RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 CHMP7Q8WUX9 453 aaPredicted RBP20.26■□□□□ 0.83
DDX39A-202ENST00000324340 NUP160Q12769 1436 aa20.24■□□□□ 0.83
DDX39A-202ENST00000324340 KIAA0586Q9BVV6 1533 aa20.23■□□□□ 0.83
DDX39A-202ENST00000324340 IQGAP2Q13576 1575 aa20.23■□□□□ 0.83
DDX39A-202ENST00000324340 CEP170Q5SW79 1584 aa20.23■□□□□ 0.83
DDX39A-202ENST00000324340 CHD1O14646 1710 aa20.23■□□□□ 0.83
DDX39A-202ENST00000324340 ARHGAP35Q9NRY4 1499 aa20.22■□□□□ 0.83
DDX39A-202ENST00000324340 EFCAB5A4FU69 1503 aa20.21■□□□□ 0.83
DDX39A-202ENST00000324340 ARAP1Q96P48 1450 aa20.19■□□□□ 0.82
DDX39A-202ENST00000324340 SAMD9Q5K651 1589 aa20.18■□□□□ 0.82
DDX39A-202ENST00000324340 FBLN2P98095 1184 aa20.17■□□□□ 0.82
DDX39A-202ENST00000324340 UGGT2Q9NYU1 1516 aa20.16■□□□□ 0.82
DDX39A-202ENST00000324340 RANGAP1P46060 587 aaPredicted RBP20.15■□□□□ 0.82
DDX39A-202ENST00000324340 VPS8Q8N3P4 1428 aa20.14■□□□□ 0.82
DDX39A-202ENST00000324340 CLASP1Q7Z460 1538 aa20.04■□□□□ 0.8
DDX39A-202ENST00000324340 DISP1Q96F81 1524 aa20.04■□□□□ 0.8
DDX39A-202ENST00000324340 KIAA0556O60303 1618 aa20.04■□□□□ 0.8
DDX39A-202ENST00000324340 FHOD3Q2V2M9 1422 aa20.04■□□□□ 0.8
DDX39A-202ENST00000324340 SHROOM2Q13796 1616 aa20.03■□□□□ 0.8
DDX39A-202ENST00000324340 JPH4Q96JJ6 628 aa20■□□□□ 0.79
DDX39A-202ENST00000324340 FMN1Q68DA7 1419 aa19.99■□□□□ 0.79
DDX39A-202ENST00000324340 P3H3Q8IVL6 736 aa19.98■□□□□ 0.79
DDX39A-202ENST00000324340 CARMIL2Q6F5E8 1435 aa19.95■□□□□ 0.78
DDX39A-202ENST00000324340 PCF11O94913 1555 aaKnown RBP19.94■□□□□ 0.78
DDX39A-202ENST00000324340 CASKIN1Q8WXD9 1431 aa19.94■□□□□ 0.78
DDX39A-202ENST00000324340 HRCP23327 699 aa19.93■□□□□ 0.78
DDX39A-202ENST00000324340 FYCO1Q9BQS8 1478 aa19.93■□□□□ 0.78
DDX39A-202ENST00000324340 PRG4Q92954 1404 aaPredicted RBP19.9■□□□□ 0.78
DDX39A-202ENST00000324340 MAP3K1Q13233 1512 aa19.9■□□□□ 0.78
DDX39A-202ENST00000324340 PELP1Q8IZL8 1130 aaKnown RBP19.87■□□□□ 0.77
DDX39A-202ENST00000324340 OSCARQ8IYS5 282 aa19.86■□□□□ 0.77
DDX39A-202ENST00000324340 CFAP43Q8NDM7 1665 aa19.84■□□□□ 0.77
DDX39A-202ENST00000324340 APLP2Q06481 763 aa19.83■□□□□ 0.77
DDX39A-202ENST00000324340 TIAM1Q13009 1591 aa19.83■□□□□ 0.77
DDX39A-202ENST00000324340 HECW1Q76N89 1606 aa19.83■□□□□ 0.76
DDX39A-202ENST00000324340 ERCC6L2Q5T890 1561 aa19.82■□□□□ 0.76
DDX39A-202ENST00000324340 LRRIQ1Q96JM4 1722 aa19.81■□□□□ 0.76
DDX39A-202ENST00000324340 RAPGEF6Q8TEU7 1601 aa19.81■□□□□ 0.76
DDX39A-202ENST00000324340 ABCA8O94911 1581 aa19.77■□□□□ 0.76
DDX39A-202ENST00000324340 CCDC18Q5T9S5 1454 aa19.77■□□□□ 0.75
DDX39A-202ENST00000324340 PTPRGP23470 1445 aa19.76■□□□□ 0.75
DDX39A-202ENST00000324340 PLB1Q6P1J6 1458 aa19.75■□□□□ 0.75
DDX39A-202ENST00000324340 NUP153P49790 1475 aaKnown RBP19.74■□□□□ 0.75
DDX39A-202ENST00000324340 PPARGC1BQ86YN6 1023 aaKnown RBP19.74■□□□□ 0.75
DDX39A-202ENST00000324340 EPRSP07814 1512 aaKnown RBP19.74■□□□□ 0.75
DDX39A-202ENST00000324340 LRRC9Q6ZRR7 1453 aa19.73■□□□□ 0.75
DDX39A-202ENST00000324340 KANK4Q5T7N3 995 aaPredicted RBP19.72■□□□□ 0.75
DDX39A-202ENST00000324340 ATP1B4Q9UN42 357 aaPredicted RBP19.7■□□□□ 0.74
DDX39A-202ENST00000324340 TRIM26Q12899 539 aaPredicted RBP19.68■□□□□ 0.74
DDX39A-202ENST00000324340 UACAQ9BZF9 1416 aa19.67■□□□□ 0.74
DDX39A-202ENST00000324340 TTBK1Q5TCY1 1321 aaPredicted RBP19.67■□□□□ 0.74
DDX39A-202ENST00000324340 CDK13Q14004 1512 aaKnown RBP19.65■□□□□ 0.74
DDX39A-202ENST00000324340 UHRF1BP1LA0JNW5 1464 aa19.64■□□□□ 0.73
DDX39A-202ENST00000324340 EHBP1L1Q8N3D4 1523 aa19.64■□□□□ 0.73
DDX39A-202ENST00000324340 ABCC2Q92887 1545 aa19.64■□□□□ 0.73
DDX39A-202ENST00000324340 MAGI3Q5TCQ9 1506 aa19.63■□□□□ 0.73
DDX39A-202ENST00000324340 ATP10BO94823 1461 aa19.6■□□□□ 0.73
DDX39A-202ENST00000324340 MTUS2Q5JR59 1369 aa19.6■□□□□ 0.73
DDX39A-202ENST00000324340 ARHGEF11O15085 1522 aa19.58■□□□□ 0.72
DDX39A-202ENST00000324340 SUPT6HQ7KZ85 1726 aaKnown RBP19.57■□□□□ 0.72
DDX39A-202ENST00000324340 CDK11AQ9UQ88 783 aaPredicted RBP19.55■□□□□ 0.72
DDX39A-202ENST00000324340 KDM5BQ9UGL1 1544 aa19.54■□□□□ 0.72
DDX39A-202ENST00000324340 ADCY10Q96PN6 1610 aa19.53■□□□□ 0.72
DDX39A-202ENST00000324340 ARID3CA6NKF2 412 aa19.53■□□□□ 0.72
DDX39A-202ENST00000324340 PCGF6Q9BYE7 350 aa19.53■□□□□ 0.72
DDX39A-202ENST00000324340 TROQ12816 1431 aaPredicted RBP19.52■□□□□ 0.72
DDX39A-202ENST00000324340 RRBP1Q9P2E9 1410 aaKnown RBP19.52■□□□□ 0.72
DDX39A-202ENST00000324340 NCOA2Q15596 1464 aa19.52■□□□□ 0.71
DDX39A-202ENST00000324340 PHLDB1Q86UU1 1377 aa19.51■□□□□ 0.71
DDX39A-202ENST00000324340 RIMBP3CA6NJZ7 1639 aa19.5■□□□□ 0.71
DDX39A-202ENST00000324340 RIMBP3BA6NNM3 1639 aa19.5■□□□□ 0.71
DDX39A-202ENST00000324340 ZCCHC11Q5TAX3 1644 aaKnown RBP19.5■□□□□ 0.71
DDX39A-202ENST00000324340 RIMBP3Q9UFD9 1639 aa19.5■□□□□ 0.71
DDX39A-202ENST00000324340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.48■□□□□ 0.71
DDX39A-202ENST00000324340 HNRNPUL2Q1KMD3 747 aaKnown RBP19.48■□□□□ 0.71
DDX39A-202ENST00000324340 PLEKHD1A6NEE1 506 aa19.45■□□□□ 0.7
DDX39A-202ENST00000324340 MYOM3Q5VTT5 1437 aa19.44■□□□□ 0.7
DDX39A-202ENST00000324340 KIF14Q15058 1648 aa19.43■□□□□ 0.7
DDX39A-202ENST00000324340 CCNB3Q8WWL7 1395 aa19.43■□□□□ 0.7
DDX39A-202ENST00000324340 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
DDX39A-202ENST00000324340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.4■□□□□ 0.74e-9■□□□□ 10.2
DDX39A-202ENST00000324340 ABCC10Q5T3U5 1492 aa19.4■□□□□ 0.7
DDX39A-202ENST00000324340 MIA2Q96PC5 1412 aa19.38■□□□□ 0.69
DDX39A-202ENST00000324340 ITSN2Q9NZM3 1697 aa19.37■□□□□ 0.69
DDX39A-202ENST00000324340 MYT1Q01538 1121 aa19.35■□□□□ 0.69
DDX39A-202ENST00000324340 TCOF1Q13428 1488 aaKnown RBP19.34■□□□□ 0.69
DDX39A-202ENST00000324340 PTPN23Q9H3S7 1636 aa19.34■□□□□ 0.69
DDX39A-202ENST00000324340 GPATCH8Q9UKJ3 1502 aaKnown RBP19.34■□□□□ 0.69
DDX39A-202ENST00000324340 WDR7Q9Y4E6 1490 aa19.33■□□□□ 0.69
DDX39A-202ENST00000324340 CDC42BPAQ5VT25 1732 aa19.33■□□□□ 0.68
DDX39A-202ENST00000324340 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.32■□□□□ 0.684e-7■■□□□ 11.9
DDX39A-202ENST00000324340 ASXL2Q76L83 1435 aa19.3■□□□□ 0.68
DDX39A-202ENST00000324340 NPM1P06748 294 aaKnown RBP eCLIP19.3■□□□□ 0.68
DDX39A-202ENST00000324340 CYB5RLQ6IPT4 315 aa19.3■□□□□ 0.68
DDX39A-202ENST00000324340 TTC37Q6PGP7 1564 aa19.29■□□□□ 0.68
DDX39A-202ENST00000324340 PREX2Q70Z35 1606 aa19.28■□□□□ 0.68
DDX39A-202ENST00000324340 MAPKBP1O60336 1514 aa19.27■□□□□ 0.68
DDX39A-202ENST00000324340 MYO5CQ9NQX4 1742 aa19.25■□□□□ 0.67
DDX39A-202ENST00000324340 CDC42BPBQ9Y5S2 1711 aa19.25■□□□□ 0.67
DDX39A-202ENST00000324340 FAM50AQ14320 339 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms