■□□□□ 0.61e-8■□□□□ 10.1
COL18A1-201ENST00000342220 NPM1P06748 294 aaKnown RBP eCLIP18.8■□□□□ 0.6
COL18A1-201ENST00000342220 MIER1Q8N108 512 aa18.8■□□□□ 0.6
COL18A1-201ENST00000342220 SETD5Q9C0A6 1442 aa18.79■□□□□ 0.6
COL18A1-201ENST00000342220 NUP160Q12769 1436 aa18.79■□□□□ 0.6
COL18A1-201ENST00000342220 DHX57Q6P158 1386 aaKnown RBP18.79■□□□□ 0.6
COL18A1-201ENST00000342220 PRKCSHP14314 528 aaPredicted RBP18.78■□□□□ 0.6
COL18A1-201ENST00000342220 MYOM3Q5VTT5 1437 aa18.77■□□□□ 0.6
COL18A1-201ENST00000342220 ZNF326Q5BKZ1 582 aaKnown RBP18.77■□□□□ 0.6
COL18A1-201ENST00000342220 NUP153P49790 1475 aaKnown RBP18.77■□□□□ 0.6
COL18A1-201ENST00000342220 TSPY4P0CV99 314 aa18.76■□□□□ 0.59
COL18A1-201ENST00000342220 TSPY10P0CW01 314 aa18.76■□□□□ 0.59
COL18A1-201ENST00000342220 KIAA0556O60303 1618 aa18.76■□□□□ 0.59
COL18A1-201ENST00000342220 CCDC18Q5T9S5 1454 aa18.76■□□□□ 0.59
COL18A1-201ENST00000342220 MAGI3Q5TCQ9 1506 aa18.75■□□□□ 0.59
COL18A1-201ENST00000342220 PTPRKQ15262 1439 aa18.72■□□□□ 0.59
COL18A1-201ENST00000342220 CNGB1Q14028 1251 aaPredicted RBP18.72■□□□□ 0.59
COL18A1-201ENST00000342220 ERCC6L2Q5T890 1561 aa18.71■□□□□ 0.59
COL18A1-201ENST00000342220 SLC4A1APQ9BWU0 796 aaKnown RBP18.71■□□□□ 0.59
COL18A1-201ENST00000342220 HECW1Q76N89 1606 aa18.71■□□□□ 0.59
COL18A1-201ENST00000342220 CHD1O14646 1710 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms