RNA–Protein interactions for RNA: ENST00000334654.4

CHGA-202, Transcript of chromogranin A, humanhuman

TSL 1 (best) BASIC

Gene CHGA, Length 1,474 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-202ENST00000334654 KIAA0586Q9BVV6 1533 aa28.64■■■□□ 2.18
CHGA-202ENST00000334654 LOC105371045A0A1W2PR82 267 aa28.62■■■□□ 2.17
CHGA-202ENST00000334654 CTTNBP2Q8WZ74 1663 aa28.62■■■□□ 2.17
CHGA-202ENST00000334654 UBTFP17480 764 aaKnown RBP28.58■■■□□ 2.17
CHGA-202ENST00000334654 IQGAP2Q13576 1575 aa28.55■■■□□ 2.16
CHGA-202ENST00000334654 SHROOM2Q13796 1616 aa28.51■■■□□ 2.15
CHGA-202ENST00000334654 TNIKQ9UKE5 1360 aa28.49■■■□□ 2.15
CHGA-202ENST00000334654 JPH4Q96JJ6 628 aa28.49■■■□□ 2.15
CHGA-202ENST00000334654 UGGT2Q9NYU1 1516 aa28.44■■■□□ 2.14
CHGA-202ENST00000334654 PRG4Q92954 1404 aaPredicted RBP28.38■■■□□ 2.13
CHGA-202ENST00000334654 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
CHGA-202ENST00000334654 DISP1Q96F81 1524 aa28.36■■■□□ 2.13
CHGA-202ENST00000334654 RANGAP1P46060 587 aaPredicted RBP28.32■■■□□ 2.12
CHGA-202ENST00000334654 DNAJC5Q9H3Z4 198 aa28.32■■■□□ 2.12
CHGA-202ENST00000334654 SAMD9Q5K651 1589 aa28.31■■■□□ 2.12
CHGA-202ENST00000334654 ARHGEF11O15085 1522 aa28.3■■■□□ 2.12
CHGA-202ENST00000334654 KIAA0556O60303 1618 aa28.28■■■□□ 2.12
CHGA-202ENST00000334654 CARMIL2Q6F5E8 1435 aa28.26■■■□□ 2.11
CHGA-202ENST00000334654 ARHGAP35Q9NRY4 1499 aa28.25■■■□□ 2.11
CHGA-202ENST00000334654 RIMBP3CA6NJZ7 1639 aa28.25■■■□□ 2.11
CHGA-202ENST00000334654 RIMBP3BA6NNM3 1639 aa28.25■■■□□ 2.11
CHGA-202ENST00000334654 RIMBP3Q9UFD9 1639 aa28.25■■■□□ 2.11
CHGA-202ENST00000334654 CEP162Q5TB80 1403 aa28.25■■■□□ 2.11
CHGA-202ENST00000334654 EFCAB5A4FU69 1503 aa28.24■■■□□ 2.11
CHGA-202ENST00000334654 CLIP1P30622 1438 aa28.22■■■□□ 2.11
CHGA-202ENST00000334654 P3H3Q8IVL6 736 aa28.21■■■□□ 2.11
CHGA-202ENST00000334654 FHOD3Q2V2M9 1422 aa28.15■■■□□ 2.1
CHGA-202ENST00000334654 ARAP1Q96P48 1450 aa28.13■■■□□ 2.09
CHGA-202ENST00000334654 PTPRGP23470 1445 aa28.1■■■□□ 2.09
CHGA-202ENST00000334654 TTBK1Q5TCY1 1321 aaPredicted RBP28.05■■■□□ 2.08
CHGA-202ENST00000334654 CYB5RLQ6IPT4 315 aa28■■■□□ 2.07
CHGA-202ENST00000334654 PLB1Q6P1J6 1458 aa27.97■■■□□ 2.07
CHGA-202ENST00000334654 ABCA8O94911 1581 aa27.96■■■□□ 2.07
CHGA-202ENST00000334654 FMN1Q68DA7 1419 aa27.96■■■□□ 2.07
CHGA-202ENST00000334654 UACAQ9BZF9 1416 aa27.94■■■□□ 2.06
CHGA-202ENST00000334654 RAPGEF6Q8TEU7 1601 aa27.9■■■□□ 2.06
CHGA-202ENST00000334654 ADCY10Q96PN6 1610 aa27.9■■■□□ 2.06
CHGA-202ENST00000334654 UHRF1BP1LA0JNW5 1464 aa27.89■■■□□ 2.06
CHGA-202ENST00000334654 ABCC2Q92887 1545 aa27.87■■■□□ 2.05
CHGA-202ENST00000334654 VPS8Q8N3P4 1428 aa27.87■■■□□ 2.05
CHGA-202ENST00000334654 PCF11O94913 1555 aaKnown RBP27.85■■■□□ 2.05
CHGA-202ENST00000334654 CASKIN1Q8WXD9 1431 aa27.84■■■□□ 2.05
CHGA-202ENST00000334654 NUP153P49790 1475 aaKnown RBP27.83■■■□□ 2.04
CHGA-202ENST00000334654 FYCO1Q9BQS8 1478 aa27.79■■■□□ 2.04
CHGA-202ENST00000334654 LRRIQ1Q96JM4 1722 aa27.77■■■□□ 2.04
CHGA-202ENST00000334654 HECW1Q76N89 1606 aa27.77■■■□□ 2.04
CHGA-202ENST00000334654 KDM5BQ9UGL1 1544 aa27.77■■■□□ 2.04
CHGA-202ENST00000334654 ATP10BO94823 1461 aa27.74■■■□□ 2.03
CHGA-202ENST00000334654 ATP1B4Q9UN42 357 aaPredicted RBP27.72■■■□□ 2.03
CHGA-202ENST00000334654 EPRSP07814 1512 aaKnown RBP27.72■■■□□ 2.03
CHGA-202ENST00000334654 ARID3CA6NKF2 412 aa27.71■■■□□ 2.03
CHGA-202ENST00000334654 ZCCHC11Q5TAX3 1644 aaKnown RBP27.71■■■□□ 2.03
CHGA-202ENST00000334654 CDK13Q14004 1512 aaKnown RBP27.69■■■□□ 2.02
CHGA-202ENST00000334654 NPM1P06748 294 aaKnown RBP eCLIP27.64■■■□□ 2.01
CHGA-202ENST00000334654 CCDC18Q5T9S5 1454 aa27.62■■■□□ 2.01
CHGA-202ENST00000334654 MAPKBP1O60336 1514 aa27.58■■■□□ 2.01
CHGA-202ENST00000334654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.57■■■□□ 2
CHGA-202ENST00000334654 HNRNPUL2Q1KMD3 747 aaKnown RBP27.57■■■□□ 2
CHGA-202ENST00000334654 MAP3K1Q13233 1512 aa27.56■■■□□ 2
CHGA-202ENST00000334654 TIAM1Q13009 1591 aa27.56■■■□□ 2
CHGA-202ENST00000334654 CFAP43Q8NDM7 1665 aa27.56■■■□□ 2
CHGA-202ENST00000334654 ASXL2Q76L83 1435 aa27.55■■■□□ 2
CHGA-202ENST00000334654 MAGI3Q5TCQ9 1506 aa27.53■■■□□ 2
CHGA-202ENST00000334654 PLEKHD1A6NEE1 506 aa27.5■■□□□ 1.99
CHGA-202ENST00000334654 WDR7Q9Y4E6 1490 aa27.49■■□□□ 1.99
CHGA-202ENST00000334654 KANK4Q5T7N3 995 aaPredicted RBP27.47■■□□□ 1.99
CHGA-202ENST00000334654 CDK11AQ9UQ88 783 aaPredicted RBP27.47■■□□□ 1.99
CHGA-202ENST00000334654 TROQ12816 1431 aaPredicted RBP27.45■■□□□ 1.98
CHGA-202ENST00000334654 APLP2Q06481 763 aa27.44■■□□□ 1.98
CHGA-202ENST00000334654 LRRC9Q6ZRR7 1453 aa27.44■■□□□ 1.98
CHGA-202ENST00000334654 MTUS2Q5JR59 1369 aa27.4■■□□□ 1.98
CHGA-202ENST00000334654 KCNH8Q96L42 1107 aa27.39■■□□□ 1.98
CHGA-202ENST00000334654 ABCC10Q5T3U5 1492 aa27.38■■□□□ 1.97
CHGA-202ENST00000334654 EHBP1L1Q8N3D4 1523 aa27.38■■□□□ 1.97
CHGA-202ENST00000334654 KIF14Q15058 1648 aa27.37■■□□□ 1.97
CHGA-202ENST00000334654 DIP2BQ9P265 1576 aa27.36■■□□□ 1.97
CHGA-202ENST00000334654 KIF13AQ9H1H9 1805 aa27.34■■□□□ 1.97
CHGA-202ENST00000334654 GLI2P10070 1586 aa27.32■■□□□ 1.96
CHGA-202ENST00000334654 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.31■■□□□ 1.96
CHGA-202ENST00000334654 ABCA9Q8IUA7 1624 aa27.29■■□□□ 1.96
CHGA-202ENST00000334654 PPARGC1BQ86YN6 1023 aaKnown RBP27.29■■□□□ 1.96
CHGA-202ENST00000334654 FAM69CQ0P6D2 419 aa27.28■■□□□ 1.96
CHGA-202ENST00000334654 TTC37Q6PGP7 1564 aa27.28■■□□□ 1.96
CHGA-202ENST00000334654 SUPT6HQ7KZ85 1726 aaKnown RBP27.28■■□□□ 1.96
CHGA-202ENST00000334654 NCOA2Q15596 1464 aa27.25■■□□□ 1.95
CHGA-202ENST00000334654 MAP3K4Q9Y6R4 1608 aa27.23■■□□□ 1.95
CHGA-202ENST00000334654 CDC42BPAQ5VT25 1732 aa27.18■■□□□ 1.94
CHGA-202ENST00000334654 CD109Q6YHK3 1445 aa27.18■■□□□ 1.94
CHGA-202ENST00000334654 TRHP20396 242 aaPredicted RBP27.18■■□□□ 1.94
CHGA-202ENST00000334654 GPATCH8Q9UKJ3 1502 aaKnown RBP27.17■■□□□ 1.94
CHGA-202ENST00000334654 PHLDB1Q86UU1 1377 aa27.15■■□□□ 1.94
CHGA-202ENST00000334654 MYO5CQ9NQX4 1742 aa27.15■■□□□ 1.94
CHGA-202ENST00000334654 PLCH2O75038 1416 aa27.15■■□□□ 1.94
CHGA-202ENST00000334654 PPRC1Q5VV67 1664 aaKnown RBP27.14■■□□□ 1.94
CHGA-202ENST00000334654 CDC42BPBQ9Y5S2 1711 aa27.14■■□□□ 1.94
CHGA-202ENST00000334654 CCNB3Q8WWL7 1395 aa27.14■■□□□ 1.94
CHGA-202ENST00000334654 PREX2Q70Z35 1606 aa27.12■■□□□ 1.93
CHGA-202ENST00000334654 TSPOAP1O95153 1857 aa27.12■■□□□ 1.93
CHGA-202ENST00000334654 ARAP3Q8WWN8 1544 aa27.09■■□□□ 1.93
CHGA-202ENST00000334654 MYOM3Q5VTT5 1437 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms