RNA–Protein interactions for RNA: ENST00000340019.4

TMC1-202, Transcript of transmembrane channel like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TMC1, Length 3,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMC1-202ENST00000340019 CHD1O14646 1710 aa12.56□□□□□ -0.4
TMC1-202ENST00000340019 CLIP1P30622 1438 aa12.55□□□□□ -0.4
TMC1-202ENST00000340019 CEP170Q5SW79 1584 aa12.55□□□□□ -0.4
TMC1-202ENST00000340019 NUP160Q12769 1436 aa12.54□□□□□ -0.4
TMC1-202ENST00000340019 FBLN2P98095 1184 aa12.52□□□□□ -0.4
TMC1-202ENST00000340019 KIAA0586Q9BVV6 1533 aa12.52□□□□□ -0.41
TMC1-202ENST00000340019 IQGAP2Q13576 1575 aa12.52□□□□□ -0.41
TMC1-202ENST00000340019 ARHGAP35Q9NRY4 1499 aa12.51□□□□□ -0.41
TMC1-202ENST00000340019 RANGAP1P46060 587 aaPredicted RBP12.48□□□□□ -0.41
TMC1-202ENST00000340019 EFCAB5A4FU69 1503 aa12.48□□□□□ -0.41
TMC1-202ENST00000340019 SAMD9Q5K651 1589 aa12.48□□□□□ -0.41
TMC1-202ENST00000340019 ARAP1Q96P48 1450 aa12.47□□□□□ -0.41
TMC1-202ENST00000340019 UGGT2Q9NYU1 1516 aa12.47□□□□□ -0.41
TMC1-202ENST00000340019 VPS8Q8N3P4 1428 aa12.42□□□□□ -0.42
TMC1-202ENST00000340019 CLASP1Q7Z460 1538 aa12.42□□□□□ -0.42
TMC1-202ENST00000340019 DISP1Q96F81 1524 aa12.41□□□□□ -0.42
TMC1-202ENST00000340019 SHROOM2Q13796 1616 aa12.41□□□□□ -0.42
TMC1-202ENST00000340019 KIAA0556O60303 1618 aa12.4□□□□□ -0.42
TMC1-202ENST00000340019 FHOD3Q2V2M9 1422 aa12.4□□□□□ -0.42
TMC1-202ENST00000340019 JPH4Q96JJ6 628 aa12.4□□□□□ -0.42
TMC1-202ENST00000340019 P3H3Q8IVL6 736 aa12.38□□□□□ -0.43
TMC1-202ENST00000340019 FMN1Q68DA7 1419 aa12.35□□□□□ -0.43
TMC1-202ENST00000340019 CARMIL2Q6F5E8 1435 aa12.34□□□□□ -0.43
TMC1-202ENST00000340019 PRG4Q92954 1404 aaPredicted RBP12.34□□□□□ -0.43
TMC1-202ENST00000340019 OSCARQ8IYS5 282 aa12.34□□□□□ -0.43
TMC1-202ENST00000340019 PCF11O94913 1555 aaKnown RBP12.33□□□□□ -0.44
TMC1-202ENST00000340019 CASKIN1Q8WXD9 1431 aa12.31□□□□□ -0.44
TMC1-202ENST00000340019 FYCO1Q9BQS8 1478 aa12.31□□□□□ -0.44
TMC1-202ENST00000340019 ERCC6L2Q5T890 1561 aa12.31□□□□□ -0.44
TMC1-202ENST00000340019 LRRIQ1Q96JM4 1722 aa12.27□□□□□ -0.45
TMC1-202ENST00000340019 MAP3K1Q13233 1512 aa12.27□□□□□ -0.45
TMC1-202ENST00000340019 RAPGEF6Q8TEU7 1601 aa12.25□□□□□ -0.45
TMC1-202ENST00000340019 CFAP43Q8NDM7 1665 aa12.25□□□□□ -0.45
TMC1-202ENST00000340019 HECW1Q76N89 1606 aa12.25□□□□□ -0.45
TMC1-202ENST00000340019 TIAM1Q13009 1591 aa12.25□□□□□ -0.45
TMC1-202ENST00000340019 ABCA8O94911 1581 aa12.24□□□□□ -0.45
TMC1-202ENST00000340019 PTPRGP23470 1445 aa12.24□□□□□ -0.45
TMC1-202ENST00000340019 PLB1Q6P1J6 1458 aa12.24□□□□□ -0.45
TMC1-202ENST00000340019 APLP2Q06481 763 aa12.22□□□□□ -0.45
TMC1-202ENST00000340019 NUP153P49790 1475 aaKnown RBP12.22□□□□□ -0.45
TMC1-202ENST00000340019 TTBK1Q5TCY1 1321 aaPredicted RBP12.22□□□□□ -0.45
TMC1-202ENST00000340019 CCDC18Q5T9S5 1454 aa12.21□□□□□ -0.46
TMC1-202ENST00000340019 EPRSP07814 1512 aaKnown RBP12.21□□□□□ -0.46
TMC1-202ENST00000340019 PPARGC1BQ86YN6 1023 aaKnown RBP12.2□□□□□ -0.46
TMC1-202ENST00000340019 ATP1B4Q9UN42 357 aaPredicted RBP12.2□□□□□ -0.46
TMC1-202ENST00000340019 KANK4Q5T7N3 995 aaPredicted RBP12.19□□□□□ -0.46
TMC1-202ENST00000340019 LRRC9Q6ZRR7 1453 aa12.19□□□□□ -0.46
TMC1-202ENST00000340019 UACAQ9BZF9 1416 aa12.18□□□□□ -0.46
TMC1-202ENST00000340019 CDK13Q14004 1512 aaKnown RBP12.17□□□□□ -0.46
TMC1-202ENST00000340019 ARHGEF11O15085 1522 aa12.16□□□□□ -0.46
TMC1-202ENST00000340019 ABCC2Q92887 1545 aa12.16□□□□□ -0.46
TMC1-202ENST00000340019 UHRF1BP1LA0JNW5 1464 aa12.15□□□□□ -0.46
TMC1-202ENST00000340019 MAGI3Q5TCQ9 1506 aa12.15□□□□□ -0.46
TMC1-202ENST00000340019 ATP10BO94823 1461 aa12.14□□□□□ -0.47
TMC1-202ENST00000340019 EHBP1L1Q8N3D4 1523 aa12.13□□□□□ -0.47
TMC1-202ENST00000340019 RIMBP3CA6NJZ7 1639 aa12.12□□□□□ -0.47
TMC1-202ENST00000340019 RIMBP3BA6NNM3 1639 aa12.12□□□□□ -0.47
TMC1-202ENST00000340019 RIMBP3Q9UFD9 1639 aa12.12□□□□□ -0.47
TMC1-202ENST00000340019 ADCY10Q96PN6 1610 aa12.12□□□□□ -0.47
TMC1-202ENST00000340019 ARID3CA6NKF2 412 aa12.12□□□□□ -0.47
TMC1-202ENST00000340019 MTUS2Q5JR59 1369 aa12.1□□□□□ -0.47
TMC1-202ENST00000340019 KDM5BQ9UGL1 1544 aa12.1□□□□□ -0.47
TMC1-202ENST00000340019 TRIM26Q12899 539 aaPredicted RBP12.1□□□□□ -0.47
TMC1-202ENST00000340019 SUPT6HQ7KZ85 1726 aaKnown RBP12.09□□□□□ -0.47
TMC1-202ENST00000340019 ZCCHC11Q5TAX3 1644 aaKnown RBP12.09□□□□□ -0.47
TMC1-202ENST00000340019 CDK11AQ9UQ88 783 aaPredicted RBP12.07□□□□□ -0.48
TMC1-202ENST00000340019 TROQ12816 1431 aaPredicted RBP12.07□□□□□ -0.48
TMC1-202ENST00000340019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.07□□□□□ -0.48
TMC1-202ENST00000340019 HNRNPUL2Q1KMD3 747 aaKnown RBP12.07□□□□□ -0.48
TMC1-202ENST00000340019 NCOA2Q15596 1464 aa12.06□□□□□ -0.48
TMC1-202ENST00000340019 PHLDB1Q86UU1 1377 aa12.05□□□□□ -0.48
TMC1-202ENST00000340019 RRBP1Q9P2E9 1410 aaKnown RBP12.04□□□□□ -0.48
TMC1-202ENST00000340019 KIF14Q15058 1648 aa12.03□□□□□ -0.48
TMC1-202ENST00000340019 PLEKHD1A6NEE1 506 aa12.03□□□□□ -0.48
TMC1-202ENST00000340019 PCGF6Q9BYE7 350 aa12.02□□□□□ -0.49
TMC1-202ENST00000340019 CYB5RLQ6IPT4 315 aa12□□□□□ -0.49
TMC1-202ENST00000340019 MYOM3Q5VTT5 1437 aa12□□□□□ -0.49
TMC1-202ENST00000340019 ABCC10Q5T3U5 1492 aa12□□□□□ -0.49
TMC1-202ENST00000340019 CCNB3Q8WWL7 1395 aa11.99□□□□□ -0.49
TMC1-202ENST00000340019 FGD6Q6ZV73 1430 aa11.98□□□□□ -0.49
TMC1-202ENST00000340019 WDR7Q9Y4E6 1490 aa11.98□□□□□ -0.49
TMC1-202ENST00000340019 ITSN2Q9NZM3 1697 aa11.97□□□□□ -0.49
TMC1-202ENST00000340019 CDC42BPAQ5VT25 1732 aa11.96□□□□□ -0.49
TMC1-202ENST00000340019 ASXL2Q76L83 1435 aa11.96□□□□□ -0.49
TMC1-202ENST00000340019 GPATCH8Q9UKJ3 1502 aaKnown RBP11.96□□□□□ -0.49
TMC1-202ENST00000340019 MIA2Q96PC5 1412 aa11.96□□□□□ -0.49
TMC1-202ENST00000340019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.96□□□□□ -0.49
TMC1-202ENST00000340019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.96□□□□□ -0.5
TMC1-202ENST00000340019 NPM1P06748 294 aaKnown RBP eCLIP11.95□□□□□ -0.5
TMC1-202ENST00000340019 TTC37Q6PGP7 1564 aa11.95□□□□□ -0.5
TMC1-202ENST00000340019 PTPN23Q9H3S7 1636 aa11.95□□□□□ -0.5
TMC1-202ENST00000340019 MAPKBP1O60336 1514 aa11.95□□□□□ -0.5
TMC1-202ENST00000340019 TCOF1Q13428 1488 aaKnown RBP11.94□□□□□ -0.5
TMC1-202ENST00000340019 PREX2Q70Z35 1606 aa11.93□□□□□ -0.5
TMC1-202ENST00000340019 CDC42BPBQ9Y5S2 1711 aa11.92□□□□□ -0.5
TMC1-202ENST00000340019 ABCA9Q8IUA7 1624 aa11.92□□□□□ -0.5
TMC1-202ENST00000340019 MYO5CQ9NQX4 1742 aa11.92□□□□□ -0.5
TMC1-202ENST00000340019 KCNH8Q96L42 1107 aa11.91□□□□□ -0.5
TMC1-202ENST00000340019 FAM50AQ14320 339 aaKnown RBP11.89□□□□□ -0.51
TMC1-202ENST00000340019 CFDP1Q9UEE9 299 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms