RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 RAPGEF2Q9Y4G8 1499 aa25.4■■□□□ 1.66
SEC13-201ENST00000337354 NUP160Q12769 1436 aa25.37■■□□□ 1.65
SEC13-201ENST00000337354 ARAP1Q96P48 1450 aa25.3■■□□□ 1.64
SEC13-201ENST00000337354 SHROOM2Q13796 1616 aa25.25■■□□□ 1.63
SEC13-201ENST00000337354 KIAA0586Q9BVV6 1533 aa25.23■■□□□ 1.63
SEC13-201ENST00000337354 JPH4Q96JJ6 628 aa25.2■■□□□ 1.63
SEC13-201ENST00000337354 ERCC6L2Q5T890 1561 aa25.19■■□□□ 1.62
SEC13-201ENST00000337354 CYB5RLQ6IPT4 315 aa25.18■■□□□ 1.62
SEC13-201ENST00000337354 KIF21BO75037 1637 aa25.16■■□□□ 1.62
SEC13-201ENST00000337354 GOLGA3Q08378 1498 aa25.11■■□□□ 1.61
SEC13-201ENST00000337354 UBTFP17480 764 aaKnown RBP25.11■■□□□ 1.61
SEC13-201ENST00000337354 PRG4Q92954 1404 aaPredicted RBP25.08■■□□□ 1.61
SEC13-201ENST00000337354 IQGAP2Q13576 1575 aa25.06■■□□□ 1.6
SEC13-201ENST00000337354 CTTNBP2Q8WZ74 1663 aa25.06■■□□□ 1.6
SEC13-201ENST00000337354 EHMT2Q96KQ7 1210 aa25.05■■□□□ 1.6
SEC13-201ENST00000337354 CARMIL2Q6F5E8 1435 aa24.99■■□□□ 1.59
SEC13-201ENST00000337354 UGGT2Q9NYU1 1516 aa24.97■■□□□ 1.59
SEC13-201ENST00000337354 TNIKQ9UKE5 1360 aa24.92■■□□□ 1.58
SEC13-201ENST00000337354 DISP1Q96F81 1524 aa24.89■■□□□ 1.57
SEC13-201ENST00000337354 LOC105371045A0A1W2PR82 267 aa24.88■■□□□ 1.57
SEC13-201ENST00000337354 RANGAP1P46060 587 aaPredicted RBP24.85■■□□□ 1.57
SEC13-201ENST00000337354 PTPRGP23470 1445 aa24.84■■□□□ 1.57
SEC13-201ENST00000337354 KIAA0556O60303 1618 aa24.83■■□□□ 1.57
SEC13-201ENST00000337354 ADCY10Q96PN6 1610 aa24.79■■□□□ 1.56
SEC13-201ENST00000337354 TTBK1Q5TCY1 1321 aaPredicted RBP24.79■■□□□ 1.56
SEC13-201ENST00000337354 P3H3Q8IVL6 736 aa24.79■■□□□ 1.56
SEC13-201ENST00000337354 EFCAB5A4FU69 1503 aa24.75■■□□□ 1.55
SEC13-201ENST00000337354 TRHP20396 242 aaPredicted RBP24.75■■□□□ 1.55
SEC13-201ENST00000337354 SAMD9Q5K651 1589 aa24.73■■□□□ 1.55
SEC13-201ENST00000337354 CLIP1P30622 1438 aa24.69■■□□□ 1.54
SEC13-201ENST00000337354 ARHGAP35Q9NRY4 1499 aa24.69■■□□□ 1.54
SEC13-201ENST00000337354 FHOD3Q2V2M9 1422 aa24.66■■□□□ 1.54
SEC13-201ENST00000337354 UACAQ9BZF9 1416 aa24.66■■□□□ 1.54
SEC13-201ENST00000337354 CEP162Q5TB80 1403 aa24.63■■□□□ 1.53
SEC13-201ENST00000337354 NPM1P06748 294 aaKnown RBP eCLIP24.62■■□□□ 1.53
SEC13-201ENST00000337354 ABCC2Q92887 1545 aa24.61■■□□□ 1.53
SEC13-201ENST00000337354 FMN1Q68DA7 1419 aa24.6■■□□□ 1.53
SEC13-201ENST00000337354 UHRF1BP1LA0JNW5 1464 aa24.6■■□□□ 1.53
SEC13-201ENST00000337354 MAPKBP1O60336 1514 aa24.6■■□□□ 1.53
SEC13-201ENST00000337354 KIF13AQ9H1H9 1805 aa24.59■■□□□ 1.53
SEC13-201ENST00000337354 PLB1Q6P1J6 1458 aa24.57■■□□□ 1.52
SEC13-201ENST00000337354 ZCCHC11Q5TAX3 1644 aaKnown RBP24.53■■□□□ 1.52
SEC13-201ENST00000337354 ABCA8O94911 1581 aa24.52■■□□□ 1.52
SEC13-201ENST00000337354 DIP2BQ9P265 1576 aa24.51■■□□□ 1.51
SEC13-201ENST00000337354 KDM5BQ9UGL1 1544 aa24.47■■□□□ 1.51
SEC13-201ENST00000337354 ABCC10Q5T3U5 1492 aa24.46■■□□□ 1.51
SEC13-201ENST00000337354 RAPGEF6Q8TEU7 1601 aa24.44■■□□□ 1.5
SEC13-201ENST00000337354 ATP1B4Q9UN42 357 aaPredicted RBP24.43■■□□□ 1.5
SEC13-201ENST00000337354 ASXL2Q76L83 1435 aa24.43■■□□□ 1.5
SEC13-201ENST00000337354 CASKIN1Q8WXD9 1431 aa24.41■■□□□ 1.5
SEC13-201ENST00000337354 NUP153P49790 1475 aaKnown RBP24.4■■□□□ 1.5
SEC13-201ENST00000337354 ATP10BO94823 1461 aa24.39■■□□□ 1.5
SEC13-201ENST00000337354 TSPOAP1O95153 1857 aa24.39■■□□□ 1.49
SEC13-201ENST00000337354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.39■■□□□ 1.49
SEC13-201ENST00000337354 HNRNPUL2Q1KMD3 747 aaKnown RBP24.39■■□□□ 1.49
SEC13-201ENST00000337354 FAM69CQ0P6D2 419 aa24.38■■□□□ 1.49
SEC13-201ENST00000337354 ARID3CA6NKF2 412 aa24.37■■□□□ 1.49
SEC13-201ENST00000337354 VPS8Q8N3P4 1428 aa24.34■■□□□ 1.49
SEC13-201ENST00000337354 FYCO1Q9BQS8 1478 aa24.33■■□□□ 1.48
SEC13-201ENST00000337354 PLEKHD1A6NEE1 506 aa24.32■■□□□ 1.48
SEC13-201ENST00000337354 CDK11AQ9UQ88 783 aaPredicted RBP24.32■■□□□ 1.48
SEC13-201ENST00000337354 WDR7Q9Y4E6 1490 aa24.32■■□□□ 1.48
SEC13-201ENST00000337354 HECW1Q76N89 1606 aa24.31■■□□□ 1.48
SEC13-201ENST00000337354 EPRSP07814 1512 aaKnown RBP24.3■■□□□ 1.48
SEC13-201ENST00000337354 GLI2P10070 1586 aa24.3■■□□□ 1.48
SEC13-201ENST00000337354 CCDC18Q5T9S5 1454 aa24.26■■□□□ 1.47
SEC13-201ENST00000337354 PCF11O94913 1555 aaKnown RBP24.26■■□□□ 1.47
SEC13-201ENST00000337354 MAP3K4Q9Y6R4 1608 aa24.25■■□□□ 1.47
SEC13-201ENST00000337354 PPRC1Q5VV67 1664 aaKnown RBP24.22■■□□□ 1.47
SEC13-201ENST00000337354 CDK13Q14004 1512 aaKnown RBP24.21■■□□□ 1.47
SEC13-201ENST00000337354 KCNH8Q96L42 1107 aa24.21■■□□□ 1.47
SEC13-201ENST00000337354 CFAP43Q8NDM7 1665 aa24.2■■□□□ 1.46
SEC13-201ENST00000337354 APLP2Q06481 763 aa24.17■■□□□ 1.46
SEC13-201ENST00000337354 KDM6BO15054 1643 aa24.17■■□□□ 1.46
SEC13-201ENST00000337354 TROQ12816 1431 aaPredicted RBP24.13■■□□□ 1.45
SEC13-201ENST00000337354 LRRIQ1Q96JM4 1722 aa24.11■■□□□ 1.45
SEC13-201ENST00000337354 TEX14Q8IWB6 1497 aa24.11■■□□□ 1.45
SEC13-201ENST00000337354 MAP3K1Q13233 1512 aa24.1■■□□□ 1.45
SEC13-201ENST00000337354 ABCA9Q8IUA7 1624 aa24.09■■□□□ 1.45
SEC13-201ENST00000337354 MTUS2Q5JR59 1369 aa24.08■■□□□ 1.45
SEC13-201ENST00000337354 CD109Q6YHK3 1445 aa24.05■■□□□ 1.44
SEC13-201ENST00000337354 TIAM1Q13009 1591 aa24.02■■□□□ 1.44
SEC13-201ENST00000337354 MAGI3Q5TCQ9 1506 aa24.02■■□□□ 1.44
SEC13-201ENST00000337354 KANK4Q5T7N3 995 aaPredicted RBP24■■□□□ 1.43
SEC13-201ENST00000337354 LRRC9Q6ZRR7 1453 aa23.99■■□□□ 1.43
SEC13-201ENST00000337354 TTC37Q6PGP7 1564 aa23.98■■□□□ 1.43
SEC13-201ENST00000337354 EHBP1L1Q8N3D4 1523 aa23.96■■□□□ 1.43
SEC13-201ENST00000337354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.96■■□□□ 1.434e-7■■■■□ 22.2
SEC13-201ENST00000337354 KIF14Q15058 1648 aa23.95■■□□□ 1.42
SEC13-201ENST00000337354 PLCH2O75038 1416 aa23.93■■□□□ 1.42
SEC13-201ENST00000337354 CFAP74Q9C0B2 1584 aa23.9■■□□□ 1.42
SEC13-201ENST00000337354 MYO5CQ9NQX4 1742 aa23.9■■□□□ 1.42
SEC13-201ENST00000337354 EFCAB2Q5VUJ9 269 aa23.9■■□□□ 1.42
SEC13-201ENST00000337354 PHLDB1Q86UU1 1377 aa23.89■■□□□ 1.42
SEC13-201ENST00000337354 CCNB3Q8WWL7 1395 aa23.89■■□□□ 1.41
SEC13-201ENST00000337354 COL17A1Q9UMD9 1497 aaPredicted RBP23.87■■□□□ 1.41
SEC13-201ENST00000337354 NCOA2Q15596 1464 aa23.85■■□□□ 1.41
SEC13-201ENST00000337354 ARAP3Q8WWN8 1544 aa23.84■■□□□ 1.41
SEC13-201ENST00000337354 GPATCH8Q9UKJ3 1502 aaKnown RBP23.84■■□□□ 1.41
SEC13-201ENST00000337354 NEO1Q92859 1461 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms