RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZNF316A6NFI3 1004 aaPredicted RBP15.36■□□□□ 0.05
LIMA1-201ENST00000341247 PCF11O94913 1555 aaKnown RBP15.36■□□□□ 0.05
LIMA1-201ENST00000341247 GAPVD1Q14C86 1478 aa15.35■□□□□ 0.05
LIMA1-201ENST00000341247 AQRO60306 1485 aaKnown RBP eCLIP15.34■□□□□ 0.05
LIMA1-201ENST00000341247 CUL7Q14999 1698 aa15.33■□□□□ 0.04
LIMA1-201ENST00000341247 TIAM1Q13009 1591 aa15.33■□□□□ 0.04
LIMA1-201ENST00000341247 CTTNBP2Q8WZ74 1663 aa15.31■□□□□ 0.04
LIMA1-201ENST00000341247 RRBP1Q9P2E9 1410 aaKnown RBP15.31■□□□□ 0.04
LIMA1-201ENST00000341247 FAM50AQ14320 339 aaKnown RBP15.3■□□□□ 0.04
LIMA1-201ENST00000341247 ZNF608Q9ULD9 1512 aaPredicted RBP15.3■□□□□ 0.04
LIMA1-201ENST00000341247 PHLDB1Q86UU1 1377 aa15.29■□□□□ 0.04
LIMA1-201ENST00000341247 CCNB3Q8WWL7 1395 aa15.29■□□□□ 0.04
LIMA1-201ENST00000341247 LRRIQ1Q96JM4 1722 aa15.28■□□□□ 0.04
LIMA1-201ENST00000341247 LRRC9Q6ZRR7 1453 aa15.27■□□□□ 0.04
LIMA1-201ENST00000341247 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
LIMA1-201ENST00000341247 DHX57Q6P158 1386 aaKnown RBP15.25■□□□□ 0.03
LIMA1-201ENST00000341247 YTHDC1Q96MU7 727 aaKnown RBP15.25■□□□□ 0.03
LIMA1-201ENST00000341247 MRC2Q9UBG0 1479 aa15.24■□□□□ 0.03
LIMA1-201ENST00000341247 PBRM1Q86U86 1689 aa15.24■□□□□ 0.03
LIMA1-201ENST00000341247 SNAPC4Q5SXM2 1469 aa15.23■□□□□ 0.03
LIMA1-201ENST00000341247 CFAP43Q8NDM7 1665 aa15.22■□□□□ 0.03
LIMA1-201ENST00000341247 NEUROD1Q13562 356 aa15.22■□□□□ 0.03
LIMA1-201ENST00000341247 SAMD9Q5K651 1589 aa15.21■□□□□ 0.03
LIMA1-201ENST00000341247 MAP3K1Q13233 1512 aa15.19■□□□□ 0.02
LIMA1-201ENST00000341247 FHAD1B1AJZ9 1412 aa15.19■□□□□ 0.02
LIMA1-201ENST00000341247 EFCAB5A4FU69 1503 aa15.18■□□□□ 0.02
LIMA1-201ENST00000341247 MIER1Q8N108 512 aa15.18■□□□□ 0.02
LIMA1-201ENST00000341247 CASKIN1Q8WXD9 1431 aa15.17■□□□□ 0.02
LIMA1-201ENST00000341247 ARID3CA6NKF2 412 aa15.17■□□□□ 0.02
LIMA1-201ENST00000341247 WDR62O43379 1518 aa15.17■□□□□ 0.02
LIMA1-201ENST00000341247 ADAMTS12P58397 1594 aa15.16■□□□□ 0.02
LIMA1-201ENST00000341247 FYCO1Q9BQS8 1478 aa15.16■□□□□ 0.02
LIMA1-201ENST00000341247 ACIN1Q9UKV3 1341 aaKnown RBP15.15■□□□□ 0.02
LIMA1-201ENST00000341247 RAB3GAP2Q9H2M9 1393 aa15.15■□□□□ 0.02
LIMA1-201ENST00000341247 MAGI3Q5TCQ9 1506 aa15.14■□□□□ 0.01
LIMA1-201ENST00000341247 GRIN2BQ13224 1484 aa15.12■□□□□ 0.01
LIMA1-201ENST00000341247 THOC2Q8NI27 1593 aaKnown RBP15.12■□□□□ 0.01
LIMA1-201ENST00000341247 CENPBP07199 599 aaPredicted RBP15.11■□□□□ 0.01
LIMA1-201ENST00000341247 EIF4G3O43432 1585 aaKnown RBP15.1■□□□□ 0.01
LIMA1-201ENST00000341247 CLSPNQ9HAW4 1339 aa15.08■□□□□ 0.01
LIMA1-201ENST00000341247 FMN1Q68DA7 1419 aa15.08■□□□□ 0.01
LIMA1-201ENST00000341247 MTUS2Q5JR59 1369 aa15.08■□□□□ 0
LIMA1-201ENST00000341247 SIN3AQ96ST3 1273 aa15.08■□□□□ 0
LIMA1-201ENST00000341247 IFT140Q96RY7 1462 aa15.08■□□□□ 0
LIMA1-201ENST00000341247 ERCC6Q03468 1493 aa15.08■□□□□ 0
LIMA1-201ENST00000341247 PTPRKQ15262 1439 aa15.08■□□□□ 0
LIMA1-201ENST00000341247 MAPKBP1O60336 1514 aa15.07■□□□□ 0
LIMA1-201ENST00000341247 IQGAP2Q13576 1575 aa15.07■□□□□ 0
LIMA1-201ENST00000341247 SETD5Q9C0A6 1442 aa15.06■□□□□ 0
LIMA1-201ENST00000341247 GTF3C3Q9Y5Q9 886 aa15.05■□□□□ 0
LIMA1-201ENST00000341247 CDK13Q14004 1512 aaKnown RBP15.04■□□□□ -0
LIMA1-201ENST00000341247 DISP1Q96F81 1524 aa15.02□□□□□ -0.01
LIMA1-201ENST00000341247 FGD6Q6ZV73 1430 aa15.01□□□□□ -0.01
LIMA1-201ENST00000341247 NCOA2Q15596 1464 aa15.01□□□□□ -0.01
LIMA1-201ENST00000341247 GRIN2AQ12879 1464 aa14.99□□□□□ -0.01
LIMA1-201ENST00000341247 CEP170Q5SW79 1584 aa14.99□□□□□ -0.01
LIMA1-201ENST00000341247 CHIC2Q9UKJ5 165 aa14.98□□□□□ -0.01
LIMA1-201ENST00000341247 FBLN2P98095 1184 aa14.98□□□□□ -0.01
LIMA1-201ENST00000341247 UGGT2Q9NYU1 1516 aa14.97□□□□□ -0.01
LIMA1-201ENST00000341247 HIRIP3Q9BW71 556 aaPredicted RBP14.96□□□□□ -0.01
LIMA1-201ENST00000341247 EPRSP07814 1512 aaKnown RBP14.96□□□□□ -0.01
LIMA1-201ENST00000341247 ARHGEF11O15085 1522 aa14.96□□□□□ -0.01
LIMA1-201ENST00000341247 KIAA0556O60303 1618 aa14.95□□□□□ -0.02
LIMA1-201ENST00000341247 KIAA0586Q9BVV6 1533 aa14.94□□□□□ -0.02
LIMA1-201ENST00000341247 RRP7BPQ9NSQ0 103 aa14.94□□□□□ -0.02
LIMA1-201ENST00000341247 MYOM3Q5VTT5 1437 aa14.92□□□□□ -0.02
LIMA1-201ENST00000341247 SUPT6HQ7KZ85 1726 aaKnown RBP14.92□□□□□ -0.02
LIMA1-201ENST00000341247 EHBP1L1Q8N3D4 1523 aa14.91□□□□□ -0.02
LIMA1-201ENST00000341247 NUP153P49790 1475 aaKnown RBP14.91□□□□□ -0.02
LIMA1-201ENST00000341247 HECW1Q76N89 1606 aa14.9□□□□□ -0.02
LIMA1-201ENST00000341247 CHMP7Q8WUX9 453 aaPredicted RBP14.89□□□□□ -0.03
LIMA1-201ENST00000341247 PTPN23Q9H3S7 1636 aa14.89□□□□□ -0.03
LIMA1-201ENST00000341247 PLB1Q6P1J6 1458 aa14.89□□□□□ -0.03
LIMA1-201ENST00000341247 KDM6BO15054 1643 aa14.89□□□□□ -0.03
LIMA1-201ENST00000341247 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.88□□□□□ -0.03
LIMA1-201ENST00000341247 SYNJ2O15056 1496 aa14.88□□□□□ -0.03
LIMA1-201ENST00000341247 MAGI1Q96QZ7 1491 aaPredicted RBP14.88□□□□□ -0.03
LIMA1-201ENST00000341247 ZNF644Q9H582 1327 aaPredicted RBP14.87□□□□□ -0.03
LIMA1-201ENST00000341247 NAIPQ13075 1403 aa14.86□□□□□ -0.03
LIMA1-201ENST00000341247 TRIM52Q96A61 297 aa14.86□□□□□ -0.03
LIMA1-201ENST00000341247 CCDC18Q5T9S5 1454 aa14.86□□□□□ -0.03
LIMA1-201ENST00000341247 DDX10Q13206 875 aaKnown RBP14.85□□□□□ -0.03
LIMA1-201ENST00000341247 DENND4BO75064 1496 aaPredicted RBP14.84□□□□□ -0.03
LIMA1-201ENST00000341247 HFM1A2PYH4 1435 aa14.83□□□□□ -0.03
LIMA1-201ENST00000341247 NUP160Q12769 1436 aa14.83□□□□□ -0.04
LIMA1-201ENST00000341247 RAPGEF6Q8TEU7 1601 aa14.83□□□□□ -0.04
LIMA1-201ENST00000341247 PRG4Q92954 1404 aaPredicted RBP14.83□□□□□ -0.04
LIMA1-201ENST00000341247 KCNH8Q96L42 1107 aa14.82□□□□□ -0.04
LIMA1-201ENST00000341247 JPH4Q96JJ6 628 aa14.82□□□□□ -0.04
LIMA1-201ENST00000341247 TONSLQ96HA7 1378 aa14.8□□□□□ -0.04
LIMA1-201ENST00000341247 TCOF1Q13428 1488 aaKnown RBP14.8□□□□□ -0.04
LIMA1-201ENST00000341247 PPP1R15AO75807 674 aaPredicted RBP14.8□□□□□ -0.04
LIMA1-201ENST00000341247 FOXD1Q16676 465 aa14.79□□□□□ -0.04
LIMA1-201ENST00000341247 KIF14Q15058 1648 aa14.78□□□□□ -0.04
LIMA1-201ENST00000341247 ZNF777Q9ULD5 760 aaPredicted RBP14.77□□□□□ -0.05
LIMA1-201ENST00000341247 UACAQ9BZF9 1416 aa14.75□□□□□ -0.05
LIMA1-201ENST00000341247 KDM5BQ9UGL1 1544 aa14.73□□□□□ -0.05
LIMA1-201ENST00000341247 CHD1O14646 1710 aa14.72□□□□□ -0.05
LIMA1-201ENST00000341247 ERCC6L2Q5T890 1561 aa14.72□□□□□ -0.05
LIMA1-201ENST00000341247 ABCC5O15440 1437 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms