RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CLASP1Q7Z460 1538 aa36.2■■■■□ 3.39
SDC3-202ENST00000339394 UBTFP17480 764 aaKnown RBP36.2■■■■□ 3.39
SDC3-202ENST00000339394 LOC105371045A0A1W2PR82 267 aa36.12■■■■□ 3.37
SDC3-202ENST00000339394 JPH4Q96JJ6 628 aa36.1■■■■□ 3.37
SDC3-202ENST00000339394 IQGAP2Q13576 1575 aa36.06■■■■□ 3.36
SDC3-202ENST00000339394 CTTNBP2Q8WZ74 1663 aa36.01■■■■□ 3.36
SDC3-202ENST00000339394 DNAJC5Q9H3Z4 198 aa35.98■■■■□ 3.35
SDC3-202ENST00000339394 TNIKQ9UKE5 1360 aa35.96■■■■□ 3.35
SDC3-202ENST00000339394 SHROOM2Q13796 1616 aa35.95■■■■□ 3.35
SDC3-202ENST00000339394 PRG4Q92954 1404 aaPredicted RBP35.93■■■■□ 3.34
SDC3-202ENST00000339394 RANGAP1P46060 587 aaPredicted RBP35.93■■■■□ 3.34
SDC3-202ENST00000339394 UGGT2Q9NYU1 1516 aa35.9■■■■□ 3.34
SDC3-202ENST00000339394 ARHGEF11O15085 1522 aa35.83■■■■□ 3.33
SDC3-202ENST00000339394 ERCC6L2Q5T890 1561 aa35.81■■■■□ 3.32
SDC3-202ENST00000339394 DISP1Q96F81 1524 aa35.81■■■■□ 3.32
SDC3-202ENST00000339394 CARMIL2Q6F5E8 1435 aa35.8■■■■□ 3.32
SDC3-202ENST00000339394 P3H3Q8IVL6 736 aa35.73■■■■□ 3.31
SDC3-202ENST00000339394 RIMBP3CA6NJZ7 1639 aa35.71■■■■□ 3.31
SDC3-202ENST00000339394 RIMBP3BA6NNM3 1639 aa35.71■■■■□ 3.31
SDC3-202ENST00000339394 RIMBP3Q9UFD9 1639 aa35.71■■■■□ 3.31
SDC3-202ENST00000339394 KIAA0556O60303 1618 aa35.7■■■■□ 3.3
SDC3-202ENST00000339394 SAMD9Q5K651 1589 aa35.68■■■■□ 3.3
SDC3-202ENST00000339394 CLIP1P30622 1438 aa35.67■■■■□ 3.3
SDC3-202ENST00000339394 CEP162Q5TB80 1403 aa35.66■■■■□ 3.3
SDC3-202ENST00000339394 EFCAB5A4FU69 1503 aa35.65■■■■□ 3.3
SDC3-202ENST00000339394 ARHGAP35Q9NRY4 1499 aa35.65■■■■□ 3.3
SDC3-202ENST00000339394 TTBK1Q5TCY1 1321 aaPredicted RBP35.62■■■■□ 3.29
SDC3-202ENST00000339394 PTPRGP23470 1445 aa35.6■■■■□ 3.29
SDC3-202ENST00000339394 ARAP1Q96P48 1450 aa35.6■■■■□ 3.29
SDC3-202ENST00000339394 FHOD3Q2V2M9 1422 aa35.59■■■■□ 3.29
SDC3-202ENST00000339394 CYB5RLQ6IPT4 315 aa35.58■■■■□ 3.29
SDC3-202ENST00000339394 FMN1Q68DA7 1419 aa35.38■■■■□ 3.25
SDC3-202ENST00000339394 PLB1Q6P1J6 1458 aa35.37■■■■□ 3.25
SDC3-202ENST00000339394 UACAQ9BZF9 1416 aa35.36■■■■□ 3.25
SDC3-202ENST00000339394 ABCA8O94911 1581 aa35.27■■■■□ 3.24
SDC3-202ENST00000339394 UHRF1BP1LA0JNW5 1464 aa35.25■■■■□ 3.23
SDC3-202ENST00000339394 ABCC2Q92887 1545 aa35.24■■■■□ 3.23
SDC3-202ENST00000339394 ADCY10Q96PN6 1610 aa35.22■■■■□ 3.23
SDC3-202ENST00000339394 ATP1B4Q9UN42 357 aaPredicted RBP35.19■■■■□ 3.22
SDC3-202ENST00000339394 RAPGEF6Q8TEU7 1601 aa35.19■■■■□ 3.22
SDC3-202ENST00000339394 VPS8Q8N3P4 1428 aa35.18■■■■□ 3.22
SDC3-202ENST00000339394 CASKIN1Q8WXD9 1431 aa35.17■■■■□ 3.22
SDC3-202ENST00000339394 ARID3CA6NKF2 412 aa35.15■■■■□ 3.22
SDC3-202ENST00000339394 NUP153P49790 1475 aaKnown RBP35.15■■■■□ 3.22
SDC3-202ENST00000339394 NPM1P06748 294 aaKnown RBP eCLIP35.13■■■■□ 3.21
SDC3-202ENST00000339394 PCF11O94913 1555 aaKnown RBP35.11■■■■□ 3.21
SDC3-202ENST00000339394 KDM5BQ9UGL1 1544 aa35.1■■■■□ 3.21
SDC3-202ENST00000339394 FYCO1Q9BQS8 1478 aa35.09■■■■□ 3.21
SDC3-202ENST00000339394 ATP10BO94823 1461 aa35.06■■■■□ 3.2
SDC3-202ENST00000339394 HECW1Q76N89 1606 aa35.05■■■■□ 3.2
SDC3-202ENST00000339394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.02■■■■□ 3.2
SDC3-202ENST00000339394 HNRNPUL2Q1KMD3 747 aaKnown RBP35.02■■■■□ 3.2
SDC3-202ENST00000339394 EPRSP07814 1512 aaKnown RBP35■■■■□ 3.19
SDC3-202ENST00000339394 ZCCHC11Q5TAX3 1644 aaKnown RBP34.96■■■■□ 3.19
SDC3-202ENST00000339394 CDK13Q14004 1512 aaKnown RBP34.96■■■■□ 3.19
SDC3-202ENST00000339394 CCDC18Q5T9S5 1454 aa34.92■■■■□ 3.18
SDC3-202ENST00000339394 ASXL2Q76L83 1435 aa34.89■■■■□ 3.18
SDC3-202ENST00000339394 MAPKBP1O60336 1514 aa34.87■■■■□ 3.17
SDC3-202ENST00000339394 LRRIQ1Q96JM4 1722 aa34.87■■■■□ 3.17
SDC3-202ENST00000339394 PLEKHD1A6NEE1 506 aa34.86■■■■□ 3.17
SDC3-202ENST00000339394 CDK11AQ9UQ88 783 aaPredicted RBP34.86■■■■□ 3.17
SDC3-202ENST00000339394 APLP2Q06481 763 aa34.82■■■■□ 3.16
SDC3-202ENST00000339394 WDR7Q9Y4E6 1490 aa34.79■■■■□ 3.16
SDC3-202ENST00000339394 KCNH8Q96L42 1107 aa34.76■■■■□ 3.16
SDC3-202ENST00000339394 MAP3K1Q13233 1512 aa34.74■■■■□ 3.15
SDC3-202ENST00000339394 TIAM1Q13009 1591 aa34.74■■■■□ 3.15
SDC3-202ENST00000339394 MAGI3Q5TCQ9 1506 aa34.71■■■■□ 3.15
SDC3-202ENST00000339394 TROQ12816 1431 aaPredicted RBP34.7■■■■□ 3.15
SDC3-202ENST00000339394 KANK4Q5T7N3 995 aaPredicted RBP34.7■■■■□ 3.14
SDC3-202ENST00000339394 MTUS2Q5JR59 1369 aa34.69■■■■□ 3.14
SDC3-202ENST00000339394 CFAP43Q8NDM7 1665 aa34.67■■■■□ 3.14
SDC3-202ENST00000339394 ABCC10Q5T3U5 1492 aa34.67■■■■□ 3.14
SDC3-202ENST00000339394 FAM69CQ0P6D2 419 aa34.64■■■■□ 3.14
SDC3-202ENST00000339394 LRRC9Q6ZRR7 1453 aa34.64■■■■□ 3.14
SDC3-202ENST00000339394 TRHP20396 242 aaPredicted RBP34.62■■■■□ 3.13
SDC3-202ENST00000339394 DIP2BQ9P265 1576 aa34.58■■■■□ 3.13
SDC3-202ENST00000339394 EHBP1L1Q8N3D4 1523 aa34.56■■■■□ 3.12
SDC3-202ENST00000339394 GLI2P10070 1586 aa34.52■■■■□ 3.12
SDC3-202ENST00000339394 PPARGC1BQ86YN6 1023 aaKnown RBP34.51■■■■□ 3.12
SDC3-202ENST00000339394 KIF14Q15058 1648 aa34.51■■■■□ 3.11
SDC3-202ENST00000339394 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.49■■■■□ 3.112e-6■■■■□ 22.1
SDC3-202ENST00000339394 CD109Q6YHK3 1445 aa34.44■■■■□ 3.1
SDC3-202ENST00000339394 ABCA9Q8IUA7 1624 aa34.44■■■■□ 3.1
SDC3-202ENST00000339394 KIF13AQ9H1H9 1805 aa34.43■■■■□ 3.1
SDC3-202ENST00000339394 NCOA2Q15596 1464 aa34.42■■■■□ 3.1
SDC3-202ENST00000339394 TTC37Q6PGP7 1564 aa34.42■■■■□ 3.1
SDC3-202ENST00000339394 SUPT6HQ7KZ85 1726 aaKnown RBP34.38■■■■□ 3.09
SDC3-202ENST00000339394 CCNB3Q8WWL7 1395 aa34.36■■■■□ 3.09
SDC3-202ENST00000339394 MAP3K4Q9Y6R4 1608 aa34.36■■■■□ 3.09
SDC3-202ENST00000339394 PLCH2O75038 1416 aa34.33■■■■□ 3.09
SDC3-202ENST00000339394 GPATCH8Q9UKJ3 1502 aaKnown RBP34.32■■■■□ 3.08
SDC3-202ENST00000339394 PHLDB1Q86UU1 1377 aa34.29■■■■□ 3.08
SDC3-202ENST00000339394 CFDP1Q9UEE9 299 aaPredicted RBP34.26■■■■□ 3.07
SDC3-202ENST00000339394 EFCAB2Q5VUJ9 269 aa34.23■■■■□ 3.07
SDC3-202ENST00000339394 MYO5CQ9NQX4 1742 aa34.21■■■■□ 3.07
SDC3-202ENST00000339394 ARAP3Q8WWN8 1544 aa34.21■■■■□ 3.07
SDC3-202ENST00000339394 MYOM3Q5VTT5 1437 aa34.21■■■■□ 3.07
SDC3-202ENST00000339394 TSPOAP1O95153 1857 aa34.2■■■■□ 3.07
SDC3-202ENST00000339394 ARHGAP5Q13017 1502 aa34.2■■■■□ 3.07
SDC3-202ENST00000339394 FANCAO15360 1455 aa34.2■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms