RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 CEP170Q5SW79 1584 aa16.49■□□□□ 0.23
VIPAS39-201ENST00000327028 NUP160Q12769 1436 aa16.48■□□□□ 0.23
VIPAS39-201ENST00000327028 FBLN2P98095 1184 aa16.47■□□□□ 0.23
VIPAS39-201ENST00000327028 IQGAP2Q13576 1575 aa16.46■□□□□ 0.23
VIPAS39-201ENST00000327028 KIAA0586Q9BVV6 1533 aa16.45■□□□□ 0.22
VIPAS39-201ENST00000327028 CLIP1P30622 1438 aa16.44■□□□□ 0.22
VIPAS39-201ENST00000327028 EFCAB5A4FU69 1503 aa16.39■□□□□ 0.21
VIPAS39-201ENST00000327028 UGGT2Q9NYU1 1516 aa16.38■□□□□ 0.21
VIPAS39-201ENST00000327028 SAMD9Q5K651 1589 aa16.37■□□□□ 0.21
VIPAS39-201ENST00000327028 ARHGAP35Q9NRY4 1499 aa16.37■□□□□ 0.21
VIPAS39-201ENST00000327028 CLASP1Q7Z460 1538 aa16.36■□□□□ 0.21
VIPAS39-201ENST00000327028 RANGAP1P46060 587 aaPredicted RBP16.35■□□□□ 0.21
VIPAS39-201ENST00000327028 ARAP1Q96P48 1450 aa16.34■□□□□ 0.21
VIPAS39-201ENST00000327028 SHROOM2Q13796 1616 aa16.32■□□□□ 0.2
VIPAS39-201ENST00000327028 KIAA0556O60303 1618 aa16.3■□□□□ 0.2
VIPAS39-201ENST00000327028 DISP1Q96F81 1524 aa16.29■□□□□ 0.2
VIPAS39-201ENST00000327028 FHOD3Q2V2M9 1422 aa16.27■□□□□ 0.19
VIPAS39-201ENST00000327028 VPS8Q8N3P4 1428 aa16.27■□□□□ 0.19
VIPAS39-201ENST00000327028 JPH4Q96JJ6 628 aa16.26■□□□□ 0.19
VIPAS39-201ENST00000327028 OSCARQ8IYS5 282 aa16.24■□□□□ 0.19
VIPAS39-201ENST00000327028 CARMIL2Q6F5E8 1435 aa16.24■□□□□ 0.19
VIPAS39-201ENST00000327028 PRG4Q92954 1404 aaPredicted RBP16.22■□□□□ 0.19
VIPAS39-201ENST00000327028 P3H3Q8IVL6 736 aa16.22■□□□□ 0.19
VIPAS39-201ENST00000327028 FMN1Q68DA7 1419 aa16.21■□□□□ 0.18
VIPAS39-201ENST00000327028 PCF11O94913 1555 aaKnown RBP16.18■□□□□ 0.18
VIPAS39-201ENST00000327028 ERCC6L2Q5T890 1561 aa16.16■□□□□ 0.18
VIPAS39-201ENST00000327028 FYCO1Q9BQS8 1478 aa16.15■□□□□ 0.18
VIPAS39-201ENST00000327028 CASKIN1Q8WXD9 1431 aa16.14■□□□□ 0.18
VIPAS39-201ENST00000327028 HECW1Q76N89 1606 aa16.11■□□□□ 0.17
VIPAS39-201ENST00000327028 RAPGEF6Q8TEU7 1601 aa16.1■□□□□ 0.17
VIPAS39-201ENST00000327028 PTPRGP23470 1445 aa16.09■□□□□ 0.17
VIPAS39-201ENST00000327028 ABCA8O94911 1581 aa16.08■□□□□ 0.16
VIPAS39-201ENST00000327028 CFAP43Q8NDM7 1665 aa16.08■□□□□ 0.16
VIPAS39-201ENST00000327028 MAP3K1Q13233 1512 aa16.06■□□□□ 0.16
VIPAS39-201ENST00000327028 LRRIQ1Q96JM4 1722 aa16.06■□□□□ 0.16
VIPAS39-201ENST00000327028 PLB1Q6P1J6 1458 aa16.06■□□□□ 0.16
VIPAS39-201ENST00000327028 TIAM1Q13009 1591 aa16.05■□□□□ 0.16
VIPAS39-201ENST00000327028 TTBK1Q5TCY1 1321 aaPredicted RBP16.05■□□□□ 0.16
VIPAS39-201ENST00000327028 CCDC18Q5T9S5 1454 aa16.04■□□□□ 0.16
VIPAS39-201ENST00000327028 ARHGEF11O15085 1522 aa16.04■□□□□ 0.16
VIPAS39-201ENST00000327028 NUP153P49790 1475 aaKnown RBP16.03■□□□□ 0.16
VIPAS39-201ENST00000327028 APLP2Q06481 763 aa16.03■□□□□ 0.16
VIPAS39-201ENST00000327028 UACAQ9BZF9 1416 aa16.01■□□□□ 0.15
VIPAS39-201ENST00000327028 EPRSP07814 1512 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-201ENST00000327028 ABCC2Q92887 1545 aa16■□□□□ 0.15
VIPAS39-201ENST00000327028 ATP1B4Q9UN42 357 aaPredicted RBP16■□□□□ 0.15
VIPAS39-201ENST00000327028 RIMBP3CA6NJZ7 1639 aa15.99■□□□□ 0.15
VIPAS39-201ENST00000327028 RIMBP3BA6NNM3 1639 aa15.99■□□□□ 0.15
VIPAS39-201ENST00000327028 RIMBP3Q9UFD9 1639 aa15.99■□□□□ 0.15
VIPAS39-201ENST00000327028 UHRF1BP1LA0JNW5 1464 aa15.99■□□□□ 0.15
VIPAS39-201ENST00000327028 CDK13Q14004 1512 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-201ENST00000327028 LRRC9Q6ZRR7 1453 aa15.95■□□□□ 0.14
VIPAS39-201ENST00000327028 ADCY10Q96PN6 1610 aa15.94■□□□□ 0.14
VIPAS39-201ENST00000327028 EHBP1L1Q8N3D4 1523 aa15.93■□□□□ 0.14
VIPAS39-201ENST00000327028 KANK4Q5T7N3 995 aaPredicted RBP15.92■□□□□ 0.14
VIPAS39-201ENST00000327028 ATP10BO94823 1461 aa15.92■□□□□ 0.14
VIPAS39-201ENST00000327028 PPARGC1BQ86YN6 1023 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-201ENST00000327028 MAGI3Q5TCQ9 1506 aa15.91■□□□□ 0.14
VIPAS39-201ENST00000327028 KDM5BQ9UGL1 1544 aa15.9■□□□□ 0.14
VIPAS39-201ENST00000327028 ARID3CA6NKF2 412 aa15.9■□□□□ 0.14
VIPAS39-201ENST00000327028 ZCCHC11Q5TAX3 1644 aaKnown RBP15.9■□□□□ 0.14
VIPAS39-201ENST00000327028 MTUS2Q5JR59 1369 aa15.89■□□□□ 0.13
VIPAS39-201ENST00000327028 SUPT6HQ7KZ85 1726 aaKnown RBP15.86■□□□□ 0.13
VIPAS39-201ENST00000327028 CDK11AQ9UQ88 783 aaPredicted RBP15.85■□□□□ 0.13
VIPAS39-201ENST00000327028 TROQ12816 1431 aaPredicted RBP15.85■□□□□ 0.13
VIPAS39-201ENST00000327028 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.84■□□□□ 0.13
VIPAS39-201ENST00000327028 HNRNPUL2Q1KMD3 747 aaKnown RBP15.84■□□□□ 0.13
VIPAS39-201ENST00000327028 NCOA2Q15596 1464 aa15.81■□□□□ 0.12
VIPAS39-201ENST00000327028 KIF14Q15058 1648 aa15.8■□□□□ 0.12
VIPAS39-201ENST00000327028 PLEKHD1A6NEE1 506 aa15.8■□□□□ 0.12
VIPAS39-201ENST00000327028 CYB5RLQ6IPT4 315 aa15.79■□□□□ 0.12
VIPAS39-201ENST00000327028 PHLDB1Q86UU1 1377 aa15.77■□□□□ 0.11
VIPAS39-201ENST00000327028 WDR7Q9Y4E6 1490 aa15.76■□□□□ 0.11
VIPAS39-201ENST00000327028 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
VIPAS39-201ENST00000327028 NPM1P06748 294 aaKnown RBP eCLIP15.75■□□□□ 0.11
VIPAS39-201ENST00000327028 ASXL2Q76L83 1435 aa15.74■□□□□ 0.11
VIPAS39-201ENST00000327028 RRBP1Q9P2E9 1410 aaKnown RBP15.74■□□□□ 0.11
VIPAS39-201ENST00000327028 MAPKBP1O60336 1514 aa15.74■□□□□ 0.11
VIPAS39-201ENST00000327028 MYOM3Q5VTT5 1437 aa15.73■□□□□ 0.11
VIPAS39-201ENST00000327028 ABCC10Q5T3U5 1492 aa15.73■□□□□ 0.11
VIPAS39-201ENST00000327028 ITSN2Q9NZM3 1697 aa15.72■□□□□ 0.11
VIPAS39-201ENST00000327028 TTC37Q6PGP7 1564 aa15.7■□□□□ 0.1
VIPAS39-201ENST00000327028 FGD6Q6ZV73 1430 aa15.7■□□□□ 0.1
VIPAS39-201ENST00000327028 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.7■□□□□ 0.1
VIPAS39-201ENST00000327028 DNAJC5Q9H3Z4 198 aa15.7■□□□□ 0.1
VIPAS39-201ENST00000327028 CCNB3Q8WWL7 1395 aa15.7■□□□□ 0.1
VIPAS39-201ENST00000327028 CDC42BPAQ5VT25 1732 aa15.69■□□□□ 0.1
VIPAS39-201ENST00000327028 MIA2Q96PC5 1412 aa15.68■□□□□ 0.1
VIPAS39-201ENST00000327028 GPATCH8Q9UKJ3 1502 aaKnown RBP15.68■□□□□ 0.1
VIPAS39-201ENST00000327028 PREX2Q70Z35 1606 aa15.67■□□□□ 0.1
VIPAS39-201ENST00000327028 ABCA9Q8IUA7 1624 aa15.67■□□□□ 0.1
VIPAS39-201ENST00000327028 MYO5CQ9NQX4 1742 aa15.66■□□□□ 0.1
VIPAS39-201ENST00000327028 PTPN23Q9H3S7 1636 aa15.66■□□□□ 0.1
VIPAS39-201ENST00000327028 TCOF1Q13428 1488 aaKnown RBP15.65■□□□□ 0.1
VIPAS39-201ENST00000327028 KCNH8Q96L42 1107 aa15.64■□□□□ 0.1
VIPAS39-201ENST00000327028 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.64■□□□□ 0.09
VIPAS39-201ENST00000327028 CDC42BPBQ9Y5S2 1711 aa15.63■□□□□ 0.09
VIPAS39-201ENST00000327028 PCGF6Q9BYE7 350 aa15.63■□□□□ 0.09
VIPAS39-201ENST00000327028 ARAP3Q8WWN8 1544 aa15.61■□□□□ 0.09
VIPAS39-201ENST00000327028 GLI2P10070 1586 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms