RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CCNB3Q8WWL7 1395 aa9.64□□□□□ -0.87
SF3B1-201ENST00000335508 KCNH8Q96L42 1107 aa9.64□□□□□ -0.87
SF3B1-201ENST00000335508 PEG3Q9GZU2 1588 aa9.63□□□□□ -0.87
SF3B1-201ENST00000335508 EFCAB2Q5VUJ9 269 aa9.63□□□□□ -0.87
SF3B1-201ENST00000335508 FGD5Q6ZNL6 1462 aa9.62□□□□□ -0.87
SF3B1-201ENST00000335508 CHIC2Q9UKJ5 165 aa9.62□□□□□ -0.87
SF3B1-201ENST00000335508 GAPVD1Q14C86 1478 aa9.61□□□□□ -0.87
SF3B1-201ENST00000335508 POLR3GLQ9BT43 218 aa9.61□□□□□ -0.87
SF3B1-201ENST00000335508 OSCARQ8IYS5 282 aa9.61□□□□□ -0.87
SF3B1-201ENST00000335508 ZNF316A6NFI3 1004 aaPredicted RBP9.6□□□□□ -0.87
SF3B1-201ENST00000335508 DIEXFQ68CQ4 756 aaKnown RBP9.6□□□□□ -0.87
SF3B1-201ENST00000335508 SLC4A1APQ9BWU0 796 aaKnown RBP9.59□□□□□ -0.87
SF3B1-201ENST00000335508 ZNF326Q5BKZ1 582 aaKnown RBP9.59□□□□□ -0.87
SF3B1-201ENST00000335508 ERICH6Q7L0X2 663 aa9.58□□□□□ -0.88
SF3B1-201ENST00000335508 PTPRGP23470 1445 aa9.57□□□□□ -0.88
SF3B1-201ENST00000335508 GRIN2BQ13224 1484 aa9.57□□□□□ -0.88
SF3B1-201ENST00000335508 CC2D2AQ9P2K1 1620 aa9.54□□□□□ -0.88
SF3B1-201ENST00000335508 IFT140Q96RY7 1462 aa9.54□□□□□ -0.88
SF3B1-201ENST00000335508 STAG3Q9UJ98 1225 aa9.54□□□□□ -0.88
SF3B1-201ENST00000335508 ANP32CO43423 234 aa9.54□□□□□ -0.88
SF3B1-201ENST00000335508 RRP7BPQ9NSQ0 103 aa9.54□□□□□ -0.88
SF3B1-201ENST00000335508 DNAJC5BQ9UF47 199 aa9.54□□□□□ -0.88
SF3B1-201ENST00000335508 MRC2Q9UBG0 1479 aa9.53□□□□□ -0.88
SF3B1-201ENST00000335508 PRXQ9BXM0 1461 aa9.53□□□□□ -0.88
SF3B1-201ENST00000335508 TOPBP1Q92547 1522 aa9.52□□□□□ -0.89
SF3B1-201ENST00000335508 POLA1P09884 1462 aaPredicted RBP9.51□□□□□ -0.89
SF3B1-201ENST00000335508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.51□□□□□ -0.898e-9■■□□□ 11.5
SF3B1-201ENST00000335508 CCDC18Q5T9S5 1454 aa9.5□□□□□ -0.89
SF3B1-201ENST00000335508 RAD54L2Q9Y4B4 1467 aa9.5□□□□□ -0.89
SF3B1-201ENST00000335508 LAMC3Q9Y6N6 1575 aa9.5□□□□□ -0.89
SF3B1-201ENST00000335508 FHOD3Q2V2M9 1422 aa9.5□□□□□ -0.89
SF3B1-201ENST00000335508 ARHGAP35Q9NRY4 1499 aa9.49□□□□□ -0.89
SF3B1-201ENST00000335508 CHGAP10645 457 aaKnown RBP9.49□□□□□ -0.89
SF3B1-201ENST00000335508 KANK4Q5T7N3 995 aaPredicted RBP9.49□□□□□ -0.89
SF3B1-201ENST00000335508 RUSC2Q8N2Y8 1516 aa9.49□□□□□ -0.89
SF3B1-201ENST00000335508 NESP48681 1621 aa9.48□□□□□ -0.89
SF3B1-201ENST00000335508 ERICH3Q5RHP9 1530 aa9.48□□□□□ -0.89
SF3B1-201ENST00000335508 EIF4G2P78344 907 aaKnown RBP eCLIP9.48□□□□□ -0.89
SF3B1-201ENST00000335508 ANKRD30AQ9BXX3 1397 aa9.47□□□□□ -0.89
SF3B1-201ENST00000335508 AQRO60306 1485 aaKnown RBP eCLIP9.47□□□□□ -0.899e-7■■■□□ 17
SF3B1-201ENST00000335508 ABCA10Q8WWZ4 1543 aa9.47□□□□□ -0.89
SF3B1-201ENST00000335508 CDCA8Q53HL2 280 aa9.46□□□□□ -0.89
SF3B1-201ENST00000335508 BCANQ96GW7 911 aa9.45□□□□□ -0.9
SF3B1-201ENST00000335508 YTHDC1Q96MU7 727 aaKnown RBP9.45□□□□□ -0.9
SF3B1-201ENST00000335508 NEFMP07197 916 aa9.44□□□□□ -0.9
SF3B1-201ENST00000335508 KANK1Q14678 1352 aa9.44□□□□□ -0.9
SF3B1-201ENST00000335508 DNMBPQ6XZF7 1577 aa9.43□□□□□ -0.9
SF3B1-201ENST00000335508 SETD5Q9C0A6 1442 aa9.43□□□□□ -0.9
SF3B1-201ENST00000335508 KIAA0586Q9BVV6 1533 aa9.42□□□□□ -0.9
SF3B1-201ENST00000335508 HDGFP51858 240 aaKnown RBP9.42□□□□□ -0.9
SF3B1-201ENST00000335508 TOP2BQ02880 1626 aa9.42□□□□□ -0.9
SF3B1-201ENST00000335508 SPAG9O60271 1321 aaKnown RBP9.41□□□□□ -0.9
SF3B1-201ENST00000335508 CUX1P39880 1505 aa9.4□□□□□ -0.91
SF3B1-201ENST00000335508 PPP1R15AO75807 674 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-201ENST00000335508 STAC3Q96MF2 364 aa9.39□□□□□ -0.91
SF3B1-201ENST00000335508 CASKIN1Q8WXD9 1431 aa9.39□□□□□ -0.91
SF3B1-201ENST00000335508 MYOM3Q5VTT5 1437 aa9.38□□□□□ -0.91
SF3B1-201ENST00000335508 CYB5RLQ6IPT4 315 aa9.38□□□□□ -0.91
SF3B1-201ENST00000335508 ARID4BQ4LE39 1312 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-201ENST00000335508 SYNJ1O43426 1573 aa9.37□□□□□ -0.91
SF3B1-201ENST00000335508 NUP155O75694 1391 aa9.37□□□□□ -0.91
SF3B1-201ENST00000335508 CNGB1Q14028 1251 aaPredicted RBP9.36□□□□□ -0.91
SF3B1-201ENST00000335508 KDM2AQ9Y2K7 1162 aa9.36□□□□□ -0.91
SF3B1-201ENST00000335508 EFCAB5A4FU69 1503 aa9.36□□□□□ -0.91
SF3B1-201ENST00000335508 MAGI1Q96QZ7 1491 aaPredicted RBP9.36□□□□□ -0.91
SF3B1-201ENST00000335508 TRHP20396 242 aaPredicted RBP9.36□□□□□ -0.91
SF3B1-201ENST00000335508 PKD2Q13563 968 aa9.35□□□□□ -0.91
SF3B1-201ENST00000335508 KIF21BO75037 1637 aa9.35□□□□□ -0.91
SF3B1-201ENST00000335508 RGL3Q3MIN7 710 aa9.35□□□□□ -0.91
SF3B1-201ENST00000335508 KIF3BO15066 747 aa9.34□□□□□ -0.91
SF3B1-201ENST00000335508 DDX10Q13206 875 aaKnown RBP9.34□□□□□ -0.91
SF3B1-201ENST00000335508 GGT6Q6P531 493 aa9.34□□□□□ -0.91
SF3B1-201ENST00000335508 PRG4Q92954 1404 aaPredicted RBP9.33□□□□□ -0.92
SF3B1-201ENST00000335508 RAB3GAP2Q9H2M9 1393 aa9.33□□□□□ -0.92
SF3B1-201ENST00000335508 SYNJ2O15056 1496 aa9.33□□□□□ -0.92
SF3B1-201ENST00000335508 CARD11Q9BXL7 1154 aa9.33□□□□□ -0.92
SF3B1-201ENST00000335508 MPHOSPH9Q99550 1183 aa9.32□□□□□ -0.92
SF3B1-201ENST00000335508 ARAP1Q96P48 1450 aa9.31□□□□□ -0.92
SF3B1-201ENST00000335508 TROQ12816 1431 aaPredicted RBP9.31□□□□□ -0.92
SF3B1-201ENST00000335508 MIA2Q96PC5 1412 aa9.31□□□□□ -0.92
SF3B1-201ENST00000335508 FGD6Q6ZV73 1430 aa9.31□□□□□ -0.92
SF3B1-201ENST00000335508 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.3□□□□□ -0.92
SF3B1-201ENST00000335508 TMC1Q8TDI8 760 aa9.3□□□□□ -0.92
SF3B1-201ENST00000335508 FYCO1Q9BQS8 1478 aa9.3□□□□□ -0.92
SF3B1-201ENST00000335508 URB2Q14146 1524 aaKnown RBP9.29□□□□□ -0.92
SF3B1-201ENST00000335508 SIN3AQ96ST3 1273 aa9.29□□□□□ -0.92
SF3B1-201ENST00000335508 HNRNPMP52272 730 aaKnown RBP eCLIP9.29□□□□□ -0.923e-7■■■■□ 24.6
SF3B1-201ENST00000335508 SNAPC4Q5SXM2 1469 aa9.27□□□□□ -0.92
SF3B1-201ENST00000335508 DCAF11Q8TEB1 546 aa9.27□□□□□ -0.93
SF3B1-201ENST00000335508 LRRC9Q6ZRR7 1453 aa9.27□□□□□ -0.93
SF3B1-201ENST00000335508 WASHC2CQ9Y4E1 1318 aa9.27□□□□□ -0.93
SF3B1-201ENST00000335508 UACAQ9BZF9 1416 aa9.26□□□□□ -0.93
SF3B1-201ENST00000335508 PLEKHH2Q8IVE3 1493 aa9.26□□□□□ -0.93
SF3B1-201ENST00000335508 MRS2Q9HD23 443 aa9.26□□□□□ -0.93
SF3B1-201ENST00000335508 GRIN2AQ12879 1464 aa9.26□□□□□ -0.93
SF3B1-201ENST00000335508 KNSTRNQ9Y448 316 aa9.25□□□□□ -0.93
SF3B1-201ENST00000335508 PHLDB1Q86UU1 1377 aa9.24□□□□□ -0.93
SF3B1-201ENST00000335508 TMF1P82094 1093 aa9.24□□□□□ -0.93
SF3B1-201ENST00000335508 POGKQ9P215 609 aa9.24□□□□□ -0.93
SF3B1-201ENST00000335508 FAM69CQ0P6D2 419 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms