RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ABCA5Q8WWZ7 1642 aa22.14■■□□□ 1.14
CLCNKA-201ENST00000331433 MAP3K1Q13233 1512 aa22.14■■□□□ 1.13
CLCNKA-201ENST00000331433 DIEXFQ68CQ4 756 aaKnown RBP22.14■■□□□ 1.13
CLCNKA-201ENST00000331433 PCF11O94913 1555 aaKnown RBP22.13■■□□□ 1.13
CLCNKA-201ENST00000331433 CTTNBP2Q8WZ74 1663 aa22.12■■□□□ 1.13
CLCNKA-201ENST00000331433 GAPVD1Q14C86 1478 aa22.12■■□□□ 1.13
CLCNKA-201ENST00000331433 LRRC9Q6ZRR7 1453 aa22.1■■□□□ 1.13
CLCNKA-201ENST00000331433 ATP1B4Q9UN42 357 aaPredicted RBP22.09■■□□□ 1.13
CLCNKA-201ENST00000331433 EFCAB5A4FU69 1503 aa22.08■■□□□ 1.13
CLCNKA-201ENST00000331433 ITGAEP38570 1179 aa22.08■■□□□ 1.13
CLCNKA-201ENST00000331433 DHX57Q6P158 1386 aaKnown RBP22.07■■□□□ 1.12
CLCNKA-201ENST00000331433 ZNF316A6NFI3 1004 aaPredicted RBP22.07■■□□□ 1.12
CLCNKA-201ENST00000331433 CFAP43Q8NDM7 1665 aa22.05■■□□□ 1.12
CLCNKA-201ENST00000331433 TARBP1Q13395 1621 aaKnown RBP22.03■■□□□ 1.12
CLCNKA-201ENST00000331433 PHLDB1Q86UU1 1377 aa22.03■■□□□ 1.12
CLCNKA-201ENST00000331433 FYCO1Q9BQS8 1478 aa22.01■■□□□ 1.11
CLCNKA-201ENST00000331433 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
CLCNKA-201ENST00000331433 CLSPNQ9HAW4 1339 aa21.98■■□□□ 1.11
CLCNKA-201ENST00000331433 AQRO60306 1485 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLCNKA-201ENST00000331433 FMN1Q68DA7 1419 aa21.95■■□□□ 1.1
CLCNKA-201ENST00000331433 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
CLCNKA-201ENST00000331433 SAMD9Q5K651 1589 aa21.93■■□□□ 1.1
CLCNKA-201ENST00000331433 FAM50AQ14320 339 aaKnown RBP21.92■■□□□ 1.1
CLCNKA-201ENST00000331433 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
CLCNKA-201ENST00000331433 PBRM1Q86U86 1689 aa21.9■■□□□ 1.1
CLCNKA-201ENST00000331433 RAB3GAP2Q9H2M9 1393 aa21.9■■□□□ 1.1
CLCNKA-201ENST00000331433 LRRIQ1Q96JM4 1722 aa21.83■■□□□ 1.08
CLCNKA-201ENST00000331433 SETD5Q9C0A6 1442 aa21.82■■□□□ 1.08
CLCNKA-201ENST00000331433 ADAMTS12P58397 1594 aa21.81■■□□□ 1.08
CLCNKA-201ENST00000331433 MTUS2Q5JR59 1369 aa21.81■■□□□ 1.08
CLCNKA-201ENST00000331433 GRIN2BQ13224 1484 aa21.8■■□□□ 1.08
CLCNKA-201ENST00000331433 ZNF608Q9ULD9 1512 aaPredicted RBP21.79■■□□□ 1.08
CLCNKA-201ENST00000331433 SCAF1Q9H7N4 1312 aaKnown RBP21.78■■□□□ 1.08
CLCNKA-201ENST00000331433 WDR62O43379 1518 aa21.76■■□□□ 1.07
CLCNKA-201ENST00000331433 MAPKBP1O60336 1514 aa21.76■■□□□ 1.07
CLCNKA-201ENST00000331433 IFT140Q96RY7 1462 aa21.76■■□□□ 1.07
CLCNKA-201ENST00000331433 IQGAP2Q13576 1575 aa21.75■■□□□ 1.07
CLCNKA-201ENST00000331433 FGD6Q6ZV73 1430 aa21.75■■□□□ 1.07
CLCNKA-201ENST00000331433 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLCNKA-201ENST00000331433 THOC2Q8NI27 1593 aaKnown RBP21.72■■□□□ 1.07
CLCNKA-201ENST00000331433 NEUROD1Q13562 356 aa21.72■■□□□ 1.07
CLCNKA-201ENST00000331433 MIER1Q8N108 512 aa21.71■■□□□ 1.07
CLCNKA-201ENST00000331433 ACIN1Q9UKV3 1341 aaKnown RBP21.7■■□□□ 1.06
CLCNKA-201ENST00000331433 NCOA2Q15596 1464 aa21.7■■□□□ 1.06
CLCNKA-201ENST00000331433 ERCC6Q03468 1493 aa21.67■■□□□ 1.06
CLCNKA-201ENST00000331433 EHBP1L1Q8N3D4 1523 aa21.66■■□□□ 1.06
CLCNKA-201ENST00000331433 MAGI3Q5TCQ9 1506 aa21.66■■□□□ 1.06
CLCNKA-201ENST00000331433 SUPT6HQ7KZ85 1726 aaKnown RBP21.65■■□□□ 1.06
CLCNKA-201ENST00000331433 MYOM3Q5VTT5 1437 aa21.65■■□□□ 1.06
CLCNKA-201ENST00000331433 CENPBP07199 599 aaPredicted RBP21.64■■□□□ 1.05
CLCNKA-201ENST00000331433 CCDC18Q5T9S5 1454 aa21.63■■□□□ 1.05
CLCNKA-201ENST00000331433 EIF4G3O43432 1585 aaKnown RBP21.63■■□□□ 1.05
CLCNKA-201ENST00000331433 HECW1Q76N89 1606 aa21.62■■□□□ 1.05
CLCNKA-201ENST00000331433 PTPRKQ15262 1439 aa21.62■■□□□ 1.05
CLCNKA-201ENST00000331433 UGGT2Q9NYU1 1516 aa21.6■■□□□ 1.05
CLCNKA-201ENST00000331433 ARID3CA6NKF2 412 aa21.6■■□□□ 1.05
CLCNKA-201ENST00000331433 SIN3AQ96ST3 1273 aa21.6■■□□□ 1.05
CLCNKA-201ENST00000331433 EPRSP07814 1512 aaKnown RBP21.59■■□□□ 1.05
CLCNKA-201ENST00000331433 YTHDC1Q96MU7 727 aaKnown RBP21.59■■□□□ 1.05
CLCNKA-201ENST00000331433 CDK13Q14004 1512 aaKnown RBP21.58■■□□□ 1.05
CLCNKA-201ENST00000331433 ARHGEF11O15085 1522 aa21.57■■□□□ 1.04
CLCNKA-201ENST00000331433 KIAA0586Q9BVV6 1533 aa21.57■■□□□ 1.04
CLCNKA-201ENST00000331433 GRIN2AQ12879 1464 aa21.57■■□□□ 1.04
CLCNKA-201ENST00000331433 PTPN23Q9H3S7 1636 aa21.55■■□□□ 1.04
CLCNKA-201ENST00000331433 HFM1A2PYH4 1435 aa21.54■■□□□ 1.04
CLCNKA-201ENST00000331433 DISP1Q96F81 1524 aa21.54■■□□□ 1.04
CLCNKA-201ENST00000331433 KIAA0556O60303 1618 aa21.53■■□□□ 1.04
CLCNKA-201ENST00000331433 NAIPQ13075 1403 aa21.49■■□□□ 1.03
CLCNKA-201ENST00000331433 MAGI1Q96QZ7 1491 aaPredicted RBP21.48■■□□□ 1.03
CLCNKA-201ENST00000331433 CHMP7Q8WUX9 453 aaPredicted RBP21.48■■□□□ 1.03
CLCNKA-201ENST00000331433 FBLN2P98095 1184 aa21.46■■□□□ 1.03
CLCNKA-201ENST00000331433 TCOF1Q13428 1488 aaKnown RBP21.45■■□□□ 1.03
CLCNKA-201ENST00000331433 UACAQ9BZF9 1416 aa21.44■■□□□ 1.02
CLCNKA-201ENST00000331433 CHIC2Q9UKJ5 165 aa21.44■■□□□ 1.02
CLCNKA-201ENST00000331433 GTF3C3Q9Y5Q9 886 aa21.44■■□□□ 1.02
CLCNKA-201ENST00000331433 SYNJ2O15056 1496 aa21.44■■□□□ 1.02
CLCNKA-201ENST00000331433 CEP170Q5SW79 1584 aa21.44■■□□□ 1.02
CLCNKA-201ENST00000331433 NUP153P49790 1475 aaKnown RBP21.43■■□□□ 1.02
CLCNKA-201ENST00000331433 RRP7BPQ9NSQ0 103 aa21.43■■□□□ 1.02
CLCNKA-201ENST00000331433 RAPGEF6Q8TEU7 1601 aa21.41■■□□□ 1.02
CLCNKA-201ENST00000331433 TIMELESSQ9UNS1 1208 aa21.4■■□□□ 1.02
CLCNKA-201ENST00000331433 MIA2Q96PC5 1412 aa21.39■■□□□ 1.01
CLCNKA-201ENST00000331433 PPP1R15AO75807 674 aaPredicted RBP21.36■■□□□ 1.01
CLCNKA-201ENST00000331433 GCC2Q8IWJ2 1684 aa21.34■■□□□ 1.01
CLCNKA-201ENST00000331433 PLB1Q6P1J6 1458 aa21.33■■□□□ 1.01
CLCNKA-201ENST00000331433 NUP160Q12769 1436 aa21.33■■□□□ 1
CLCNKA-201ENST00000331433 TONSLQ96HA7 1378 aa21.32■■□□□ 1
CLCNKA-201ENST00000331433 KDM6BO15054 1643 aa21.32■■□□□ 1
CLCNKA-201ENST00000331433 JPH4Q96JJ6 628 aa21.31■■□□□ 1
CLCNKA-201ENST00000331433 CDK11AQ9UQ88 783 aaPredicted RBP21.3■■□□□ 1
CLCNKA-201ENST00000331433 AKNAQ7Z591 1439 aa21.3■■□□□ 1
CLCNKA-201ENST00000331433 ZNF644Q9H582 1327 aaPredicted RBP21.29■■□□□ 1
CLCNKA-201ENST00000331433 PRG4Q92954 1404 aaPredicted RBP21.29■■□□□ 1
CLCNKA-201ENST00000331433 TRIM52Q96A61 297 aa21.28■■□□□ 1
CLCNKA-201ENST00000331433 CARMIL2Q6F5E8 1435 aa21.27■■□□□ 1
CLCNKA-201ENST00000331433 HIRIP3Q9BW71 556 aaPredicted RBP21.27■■□□□ 1
CLCNKA-201ENST00000331433 DAPK1P53355 1430 aa21.26■□□□□ 0.99
CLCNKA-201ENST00000331433 TROQ12816 1431 aaPredicted RBP21.25■□□□□ 0.99
CLCNKA-201ENST00000331433 DENND4BO75064 1496 aaPredicted RBP21.25■□□□□ 0.99
CLCNKA-201ENST00000331433 ABCC5O15440 1437 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms