RNA–Protein interactions for RNA: ENST00000322918.9

CD46-202, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,124 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-202ENST00000322918 CCER1Q8TC90 406 aaPredicted RBP13.9□□□□□ -0.18
CD46-202ENST00000322918 FHOD3Q2V2M9 1422 aa13.88□□□□□ -0.19
CD46-202ENST00000322918 PELP1Q8IZL8 1130 aaKnown RBP13.85□□□□□ -0.19
CD46-202ENST00000322918 TARBP1Q13395 1621 aaKnown RBP13.84□□□□□ -0.19
CD46-202ENST00000322918 CHMP7Q8WUX9 453 aaPredicted RBP13.83□□□□□ -0.2
CD46-202ENST00000322918 ABCA5Q8WWZ7 1642 aa13.81□□□□□ -0.2
CD46-202ENST00000322918 WDR97A6NE52 1622 aa13.8□□□□□ -0.2
CD46-202ENST00000322918 IFT140Q96RY7 1462 aa13.78□□□□□ -0.2
CD46-202ENST00000322918 WDR62O43379 1518 aa13.78□□□□□ -0.2
CD46-202ENST00000322918 GRIN2BQ13224 1484 aa13.77□□□□□ -0.21
CD46-202ENST00000322918 CUL7Q14999 1698 aa13.77□□□□□ -0.21
CD46-202ENST00000322918 SNAPC4Q5SXM2 1469 aa13.76□□□□□ -0.21
CD46-202ENST00000322918 FHAD1B1AJZ9 1412 aa13.74□□□□□ -0.21
CD46-202ENST00000322918 FAM50AQ14320 339 aaKnown RBP13.74□□□□□ -0.21
CD46-202ENST00000322918 THOC2Q8NI27 1593 aaKnown RBP13.72□□□□□ -0.21
CD46-202ENST00000322918 PBRM1Q86U86 1689 aa13.71□□□□□ -0.21
CD46-202ENST00000322918 EIF4G3O43432 1585 aaKnown RBP13.7□□□□□ -0.22
CD46-202ENST00000322918 PCF11O94913 1555 aaKnown RBP13.67□□□□□ -0.22
CD46-202ENST00000322918 CTTNBP2Q8WZ74 1663 aa13.67□□□□□ -0.22
CD46-202ENST00000322918 ADAMTS12P58397 1594 aa13.66□□□□□ -0.22
CD46-202ENST00000322918 ZEB1P37275 1124 aaPredicted RBP13.66□□□□□ -0.22
CD46-202ENST00000322918 MTUS2Q5JR59 1369 aa13.64□□□□□ -0.23
CD46-202ENST00000322918 FMN1Q68DA7 1419 aa13.63□□□□□ -0.23
CD46-202ENST00000322918 GRIN2AQ12879 1464 aa13.62□□□□□ -0.23
CD46-202ENST00000322918 PHLDB1Q86UU1 1377 aa13.62□□□□□ -0.23
CD46-202ENST00000322918 TIAM1Q13009 1591 aa13.61□□□□□ -0.23
CD46-202ENST00000322918 IQGAP2Q13576 1575 aa13.61□□□□□ -0.23
CD46-202ENST00000322918 LRRC9Q6ZRR7 1453 aa13.61□□□□□ -0.23
CD46-202ENST00000322918 CCNB3Q8WWL7 1395 aa13.61□□□□□ -0.23
CD46-202ENST00000322918 JPH4Q96JJ6 628 aa13.61□□□□□ -0.23
CD46-202ENST00000322918 EFCAB5A4FU69 1503 aa13.6□□□□□ -0.23
CD46-202ENST00000322918 CASKIN1Q8WXD9 1431 aa13.59□□□□□ -0.23
CD46-202ENST00000322918 SYNJ2O15056 1496 aa13.57□□□□□ -0.24
CD46-202ENST00000322918 FYCO1Q9BQS8 1478 aa13.56□□□□□ -0.24
CD46-202ENST00000322918 MAGI1Q96QZ7 1491 aaPredicted RBP13.55□□□□□ -0.24
CD46-202ENST00000322918 KIAA0586Q9BVV6 1533 aa13.55□□□□□ -0.24
CD46-202ENST00000322918 CHIC2Q9UKJ5 165 aa13.53□□□□□ -0.24
CD46-202ENST00000322918 CDK13Q14004 1512 aaKnown RBP13.53□□□□□ -0.24
CD46-202ENST00000322918 SAMD9Q5K651 1589 aa13.53□□□□□ -0.24
CD46-202ENST00000322918 CEP170Q5SW79 1584 aa13.52□□□□□ -0.24
CD46-202ENST00000322918 RRBP1Q9P2E9 1410 aaKnown RBP13.51□□□□□ -0.25
CD46-202ENST00000322918 DISP1Q96F81 1524 aa13.5□□□□□ -0.25
CD46-202ENST00000322918 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
CD46-202ENST00000322918 ZNF777Q9ULD5 760 aaPredicted RBP13.48□□□□□ -0.25
CD46-202ENST00000322918 PLB1Q6P1J6 1458 aa13.48□□□□□ -0.25
CD46-202ENST00000322918 UGGT2Q9NYU1 1516 aa13.45□□□□□ -0.26
CD46-202ENST00000322918 CARMIL2Q6F5E8 1435 aa13.45□□□□□ -0.26
CD46-202ENST00000322918 RRP7BPQ9NSQ0 103 aa13.45□□□□□ -0.26
CD46-202ENST00000322918 NCOA2Q15596 1464 aa13.45□□□□□ -0.26
CD46-202ENST00000322918 EPRSP07814 1512 aaKnown RBP13.45□□□□□ -0.26
CD46-202ENST00000322918 PRG4Q92954 1404 aaPredicted RBP13.45□□□□□ -0.26
CD46-202ENST00000322918 CFAP43Q8NDM7 1665 aa13.45□□□□□ -0.26
CD46-202ENST00000322918 LRRIQ1Q96JM4 1722 aa13.44□□□□□ -0.26
CD46-202ENST00000322918 MAP3K1Q13233 1512 aa13.44□□□□□ -0.26
CD46-202ENST00000322918 KIAA0556O60303 1618 aa13.44□□□□□ -0.26
CD46-202ENST00000322918 MAGI3Q5TCQ9 1506 aa13.44□□□□□ -0.26
CD46-202ENST00000322918 RAB3GAP2Q9H2M9 1393 aa13.44□□□□□ -0.26
CD46-202ENST00000322918 ZNF644Q9H582 1327 aaPredicted RBP13.43□□□□□ -0.26
CD46-202ENST00000322918 NUP160Q12769 1436 aa13.43□□□□□ -0.26
CD46-202ENST00000322918 NEUROD1Q13562 356 aa13.43□□□□□ -0.26
CD46-202ENST00000322918 FGD6Q6ZV73 1430 aa13.42□□□□□ -0.26
CD46-202ENST00000322918 CDK11AQ9UQ88 783 aaPredicted RBP13.42□□□□□ -0.26
CD46-202ENST00000322918 DHX57Q6P158 1386 aaKnown RBP13.4□□□□□ -0.26
CD46-202ENST00000322918 NUP153P49790 1475 aaKnown RBP13.4□□□□□ -0.26
CD46-202ENST00000322918 HECW1Q76N89 1606 aa13.39□□□□□ -0.27
CD46-202ENST00000322918 PTPRGP23470 1445 aa13.39□□□□□ -0.27
CD46-202ENST00000322918 KCNH8Q96L42 1107 aa13.39□□□□□ -0.27
CD46-202ENST00000322918 CHD1O14646 1710 aa13.38□□□□□ -0.27
CD46-202ENST00000322918 CCDC18Q5T9S5 1454 aa13.38□□□□□ -0.27
CD46-202ENST00000322918 MYOM3Q5VTT5 1437 aa13.38□□□□□ -0.27
CD46-202ENST00000322918 PLEKHD1A6NEE1 506 aa13.37□□□□□ -0.27
CD46-202ENST00000322918 SIN3AQ96ST3 1273 aa13.37□□□□□ -0.27
CD46-202ENST00000322918 SETD5Q9C0A6 1442 aa13.36□□□□□ -0.27
CD46-202ENST00000322918 TRIM52Q96A61 297 aa13.35□□□□□ -0.27
CD46-202ENST00000322918 CFDP1Q9UEE9 299 aaPredicted RBP13.35□□□□□ -0.27
CD46-202ENST00000322918 PTPRKQ15262 1439 aa13.35□□□□□ -0.27
CD46-202ENST00000322918 EHBP1L1Q8N3D4 1523 aa13.35□□□□□ -0.27
CD46-202ENST00000322918 RAPGEF6Q8TEU7 1601 aa13.34□□□□□ -0.27
CD46-202ENST00000322918 SUPT6HQ7KZ85 1726 aaKnown RBP13.33□□□□□ -0.28
CD46-202ENST00000322918 ERCC6L2Q5T890 1561 aa13.33□□□□□ -0.28
CD46-202ENST00000322918 MYT1Q01538 1121 aa13.33□□□□□ -0.28
CD46-202ENST00000322918 FOXD1Q16676 465 aa13.28□□□□□ -0.28
CD46-202ENST00000322918 ATP10BO94823 1461 aa13.27□□□□□ -0.28
CD46-202ENST00000322918 PTPN23Q9H3S7 1636 aa13.27□□□□□ -0.28
CD46-202ENST00000322918 TROQ12816 1431 aaPredicted RBP13.26□□□□□ -0.29
CD46-202ENST00000322918 DIEXFQ68CQ4 756 aaKnown RBP13.26□□□□□ -0.29
CD46-202ENST00000322918 HNRNPMP52272 730 aaKnown RBP eCLIP13.25□□□□□ -0.299e-8■■■■■ 28.4
CD46-202ENST00000322918 ZNF316A6NFI3 1004 aaPredicted RBP13.25□□□□□ -0.29
CD46-202ENST00000322918 KIF14Q15058 1648 aa13.24□□□□□ -0.29
CD46-202ENST00000322918 ARHGEF11O15085 1522 aa13.23□□□□□ -0.29
CD46-202ENST00000322918 OSCARQ8IYS5 282 aa13.23□□□□□ -0.29
CD46-202ENST00000322918 HIRIP3Q9BW71 556 aaPredicted RBP13.22□□□□□ -0.29
CD46-202ENST00000322918 UACAQ9BZF9 1416 aa13.22□□□□□ -0.29
CD46-202ENST00000322918 NAIPQ13075 1403 aa13.21□□□□□ -0.29
CD46-202ENST00000322918 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.2□□□□□ -0.33e-6■■□□□ 12.8
CD46-202ENST00000322918 ABCA8O94911 1581 aa13.2□□□□□ -0.3
CD46-202ENST00000322918 GPATCH8Q9UKJ3 1502 aaKnown RBP13.19□□□□□ -0.3
CD46-202ENST00000322918 HFM1A2PYH4 1435 aa13.18□□□□□ -0.3
CD46-202ENST00000322918 MIA2Q96PC5 1412 aa13.18□□□□□ -0.3
CD46-202ENST00000322918 MAPKBP1O60336 1514 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms