RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 NUP160Q12769 1436 aa26.95■■□□□ 1.91
SHOX-201ENST00000334060 CTTNBP2Q8WZ74 1663 aa26.87■■□□□ 1.89
SHOX-201ENST00000334060 CLASP1Q7Z460 1538 aa26.84■■□□□ 1.89
SHOX-201ENST00000334060 OSCARQ8IYS5 282 aa26.82■■□□□ 1.88
SHOX-201ENST00000334060 TNIKQ9UKE5 1360 aa26.82■■□□□ 1.88
SHOX-201ENST00000334060 KIAA0586Q9BVV6 1533 aa26.81■■□□□ 1.88
SHOX-201ENST00000334060 IQGAP2Q13576 1575 aa26.8■■□□□ 1.88
SHOX-201ENST00000334060 ERCC6L2Q5T890 1561 aa26.76■■□□□ 1.87
SHOX-201ENST00000334060 P3H3Q8IVL6 736 aa26.74■■□□□ 1.87
SHOX-201ENST00000334060 CEP162Q5TB80 1403 aa26.73■■□□□ 1.87
SHOX-201ENST00000334060 JPH4Q96JJ6 628 aa26.72■■□□□ 1.87
SHOX-201ENST00000334060 SHROOM2Q13796 1616 aa26.66■■□□□ 1.86
SHOX-201ENST00000334060 DISP1Q96F81 1524 aa26.66■■□□□ 1.86
SHOX-201ENST00000334060 ARHGAP35Q9NRY4 1499 aa26.66■■□□□ 1.86
SHOX-201ENST00000334060 CLIP1P30622 1438 aa26.65■■□□□ 1.86
SHOX-201ENST00000334060 PRG4Q92954 1404 aaPredicted RBP26.65■■□□□ 1.86
SHOX-201ENST00000334060 TTBK1Q5TCY1 1321 aaPredicted RBP26.64■■□□□ 1.86
SHOX-201ENST00000334060 UGGT2Q9NYU1 1516 aa26.64■■□□□ 1.86
SHOX-201ENST00000334060 FHOD3Q2V2M9 1422 aa26.62■■□□□ 1.85
SHOX-201ENST00000334060 SAMD9Q5K651 1589 aa26.6■■□□□ 1.85
SHOX-201ENST00000334060 ARAP1Q96P48 1450 aa26.58■■□□□ 1.85
SHOX-201ENST00000334060 KIAA0556O60303 1618 aa26.58■■□□□ 1.85
SHOX-201ENST00000334060 ARHGEF11O15085 1522 aa26.5■■□□□ 1.83
SHOX-201ENST00000334060 EFCAB5A4FU69 1503 aa26.46■■□□□ 1.83
SHOX-201ENST00000334060 RIMBP3CA6NJZ7 1639 aa26.44■■□□□ 1.82
SHOX-201ENST00000334060 RIMBP3BA6NNM3 1639 aa26.44■■□□□ 1.82
SHOX-201ENST00000334060 RIMBP3Q9UFD9 1639 aa26.44■■□□□ 1.82
SHOX-201ENST00000334060 CARMIL2Q6F5E8 1435 aa26.43■■□□□ 1.82
SHOX-201ENST00000334060 PLB1Q6P1J6 1458 aa26.37■■□□□ 1.81
SHOX-201ENST00000334060 ARID3CA6NKF2 412 aa26.36■■□□□ 1.81
SHOX-201ENST00000334060 PTPRGP23470 1445 aa26.35■■□□□ 1.81
SHOX-201ENST00000334060 PCF11O94913 1555 aaKnown RBP26.32■■□□□ 1.8
SHOX-201ENST00000334060 DNAJC5Q9H3Z4 198 aa26.3■■□□□ 1.8
SHOX-201ENST00000334060 VPS8Q8N3P4 1428 aa26.28■■□□□ 1.8
SHOX-201ENST00000334060 CYB5RLQ6IPT4 315 aa26.28■■□□□ 1.8
SHOX-201ENST00000334060 ATP1B4Q9UN42 357 aaPredicted RBP26.26■■□□□ 1.79
SHOX-201ENST00000334060 LRRIQ1Q96JM4 1722 aa26.23■■□□□ 1.79
SHOX-201ENST00000334060 ABCA8O94911 1581 aa26.23■■□□□ 1.79
SHOX-201ENST00000334060 FMN1Q68DA7 1419 aa26.22■■□□□ 1.79
SHOX-201ENST00000334060 RAPGEF6Q8TEU7 1601 aa26.2■■□□□ 1.79
SHOX-201ENST00000334060 NUP153P49790 1475 aaKnown RBP26.2■■□□□ 1.78
SHOX-201ENST00000334060 ADCY10Q96PN6 1610 aa26.19■■□□□ 1.78
SHOX-201ENST00000334060 UACAQ9BZF9 1416 aa26.18■■□□□ 1.78
SHOX-201ENST00000334060 PPARGC1BQ86YN6 1023 aaKnown RBP26.17■■□□□ 1.78
SHOX-201ENST00000334060 CDK13Q14004 1512 aaKnown RBP26.17■■□□□ 1.78
SHOX-201ENST00000334060 CASKIN1Q8WXD9 1431 aa26.17■■□□□ 1.78
SHOX-201ENST00000334060 ABCC2Q92887 1545 aa26.12■■□□□ 1.77
SHOX-201ENST00000334060 FYCO1Q9BQS8 1478 aa26.12■■□□□ 1.77
SHOX-201ENST00000334060 HECW1Q76N89 1606 aa26.08■■□□□ 1.77
SHOX-201ENST00000334060 EPRSP07814 1512 aaKnown RBP26.07■■□□□ 1.76
SHOX-201ENST00000334060 ATP10BO94823 1461 aa26.07■■□□□ 1.76
SHOX-201ENST00000334060 KANK4Q5T7N3 995 aaPredicted RBP26.05■■□□□ 1.76
SHOX-201ENST00000334060 MAGI3Q5TCQ9 1506 aa26.04■■□□□ 1.76
SHOX-201ENST00000334060 UHRF1BP1LA0JNW5 1464 aa26.03■■□□□ 1.76
SHOX-201ENST00000334060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.02■■□□□ 1.76
SHOX-201ENST00000334060 HNRNPUL2Q1KMD3 747 aaKnown RBP26.02■■□□□ 1.76
SHOX-201ENST00000334060 ZCCHC11Q5TAX3 1644 aaKnown RBP26.02■■□□□ 1.76
SHOX-201ENST00000334060 KDM5BQ9UGL1 1544 aa25.99■■□□□ 1.75
SHOX-201ENST00000334060 TIAM1Q13009 1591 aa25.98■■□□□ 1.75
SHOX-201ENST00000334060 CFAP43Q8NDM7 1665 aa25.96■■□□□ 1.75
SHOX-201ENST00000334060 CCDC18Q5T9S5 1454 aa25.9■■□□□ 1.74
SHOX-201ENST00000334060 LRRC9Q6ZRR7 1453 aa25.86■■□□□ 1.73
SHOX-201ENST00000334060 ASXL2Q76L83 1435 aa25.85■■□□□ 1.73
SHOX-201ENST00000334060 APLP2Q06481 763 aa25.85■■□□□ 1.73
SHOX-201ENST00000334060 KIF14Q15058 1648 aa25.84■■□□□ 1.73
SHOX-201ENST00000334060 KCNH8Q96L42 1107 aa25.83■■□□□ 1.73
SHOX-201ENST00000334060 MAP3K1Q13233 1512 aa25.81■■□□□ 1.72
SHOX-201ENST00000334060 MTUS2Q5JR59 1369 aa25.81■■□□□ 1.72
SHOX-201ENST00000334060 NPM1P06748 294 aaKnown RBP eCLIP25.8■■□□□ 1.72
SHOX-201ENST00000334060 TROQ12816 1431 aaPredicted RBP25.78■■□□□ 1.72
SHOX-201ENST00000334060 PLEKHD1A6NEE1 506 aa25.78■■□□□ 1.72
SHOX-201ENST00000334060 WDR7Q9Y4E6 1490 aa25.77■■□□□ 1.72
SHOX-201ENST00000334060 EHBP1L1Q8N3D4 1523 aa25.75■■□□□ 1.71
SHOX-201ENST00000334060 MAPKBP1O60336 1514 aa25.74■■□□□ 1.71
SHOX-201ENST00000334060 TTC37Q6PGP7 1564 aa25.71■■□□□ 1.71
SHOX-201ENST00000334060 PHLDB1Q86UU1 1377 aa25.7■■□□□ 1.7
SHOX-201ENST00000334060 NCOA2Q15596 1464 aa25.7■■□□□ 1.7
SHOX-201ENST00000334060 CDK11AQ9UQ88 783 aaPredicted RBP25.69■■□□□ 1.7
SHOX-201ENST00000334060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.69■■□□□ 1.7
SHOX-201ENST00000334060 ABCC10Q5T3U5 1492 aa25.66■■□□□ 1.7
SHOX-201ENST00000334060 SUPT6HQ7KZ85 1726 aaKnown RBP25.64■■□□□ 1.7
SHOX-201ENST00000334060 DIP2BQ9P265 1576 aa25.63■■□□□ 1.69
SHOX-201ENST00000334060 FAM69CQ0P6D2 419 aa25.6■■□□□ 1.69
SHOX-201ENST00000334060 KIF13AQ9H1H9 1805 aa25.58■■□□□ 1.69
SHOX-201ENST00000334060 GPATCH8Q9UKJ3 1502 aaKnown RBP25.56■■□□□ 1.68
SHOX-201ENST00000334060 CDC42BPAQ5VT25 1732 aa25.56■■□□□ 1.68
SHOX-201ENST00000334060 ABCA9Q8IUA7 1624 aa25.55■■□□□ 1.68
SHOX-201ENST00000334060 ZNF644Q9H582 1327 aaPredicted RBP25.54■■□□□ 1.68
SHOX-201ENST00000334060 CCNB3Q8WWL7 1395 aa25.53■■□□□ 1.68
SHOX-201ENST00000334060 CDC42BPBQ9Y5S2 1711 aa25.51■■□□□ 1.67
SHOX-201ENST00000334060 MYOM3Q5VTT5 1437 aa25.5■■□□□ 1.67
SHOX-201ENST00000334060 TRHP20396 242 aaPredicted RBP25.49■■□□□ 1.67
SHOX-201ENST00000334060 TSPOAP1O95153 1857 aa25.48■■□□□ 1.67
SHOX-201ENST00000334060 MAP3K4Q9Y6R4 1608 aa25.48■■□□□ 1.67
SHOX-201ENST00000334060 ZNF777Q9ULD5 760 aaPredicted RBP25.47■■□□□ 1.67
SHOX-201ENST00000334060 CD109Q6YHK3 1445 aa25.47■■□□□ 1.67
SHOX-201ENST00000334060 PREX2Q70Z35 1606 aa25.47■■□□□ 1.67
SHOX-201ENST00000334060 GLI2P10070 1586 aa25.47■■□□□ 1.67
SHOX-201ENST00000334060 MYO5CQ9NQX4 1742 aa25.47■■□□□ 1.67
SHOX-201ENST00000334060 FGD6Q6ZV73 1430 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms