RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CCNB3Q8WWL7 1395 aa18.93■□□□□ 0.62
CCDC88C-201ENST00000331194 MAPKBP1O60336 1514 aa18.92■□□□□ 0.62
CCDC88C-201ENST00000331194 ANP32CO43423 234 aa18.91■□□□□ 0.62
CCDC88C-201ENST00000331194 NESP48681 1621 aa18.87■□□□□ 0.61
CCDC88C-201ENST00000331194 CDK11AQ9UQ88 783 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-201ENST00000331194 FANCIQ9NVI1 1328 aa18.87■□□□□ 0.61
CCDC88C-201ENST00000331194 HMGXB3Q12766 1538 aa18.87■□□□□ 0.61
CCDC88C-201ENST00000331194 CUX2O14529 1486 aa18.85■□□□□ 0.61
CCDC88C-201ENST00000331194 CCER2I3L3R5 266 aa18.84■□□□□ 0.61
CCDC88C-201ENST00000331194 DEKP35659 375 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-201ENST00000331194 HNRNPUQ00839 825 aaKnown RBP eCLIP18.82■□□□□ 0.6
CCDC88C-201ENST00000331194 ANO8Q9HCE9 1232 aaPredicted RBP18.82■□□□□ 0.6
CCDC88C-201ENST00000331194 CADPSQ9ULU8 1353 aa18.79■□□□□ 0.6
CCDC88C-201ENST00000331194 FAM50AQ14320 339 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-201ENST00000331194 CFTRP13569 1480 aa18.78■□□□□ 0.6
CCDC88C-201ENST00000331194 NBR1Q14596 966 aa18.76■□□□□ 0.59
CCDC88C-201ENST00000331194 SETD5Q9C0A6 1442 aa18.75■□□□□ 0.59
CCDC88C-201ENST00000331194 CUX1P39880 1505 aa18.74■□□□□ 0.59
CCDC88C-201ENST00000331194 B4GALNT3Q6L9W6 998 aa18.72■□□□□ 0.59
CCDC88C-201ENST00000331194 PRXQ9BXM0 1461 aa18.71■□□□□ 0.59
CCDC88C-201ENST00000331194 PAK3O75914 559 aaPredicted RBP18.68■□□□□ 0.58
CCDC88C-201ENST00000331194 ARHGAP35Q9NRY4 1499 aa18.66■□□□□ 0.58
CCDC88C-201ENST00000331194 CCDC184Q52MB2 194 aa18.64■□□□□ 0.57
CCDC88C-201ENST00000331194 PHLDB1Q86UU1 1377 aa18.64■□□□□ 0.57
CCDC88C-201ENST00000331194 TOP2BQ02880 1626 aa18.63■□□□□ 0.57
CCDC88C-201ENST00000331194 ATP1B4Q9UN42 357 aaPredicted RBP18.63■□□□□ 0.57
CCDC88C-201ENST00000331194 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
CCDC88C-201ENST00000331194 ERICH3Q5RHP9 1530 aa18.62■□□□□ 0.57
CCDC88C-201ENST00000331194 PPP4R2Q9NY27 417 aa18.62■□□□□ 0.57
CCDC88C-201ENST00000331194 P3H3Q8IVL6 736 aa18.59■□□□□ 0.57
CCDC88C-201ENST00000331194 RAD54L2Q9Y4B4 1467 aa18.59■□□□□ 0.57
CCDC88C-201ENST00000331194 NOP58Q9Y2X3 529 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-201ENST00000331194 CCDC136Q96JN2 1154 aa18.56■□□□□ 0.56
CCDC88C-201ENST00000331194 TONSLQ96HA7 1378 aa18.55■□□□□ 0.56
CCDC88C-201ENST00000331194 FAM9BQ8IZU0 186 aa18.55■□□□□ 0.56
CCDC88C-201ENST00000331194 TIMELESSQ9UNS1 1208 aa18.55■□□□□ 0.56
CCDC88C-201ENST00000331194 FGD5Q6ZNL6 1462 aa18.55■□□□□ 0.56
CCDC88C-201ENST00000331194 SALL2Q9Y467 1007 aaPredicted RBP18.54■□□□□ 0.56
CCDC88C-201ENST00000331194 MYT1LQ9UL68 1186 aa18.54■□□□□ 0.56
CCDC88C-201ENST00000331194 KIF27Q86VH2 1401 aa18.52■□□□□ 0.56
CCDC88C-201ENST00000331194 RTN4Q9NQC3 1192 aaKnown RBP18.5■□□□□ 0.55
CCDC88C-201ENST00000331194 TDRD9Q8NDG6 1382 aaKnown RBP18.5■□□□□ 0.55
CCDC88C-201ENST00000331194 SENP3-EIF4A1A0A087X0R7 540 aa18.49■□□□□ 0.55
CCDC88C-201ENST00000331194 TIAM1Q13009 1591 aa18.49■□□□□ 0.55
CCDC88C-201ENST00000331194 LRRC9Q6ZRR7 1453 aa18.48■□□□□ 0.55
CCDC88C-201ENST00000331194 WASHC2AQ641Q2 1341 aa18.48■□□□□ 0.55
CCDC88C-201ENST00000331194 IL27Q8NEV9 243 aa18.47■□□□□ 0.55
CCDC88C-201ENST00000331194 BIVM-ERCC5R4GMW8 1640 aa18.47■□□□□ 0.55
CCDC88C-201ENST00000331194 IGF1RP08069 1367 aa18.45■□□□□ 0.54
CCDC88C-201ENST00000331194 CNGB1Q14028 1251 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-201ENST00000331194 HSPA5P11021 654 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-201ENST00000331194 ERICH6BQ5W0A0 696 aa18.44■□□□□ 0.54
CCDC88C-201ENST00000331194 MRS2Q9HD23 443 aa18.4■□□□□ 0.54
CCDC88C-201ENST00000331194 TOPBP1Q92547 1522 aa18.39■□□□□ 0.53
CCDC88C-201ENST00000331194 POLA1P09884 1462 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-201ENST00000331194 C11orf95C9JLR9 678 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-201ENST00000331194 CARMIL1Q5VZK9 1371 aa18.39■□□□□ 0.53
CCDC88C-201ENST00000331194 URB2Q14146 1524 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-201ENST00000331194 RTL5Q5HYW3 569 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-201ENST00000331194 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.36■□□□□ 0.53
CCDC88C-201ENST00000331194 IPO9Q96P70 1041 aaKnown RBP18.36■□□□□ 0.53
CCDC88C-201ENST00000331194 ZBTB47Q9UFB7 747 aaPredicted RBP18.34■□□□□ 0.53
CCDC88C-201ENST00000331194 PRKRIP1Q9H875 184 aaPredicted RBP18.34■□□□□ 0.53
CCDC88C-201ENST00000331194 AKNAQ7Z591 1439 aa18.34■□□□□ 0.53
CCDC88C-201ENST00000331194 ANP32AP39687 249 aaKnown RBP18.34■□□□□ 0.53
CCDC88C-201ENST00000331194 PDS5BQ9NTI5 1447 aa18.33■□□□□ 0.53
CCDC88C-201ENST00000331194 AQRO60306 1485 aaKnown RBP eCLIP18.32■□□□□ 0.522e-6■■■□□ 18.3
CCDC88C-201ENST00000331194 NPM2Q86SE8 214 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-201ENST00000331194 CCDC18Q5T9S5 1454 aa18.31■□□□□ 0.52
CCDC88C-201ENST00000331194 PTPRKQ15262 1439 aa18.31■□□□□ 0.52
CCDC88C-201ENST00000331194 ZBED9Q6R2W3 1325 aa18.31■□□□□ 0.52
CCDC88C-201ENST00000331194 MAP3K1Q13233 1512 aa18.3■□□□□ 0.52
CCDC88C-201ENST00000331194 FHAD1B1AJZ9 1412 aa18.3■□□□□ 0.52
CCDC88C-201ENST00000331194 ARID3CA6NKF2 412 aa18.3■□□□□ 0.52
CCDC88C-201ENST00000331194 LAS1LQ9Y4W2 734 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-201ENST00000331194 KDM5BQ9UGL1 1544 aa18.28■□□□□ 0.52
CCDC88C-201ENST00000331194 EIF4G2P78344 907 aaKnown RBP eCLIP18.28■□□□□ 0.52
CCDC88C-201ENST00000331194 KIF21AQ7Z4S6 1674 aa18.27■□□□□ 0.52
CCDC88C-201ENST00000331194 PCF11O94913 1555 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-201ENST00000331194 UBE2Q2Q8WVN8 375 aa18.26■□□□□ 0.51
CCDC88C-201ENST00000331194 PRDM2Q13029 1718 aa18.26■□□□□ 0.51
CCDC88C-201ENST00000331194 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
CCDC88C-201ENST00000331194 FHOD3Q2V2M9 1422 aa18.25■□□□□ 0.51
CCDC88C-201ENST00000331194 FBLN2P98095 1184 aa18.25■□□□□ 0.51
CCDC88C-201ENST00000331194 CNTLNQ9NXG0 1405 aa18.25■□□□□ 0.51
CCDC88C-201ENST00000331194 LAMC3Q9Y6N6 1575 aa18.25■□□□□ 0.51
CCDC88C-201ENST00000331194 UACAQ9BZF9 1416 aa18.25■□□□□ 0.51
CCDC88C-201ENST00000331194 FOXD1Q16676 465 aa18.24■□□□□ 0.51
CCDC88C-201ENST00000331194 RRP7BPQ9NSQ0 103 aa18.24■□□□□ 0.51
CCDC88C-201ENST00000331194 CHIC2Q9UKJ5 165 aa18.24■□□□□ 0.51
CCDC88C-201ENST00000331194 ERCC6Q03468 1493 aa18.21■□□□□ 0.5
CCDC88C-201ENST00000331194 FGD6Q6ZV73 1430 aa18.2■□□□□ 0.5
CCDC88C-201ENST00000331194 L3MBTL2Q969R5 705 aa18.19■□□□□ 0.5
CCDC88C-201ENST00000331194 NEFMP07197 916 aa18.19■□□□□ 0.5
CCDC88C-201ENST00000331194 CCDC7Q96M83 1385 aa18.19■□□□□ 0.5
CCDC88C-201ENST00000331194 POLR3GLQ9BT43 218 aa18.18■□□□□ 0.5
CCDC88C-201ENST00000331194 NAIPQ13075 1403 aa18.18■□□□□ 0.5
CCDC88C-201ENST00000331194 CFAP43Q8NDM7 1665 aa18.17■□□□□ 0.5
CCDC88C-201ENST00000331194 HFM1A2PYH4 1435 aa18.17■□□□□ 0.5
CCDC88C-201ENST00000331194 NCOA2Q15596 1464 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms