RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 KIF21AQ7Z4S6 1674 aa13.09□□□□□ -0.31
SNCA-201ENST00000336904 DHX57Q6P158 1386 aaKnown RBP13.09□□□□□ -0.31
SNCA-201ENST00000336904 PHLDB1Q86UU1 1377 aa13.09□□□□□ -0.31
SNCA-201ENST00000336904 NEUROD1Q13562 356 aa13.09□□□□□ -0.31
SNCA-201ENST00000336904 PCF11O94913 1555 aaKnown RBP13.07□□□□□ -0.32
SNCA-201ENST00000336904 MIER1Q8N108 512 aa13.06□□□□□ -0.32
SNCA-201ENST00000336904 TIAM1Q13009 1591 aa13.05□□□□□ -0.32
SNCA-201ENST00000336904 AQRO60306 1485 aaKnown RBP eCLIP13.05□□□□□ -0.32
SNCA-201ENST00000336904 RRBP1Q9P2E9 1410 aaKnown RBP13.04□□□□□ -0.32
SNCA-201ENST00000336904 PDS5BQ9NTI5 1447 aa13.04□□□□□ -0.32
SNCA-201ENST00000336904 LAMC3Q9Y6N6 1575 aa13.04□□□□□ -0.32
SNCA-201ENST00000336904 GAPVD1Q14C86 1478 aa13.04□□□□□ -0.32
SNCA-201ENST00000336904 LRRC9Q6ZRR7 1453 aa13.03□□□□□ -0.32
SNCA-201ENST00000336904 RAB3GAP2Q9H2M9 1393 aa13.02□□□□□ -0.33
SNCA-201ENST00000336904 SIN3AQ96ST3 1273 aa13.01□□□□□ -0.33
SNCA-201ENST00000336904 FHAD1B1AJZ9 1412 aa12.98□□□□□ -0.33
SNCA-201ENST00000336904 HIRIP3Q9BW71 556 aaPredicted RBP12.97□□□□□ -0.33
SNCA-201ENST00000336904 ACIN1Q9UKV3 1341 aaKnown RBP12.97□□□□□ -0.33
SNCA-201ENST00000336904 FBLN2P98095 1184 aa12.97□□□□□ -0.33
SNCA-201ENST00000336904 WDR97A6NE52 1622 aa12.95□□□□□ -0.34
SNCA-201ENST00000336904 ZNF608Q9ULD9 1512 aaPredicted RBP12.95□□□□□ -0.34
SNCA-201ENST00000336904 MTUS2Q5JR59 1369 aa12.95□□□□□ -0.34
SNCA-201ENST00000336904 CTTNBP2Q8WZ74 1663 aa12.95□□□□□ -0.34
SNCA-201ENST00000336904 ABCA5Q8WWZ7 1642 aa12.94□□□□□ -0.34
SNCA-201ENST00000336904 CHIC2Q9UKJ5 165 aa12.94□□□□□ -0.34
SNCA-201ENST00000336904 CUL7Q14999 1698 aa12.94□□□□□ -0.34
SNCA-201ENST00000336904 GTF3C3Q9Y5Q9 886 aa12.93□□□□□ -0.34
SNCA-201ENST00000336904 CASKIN1Q8WXD9 1431 aa12.91□□□□□ -0.34
SNCA-201ENST00000336904 TARBP1Q13395 1621 aaKnown RBP12.9□□□□□ -0.34
SNCA-201ENST00000336904 SETD5Q9C0A6 1442 aa12.9□□□□□ -0.34
SNCA-201ENST00000336904 CFAP43Q8NDM7 1665 aa12.89□□□□□ -0.35
SNCA-201ENST00000336904 FYCO1Q9BQS8 1478 aa12.89□□□□□ -0.35
SNCA-201ENST00000336904 SNAPC4Q5SXM2 1469 aa12.88□□□□□ -0.35
SNCA-201ENST00000336904 RRP7BPQ9NSQ0 103 aa12.88□□□□□ -0.35
SNCA-201ENST00000336904 LRRIQ1Q96JM4 1722 aa12.88□□□□□ -0.35
SNCA-201ENST00000336904 FMN1Q68DA7 1419 aa12.88□□□□□ -0.35
SNCA-201ENST00000336904 MAPKBP1O60336 1514 aa12.87□□□□□ -0.35
SNCA-201ENST00000336904 CENPBP07199 599 aaPredicted RBP12.87□□□□□ -0.35
SNCA-201ENST00000336904 EFCAB5A4FU69 1503 aa12.87□□□□□ -0.35
SNCA-201ENST00000336904 ERCC6Q03468 1493 aa12.86□□□□□ -0.35
SNCA-201ENST00000336904 MRC2Q9UBG0 1479 aa12.86□□□□□ -0.35
SNCA-201ENST00000336904 PTPRKQ15262 1439 aa12.85□□□□□ -0.35
SNCA-201ENST00000336904 CDK13Q14004 1512 aaKnown RBP12.84□□□□□ -0.35
SNCA-201ENST00000336904 PBRM1Q86U86 1689 aa12.84□□□□□ -0.35
SNCA-201ENST00000336904 MAP3K1Q13233 1512 aa12.84□□□□□ -0.35
SNCA-201ENST00000336904 FGD6Q6ZV73 1430 aa12.84□□□□□ -0.35
SNCA-201ENST00000336904 MAGI3Q5TCQ9 1506 aa12.83□□□□□ -0.36
SNCA-201ENST00000336904 KCNH8Q96L42 1107 aa12.83□□□□□ -0.36
SNCA-201ENST00000336904 NCOA2Q15596 1464 aa12.82□□□□□ -0.36
SNCA-201ENST00000336904 CLSPNQ9HAW4 1339 aa12.81□□□□□ -0.36
SNCA-201ENST00000336904 SAMD9Q5K651 1589 aa12.81□□□□□ -0.36
SNCA-201ENST00000336904 GRIN2BQ13224 1484 aa12.8□□□□□ -0.36
SNCA-201ENST00000336904 FOXD1Q16676 465 aa12.8□□□□□ -0.36
SNCA-201ENST00000336904 CHMP7Q8WUX9 453 aaPredicted RBP12.79□□□□□ -0.36
SNCA-201ENST00000336904 TRIM52Q96A61 297 aa12.78□□□□□ -0.36
SNCA-201ENST00000336904 ADAMTS12P58397 1594 aa12.78□□□□□ -0.36
SNCA-201ENST00000336904 ZNF644Q9H582 1327 aaPredicted RBP12.78□□□□□ -0.36
SNCA-201ENST00000336904 DDX10Q13206 875 aaKnown RBP12.78□□□□□ -0.36
SNCA-201ENST00000336904 IQGAP2Q13576 1575 aa12.78□□□□□ -0.36
SNCA-201ENST00000336904 MYOM3Q5VTT5 1437 aa12.75□□□□□ -0.37
SNCA-201ENST00000336904 CCDC18Q5T9S5 1454 aa12.75□□□□□ -0.37
SNCA-201ENST00000336904 ZNF777Q9ULD5 760 aaPredicted RBP12.75□□□□□ -0.37
SNCA-201ENST00000336904 THOC2Q8NI27 1593 aaKnown RBP12.74□□□□□ -0.37
SNCA-201ENST00000336904 EIF4G3O43432 1585 aaKnown RBP12.73□□□□□ -0.37
SNCA-201ENST00000336904 EPRSP07814 1512 aaKnown RBP12.73□□□□□ -0.37
SNCA-201ENST00000336904 IFT140Q96RY7 1462 aa12.72□□□□□ -0.37
SNCA-201ENST00000336904 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.38
SNCA-201ENST00000336904 WDR62O43379 1518 aa12.7□□□□□ -0.38
SNCA-201ENST00000336904 NAIPQ13075 1403 aa12.7□□□□□ -0.38
SNCA-201ENST00000336904 PTPN23Q9H3S7 1636 aa12.7□□□□□ -0.38
SNCA-201ENST00000336904 EHBP1L1Q8N3D4 1523 aa12.69□□□□□ -0.38
SNCA-201ENST00000336904 TONSLQ96HA7 1378 aa12.69□□□□□ -0.38
SNCA-201ENST00000336904 GRIN2AQ12879 1464 aa12.68□□□□□ -0.38
SNCA-201ENST00000336904 KDM6BO15054 1643 aa12.68□□□□□ -0.38
SNCA-201ENST00000336904 DISP1Q96F81 1524 aa12.68□□□□□ -0.38
SNCA-201ENST00000336904 PLB1Q6P1J6 1458 aa12.68□□□□□ -0.38
SNCA-201ENST00000336904 UGGT2Q9NYU1 1516 aa12.68□□□□□ -0.38
SNCA-201ENST00000336904 HECW1Q76N89 1606 aa12.67□□□□□ -0.38
SNCA-201ENST00000336904 PPP1R15AO75807 674 aaPredicted RBP12.67□□□□□ -0.38
SNCA-201ENST00000336904 PRG4Q92954 1404 aaPredicted RBP12.67□□□□□ -0.38
SNCA-201ENST00000336904 HFM1A2PYH4 1435 aa12.66□□□□□ -0.38
SNCA-201ENST00000336904 JPH4Q96JJ6 628 aa12.64□□□□□ -0.39
SNCA-201ENST00000336904 NUP153P49790 1475 aaKnown RBP12.64□□□□□ -0.39
SNCA-201ENST00000336904 KIAA0586Q9BVV6 1533 aa12.64□□□□□ -0.39
SNCA-201ENST00000336904 KIAA0556O60303 1618 aa12.64□□□□□ -0.39
SNCA-201ENST00000336904 CNGB1Q14028 1251 aaPredicted RBP12.64□□□□□ -0.39
SNCA-201ENST00000336904 CEP170Q5SW79 1584 aa12.63□□□□□ -0.39
SNCA-201ENST00000336904 UACAQ9BZF9 1416 aa12.62□□□□□ -0.39
SNCA-201ENST00000336904 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.61□□□□□ -0.39
SNCA-201ENST00000336904 MPHOSPH9Q99550 1183 aa12.6□□□□□ -0.39
SNCA-201ENST00000336904 CFDP1Q9UEE9 299 aaPredicted RBP12.6□□□□□ -0.39
SNCA-201ENST00000336904 ARHGEF11O15085 1522 aa12.59□□□□□ -0.39
SNCA-201ENST00000336904 ZNF326Q5BKZ1 582 aaKnown RBP12.58□□□□□ -0.4
SNCA-201ENST00000336904 RAPGEF6Q8TEU7 1601 aa12.57□□□□□ -0.4
SNCA-201ENST00000336904 SYNJ2O15056 1496 aa12.57□□□□□ -0.4
SNCA-201ENST00000336904 DENND4BO75064 1496 aaPredicted RBP12.57□□□□□ -0.4
SNCA-201ENST00000336904 SLC4A1APQ9BWU0 796 aaKnown RBP12.56□□□□□ -0.4
SNCA-201ENST00000336904 CDK11AQ9UQ88 783 aaPredicted RBP12.56□□□□□ -0.4
SNCA-201ENST00000336904 KIF14Q15058 1648 aa12.56□□□□□ -0.4
SNCA-201ENST00000336904 L3MBTL2Q969R5 705 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms