RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 CLIP1P30622 1438 aa24.9■■□□□ 1.58
LITAF-201ENST00000339430 FHAD1B1AJZ9 1412 aa24.89■■□□□ 1.58
LITAF-201ENST00000339430 ADAMTS12P58397 1594 aa24.89■■□□□ 1.57
LITAF-201ENST00000339430 SNAPC4Q5SXM2 1469 aa24.88■■□□□ 1.57
LITAF-201ENST00000339430 MAGI1Q96QZ7 1491 aaPredicted RBP24.8■■□□□ 1.56
LITAF-201ENST00000339430 VPS8Q8N3P4 1428 aa24.76■■□□□ 1.55
LITAF-201ENST00000339430 CTTNBP2Q8WZ74 1663 aa24.75■■□□□ 1.55
LITAF-201ENST00000339430 CHMP7Q8WUX9 453 aaPredicted RBP24.73■■□□□ 1.55
LITAF-201ENST00000339430 SYNJ2O15056 1496 aa24.72■■□□□ 1.55
LITAF-201ENST00000339430 FBLN2P98095 1184 aa24.72■■□□□ 1.55
LITAF-201ENST00000339430 GRIN2AQ12879 1464 aa24.71■■□□□ 1.55
LITAF-201ENST00000339430 ARHGAP35Q9NRY4 1499 aa24.67■■□□□ 1.54
LITAF-201ENST00000339430 APLP2Q06481 763 aa24.66■■□□□ 1.54
LITAF-201ENST00000339430 ARAP1Q96P48 1450 aa24.64■■□□□ 1.53
LITAF-201ENST00000339430 HNRNPUL2Q1KMD3 747 aaKnown RBP24.64■■□□□ 1.53
LITAF-201ENST00000339430 P3H3Q8IVL6 736 aa24.59■■□□□ 1.53
LITAF-201ENST00000339430 IQGAP2Q13576 1575 aa24.58■■□□□ 1.52
LITAF-201ENST00000339430 CEP170Q5SW79 1584 aa24.56■■□□□ 1.52
LITAF-201ENST00000339430 KIAA0586Q9BVV6 1533 aa24.55■■□□□ 1.52
LITAF-201ENST00000339430 EFCAB5A4FU69 1503 aa24.54■■□□□ 1.52
LITAF-201ENST00000339430 CHD1O14646 1710 aa24.52■■□□□ 1.52
LITAF-201ENST00000339430 NUP160Q12769 1436 aa24.52■■□□□ 1.52
LITAF-201ENST00000339430 FHOD3Q2V2M9 1422 aa24.5■■□□□ 1.51
LITAF-201ENST00000339430 SAMD9Q5K651 1589 aa24.48■■□□□ 1.51
LITAF-201ENST00000339430 UGGT2Q9NYU1 1516 aa24.44■■□□□ 1.5
LITAF-201ENST00000339430 DIEXFQ68CQ4 756 aaKnown RBP24.4■■□□□ 1.5
LITAF-201ENST00000339430 KANK4Q5T7N3 995 aaPredicted RBP24.38■■□□□ 1.49
LITAF-201ENST00000339430 JPH4Q96JJ6 628 aa24.38■■□□□ 1.49
LITAF-201ENST00000339430 DISP1Q96F81 1524 aa24.36■■□□□ 1.49
LITAF-201ENST00000339430 FMN1Q68DA7 1419 aa24.35■■□□□ 1.49
LITAF-201ENST00000339430 KIAA0556O60303 1618 aa24.33■■□□□ 1.48
LITAF-201ENST00000339430 PCF11O94913 1555 aaKnown RBP24.32■■□□□ 1.48
LITAF-201ENST00000339430 ATP1B4Q9UN42 357 aaPredicted RBP24.31■■□□□ 1.48
LITAF-201ENST00000339430 CASKIN1Q8WXD9 1431 aa24.28■■□□□ 1.48
LITAF-201ENST00000339430 ZNF316A6NFI3 1004 aaPredicted RBP24.26■■□□□ 1.47
LITAF-201ENST00000339430 CARMIL2Q6F5E8 1435 aa24.26■■□□□ 1.47
LITAF-201ENST00000339430 FYCO1Q9BQS8 1478 aa24.26■■□□□ 1.47
LITAF-201ENST00000339430 SCAF1Q9H7N4 1312 aaKnown RBP24.24■■□□□ 1.47
LITAF-201ENST00000339430 PRG4Q92954 1404 aaPredicted RBP24.23■■□□□ 1.47
LITAF-201ENST00000339430 CLASP1Q7Z460 1538 aa24.21■■□□□ 1.47
LITAF-201ENST00000339430 SHROOM2Q13796 1616 aa24.19■■□□□ 1.46
LITAF-201ENST00000339430 TIAM1Q13009 1591 aa24.18■■□□□ 1.46
LITAF-201ENST00000339430 MAP3K1Q13233 1512 aa24.16■■□□□ 1.46
LITAF-201ENST00000339430 RRBP1Q9P2E9 1410 aaKnown RBP24.14■■□□□ 1.45
LITAF-201ENST00000339430 CFAP43Q8NDM7 1665 aa24.12■■□□□ 1.45
LITAF-201ENST00000339430 OSCARQ8IYS5 282 aa24.12■■□□□ 1.45
LITAF-201ENST00000339430 LRRIQ1Q96JM4 1722 aa24.12■■□□□ 1.45
LITAF-201ENST00000339430 ERCC6L2Q5T890 1561 aa24.1■■□□□ 1.45
LITAF-201ENST00000339430 HECW1Q76N89 1606 aa24.1■■□□□ 1.45
LITAF-201ENST00000339430 LRRC9Q6ZRR7 1453 aa24.08■■□□□ 1.45
LITAF-201ENST00000339430 DHX57Q6P158 1386 aaKnown RBP24.08■■□□□ 1.45
LITAF-201ENST00000339430 ITGAEP38570 1179 aa24.08■■□□□ 1.45
LITAF-201ENST00000339430 ARID3CA6NKF2 412 aa24.08■■□□□ 1.44
LITAF-201ENST00000339430 PLB1Q6P1J6 1458 aa24.07■■□□□ 1.44
LITAF-201ENST00000339430 CCNB3Q8WWL7 1395 aa24.07■■□□□ 1.44
LITAF-201ENST00000339430 NEUROD1Q13562 356 aa24.07■■□□□ 1.44
LITAF-201ENST00000339430 RAPGEF6Q8TEU7 1601 aa24.07■■□□□ 1.44
LITAF-201ENST00000339430 ACIN1Q9UKV3 1341 aaKnown RBP24.06■■□□□ 1.44
LITAF-201ENST00000339430 PTPRGP23470 1445 aa24.06■■□□□ 1.44
LITAF-201ENST00000339430 EPRSP07814 1512 aaKnown RBP24.04■■□□□ 1.44
LITAF-201ENST00000339430 NUP153P49790 1475 aaKnown RBP24.03■■□□□ 1.44
LITAF-201ENST00000339430 CCDC18Q5T9S5 1454 aa24.03■■□□□ 1.44
LITAF-201ENST00000339430 CDK13Q14004 1512 aaKnown RBP24.01■■□□□ 1.43
LITAF-201ENST00000339430 ABCA8O94911 1581 aa23.98■■□□□ 1.43
LITAF-201ENST00000339430 MTUS2Q5JR59 1369 aa23.98■■□□□ 1.43
LITAF-201ENST00000339430 CLSPNQ9HAW4 1339 aa23.96■■□□□ 1.43
LITAF-201ENST00000339430 CENPBP07199 599 aaPredicted RBP23.95■■□□□ 1.42
LITAF-201ENST00000339430 MAGI3Q5TCQ9 1506 aa23.93■■□□□ 1.42
LITAF-201ENST00000339430 MIER1Q8N108 512 aa23.92■■□□□ 1.42
LITAF-201ENST00000339430 UACAQ9BZF9 1416 aa23.9■■□□□ 1.42
LITAF-201ENST00000339430 EHBP1L1Q8N3D4 1523 aa23.89■■□□□ 1.42
LITAF-201ENST00000339430 PHLDB1Q86UU1 1377 aa23.89■■□□□ 1.41
LITAF-201ENST00000339430 YTHDC1Q96MU7 727 aaKnown RBP23.88■■□□□ 1.41
LITAF-201ENST00000339430 CDK11AQ9UQ88 783 aaPredicted RBP23.85■■□□□ 1.41
LITAF-201ENST00000339430 ATP10BO94823 1461 aa23.85■■□□□ 1.41
LITAF-201ENST00000339430 RAB3GAP2Q9H2M9 1393 aa23.84■■□□□ 1.41
LITAF-201ENST00000339430 FAM50AQ14320 339 aaKnown RBP23.84■■□□□ 1.41
LITAF-201ENST00000339430 NCOA2Q15596 1464 aa23.83■■□□□ 1.41
LITAF-201ENST00000339430 SUPT6HQ7KZ85 1726 aaKnown RBP23.83■■□□□ 1.4
LITAF-201ENST00000339430 ABCC2Q92887 1545 aa23.82■■□□□ 1.4
LITAF-201ENST00000339430 GTF3C3Q9Y5Q9 886 aa23.81■■□□□ 1.4
LITAF-201ENST00000339430 PLEKHD1A6NEE1 506 aa23.76■■□□□ 1.39
LITAF-201ENST00000339430 TROQ12816 1431 aaPredicted RBP23.76■■□□□ 1.39
LITAF-201ENST00000339430 ARHGEF11O15085 1522 aa23.75■■□□□ 1.39
LITAF-201ENST00000339430 UHRF1BP1LA0JNW5 1464 aa23.75■■□□□ 1.39
LITAF-201ENST00000339430 SETD5Q9C0A6 1442 aa23.74■■□□□ 1.39
LITAF-201ENST00000339430 MYOM3Q5VTT5 1437 aa23.71■■□□□ 1.39
LITAF-201ENST00000339430 MAPKBP1O60336 1514 aa23.71■■□□□ 1.39
LITAF-201ENST00000339430 FGD6Q6ZV73 1430 aa23.7■■□□□ 1.38
LITAF-201ENST00000339430 ADCY10Q96PN6 1610 aa23.69■■□□□ 1.38
LITAF-201ENST00000339430 KIF14Q15058 1648 aa23.68■■□□□ 1.38
LITAF-201ENST00000339430 KDM5BQ9UGL1 1544 aa23.68■■□□□ 1.38
LITAF-201ENST00000339430 ZCCHC11Q5TAX3 1644 aaKnown RBP23.66■■□□□ 1.38
LITAF-201ENST00000339430 RIMBP3CA6NJZ7 1639 aa23.59■■□□□ 1.37
LITAF-201ENST00000339430 RIMBP3BA6NNM3 1639 aa23.59■■□□□ 1.37
LITAF-201ENST00000339430 RIMBP3Q9UFD9 1639 aa23.59■■□□□ 1.37
LITAF-201ENST00000339430 PTPN23Q9H3S7 1636 aa23.58■■□□□ 1.37
LITAF-201ENST00000339430 SIN3AQ96ST3 1273 aa23.58■■□□□ 1.37
LITAF-201ENST00000339430 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.58■■□□□ 1.37
LITAF-201ENST00000339430 MIA2Q96PC5 1412 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms