RNA–Protein interactions for RNA: ENST00000321105.9

TOP3A-201, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,056 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-201ENST00000321105 VPS8Q8N3P4 1428 aa15.44■□□□□ 0.06
TOP3A-201ENST00000321105 CCNB3Q8WWL7 1395 aa15.38■□□□□ 0.05
TOP3A-201ENST00000321105 ERICH6Q7L0X2 663 aa15.38■□□□□ 0.05
TOP3A-201ENST00000321105 FOXD1Q16676 465 aa15.37■□□□□ 0.05
TOP3A-201ENST00000321105 EIF4G1Q04637 1599 aaKnown RBP15.36■□□□□ 0.05
TOP3A-201ENST00000321105 SALL2Q9Y467 1007 aaPredicted RBP15.36■□□□□ 0.05
TOP3A-201ENST00000321105 ERCC6Q03468 1493 aa15.35■□□□□ 0.05
TOP3A-201ENST00000321105 FAM9BQ8IZU0 186 aa15.35■□□□□ 0.05
TOP3A-201ENST00000321105 TSPY4P0CV99 314 aa15.34■□□□□ 0.05
TOP3A-201ENST00000321105 TSPY10P0CW01 314 aa15.34■□□□□ 0.05
TOP3A-201ENST00000321105 CHGAP10645 457 aaKnown RBP15.33■□□□□ 0.04
TOP3A-201ENST00000321105 CFDP1Q9UEE9 299 aaPredicted RBP15.33■□□□□ 0.04
TOP3A-201ENST00000321105 RGL3Q3MIN7 710 aa15.33■□□□□ 0.04
TOP3A-201ENST00000321105 FHOD3Q2V2M9 1422 aa15.33■□□□□ 0.04
TOP3A-201ENST00000321105 PLEKHD1A6NEE1 506 aa15.31■□□□□ 0.04
TOP3A-201ENST00000321105 HNRNPUQ00839 825 aaKnown RBP eCLIP15.3■□□□□ 0.04
TOP3A-201ENST00000321105 PLPPR3Q6T4P5 718 aa15.3■□□□□ 0.04
TOP3A-201ENST00000321105 RAD54L2Q9Y4B4 1467 aa15.28■□□□□ 0.04
TOP3A-201ENST00000321105 IRX6P78412 446 aaPredicted RBP15.26■□□□□ 0.03
TOP3A-201ENST00000321105 FKBP8Q14318 412 aa15.26■□□□□ 0.03
TOP3A-201ENST00000321105 IGF1RP08069 1367 aa15.26■□□□□ 0.03
TOP3A-201ENST00000321105 FANCD2Q9BXW9 1451 aa15.25■□□□□ 0.03
TOP3A-201ENST00000321105 NESP48681 1621 aa15.23■□□□□ 0.03
TOP3A-201ENST00000321105 SYNJ1O43426 1573 aa15.22■□□□□ 0.03
TOP3A-201ENST00000321105 PDS5BQ9NTI5 1447 aa15.22■□□□□ 0.03
TOP3A-201ENST00000321105 RAB3GAP2Q9H2M9 1393 aa15.22■□□□□ 0.03
TOP3A-201ENST00000321105 BICRAQ9NZM4 1560 aa15.2■□□□□ 0.02
TOP3A-201ENST00000321105 FHAD1B1AJZ9 1412 aa15.2■□□□□ 0.02
TOP3A-201ENST00000321105 NCAPD3P42695 1498 aa15.2■□□□□ 0.02
TOP3A-201ENST00000321105 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
TOP3A-201ENST00000321105 NPM1P06748 294 aaKnown RBP eCLIP15.18■□□□□ 0.02
TOP3A-201ENST00000321105 EIF4G2P78344 907 aaKnown RBP eCLIP15.17■□□□□ 0.02
TOP3A-201ENST00000321105 MRS2Q9HD23 443 aa15.16■□□□□ 0.02
TOP3A-201ENST00000321105 BCL11AQ9H165 835 aa15.12■□□□□ 0.01
TOP3A-201ENST00000321105 SETD5Q9C0A6 1442 aa15.12■□□□□ 0.01
TOP3A-201ENST00000321105 AQRO60306 1485 aaKnown RBP eCLIP15.09■□□□□ 0.011e-6■■■■□ 26.1
TOP3A-201ENST00000321105 JPH4Q96JJ6 628 aa15.08■□□□□ 0.01
TOP3A-201ENST00000321105 ARHGAP35Q9NRY4 1499 aa15.08■□□□□ 0.01
TOP3A-201ENST00000321105 ARAP1Q96P48 1450 aa15.08■□□□□ 0
TOP3A-201ENST00000321105 TMC1Q8TDI8 760 aa15.08■□□□□ 0
TOP3A-201ENST00000321105 DHX57Q6P158 1386 aaKnown RBP15.07■□□□□ 0
TOP3A-201ENST00000321105 CFTRP13569 1480 aa15.06■□□□□ 0
TOP3A-201ENST00000321105 KIF21BO75037 1637 aa15.06■□□□□ 0
TOP3A-201ENST00000321105 ZNF644Q9H582 1327 aaPredicted RBP15.05■□□□□ 0
TOP3A-201ENST00000321105 HNRNPMP52272 730 aaKnown RBP eCLIP15.04■□□□□ -0
TOP3A-201ENST00000321105 PKD2Q13563 968 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 DCAF11Q8TEB1 546 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 CARD11Q9BXL7 1154 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 CUX1P39880 1505 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 MPHOSPH9Q99550 1183 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 FMN1Q68DA7 1419 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 PHLDB1Q86UU1 1377 aa15.03■□□□□ -0
TOP3A-201ENST00000321105 STAG3Q9UJ98 1225 aa15.02■□□□□ -0
TOP3A-201ENST00000321105 CLSPNQ9HAW4 1339 aa15.02■□□□□ -0
TOP3A-201ENST00000321105 PPP1R15AO75807 674 aaPredicted RBP15□□□□□ -0.01
TOP3A-201ENST00000321105 HSPA5P11021 654 aaKnown RBP15□□□□□ -0.01
TOP3A-201ENST00000321105 L3MBTL2Q969R5 705 aa14.99□□□□□ -0.01
TOP3A-201ENST00000321105 GAPVD1Q14C86 1478 aa14.99□□□□□ -0.01
TOP3A-201ENST00000321105 CC2D2AQ9P2K1 1620 aa14.98□□□□□ -0.01
TOP3A-201ENST00000321105 SUPT16HQ9Y5B9 1047 aaKnown RBP14.97□□□□□ -0.01
TOP3A-201ENST00000321105 UNC13AQ9UPW8 1703 aa14.95□□□□□ -0.02
TOP3A-201ENST00000321105 PRXQ9BXM0 1461 aa14.95□□□□□ -0.02
TOP3A-201ENST00000321105 ESF1Q9H501 851 aaKnown RBP14.93□□□□□ -0.02
TOP3A-201ENST00000321105 PLEKHG5O94827 1062 aa14.92□□□□□ -0.02
TOP3A-201ENST00000321105 NUP155O75694 1391 aa14.91□□□□□ -0.02
TOP3A-201ENST00000321105 SLC24A1O60721 1099 aa14.91□□□□□ -0.02
TOP3A-201ENST00000321105 POLA1P09884 1462 aaPredicted RBP14.9□□□□□ -0.02
TOP3A-201ENST00000321105 CC2D1BQ5T0F9 858 aaKnown RBP14.9□□□□□ -0.02
TOP3A-201ENST00000321105 GGT6Q6P531 493 aa14.9□□□□□ -0.02
TOP3A-201ENST00000321105 DAXXQ9UER7 740 aaPredicted RBP14.89□□□□□ -0.03
TOP3A-201ENST00000321105 NPM2Q86SE8 214 aaKnown RBP14.89□□□□□ -0.03
TOP3A-201ENST00000321105 TNNT2P45379 298 aaPredicted RBP14.89□□□□□ -0.03
TOP3A-201ENST00000321105 TOP2BQ02880 1626 aa14.88□□□□□ -0.03
TOP3A-201ENST00000321105 CANXP27824 592 aaKnown RBP14.87□□□□□ -0.03
TOP3A-201ENST00000321105 CARMIL2Q6F5E8 1435 aa14.87□□□□□ -0.03
TOP3A-201ENST00000321105 MLECQ14165 292 aa14.87□□□□□ -0.03
TOP3A-201ENST00000321105 SAFB2Q14151 953 aaKnown RBP eCLIP14.86□□□□□ -0.03
TOP3A-201ENST00000321105 TOPBP1Q92547 1522 aa14.86□□□□□ -0.03
TOP3A-201ENST00000321105 LRRC9Q6ZRR7 1453 aa14.83□□□□□ -0.04
TOP3A-201ENST00000321105 NUTM2DQ5VT03 806 aaPredicted RBP14.83□□□□□ -0.04
TOP3A-201ENST00000321105 HMGXB3Q12766 1538 aa14.82□□□□□ -0.04
TOP3A-201ENST00000321105 NEUROD2Q15784 382 aa14.82□□□□□ -0.04
TOP3A-201ENST00000321105 CCDC136Q96JN2 1154 aa14.82□□□□□ -0.04
TOP3A-201ENST00000321105 TIMELESSQ9UNS1 1208 aa14.8□□□□□ -0.04
TOP3A-201ENST00000321105 WDR43Q15061 677 aaKnown RBP eCLIP14.8□□□□□ -0.04
TOP3A-201ENST00000321105 KIF3BO15066 747 aa14.79□□□□□ -0.04
TOP3A-201ENST00000321105 FGD6Q6ZV73 1430 aa14.79□□□□□ -0.04
TOP3A-201ENST00000321105 ARID4BQ4LE39 1312 aaPredicted RBP14.77□□□□□ -0.04
TOP3A-201ENST00000321105 PTPRGP23470 1445 aa14.77□□□□□ -0.04
TOP3A-201ENST00000321105 EFCAB2Q5VUJ9 269 aa14.77□□□□□ -0.05
TOP3A-201ENST00000321105 PPM1GO15355 546 aaPredicted RBP14.76□□□□□ -0.05
TOP3A-201ENST00000321105 CCDC18Q5T9S5 1454 aa14.76□□□□□ -0.05
TOP3A-201ENST00000321105 B4GALNT3Q6L9W6 998 aa14.76□□□□□ -0.05
TOP3A-201ENST00000321105 KNSTRNQ9Y448 316 aa14.75□□□□□ -0.05
TOP3A-201ENST00000321105 ANKRD30AQ9BXX3 1397 aa14.75□□□□□ -0.05
TOP3A-201ENST00000321105 ERICH3Q5RHP9 1530 aa14.75□□□□□ -0.05
TOP3A-201ENST00000321105 ST20-MTHFSA0A0A6YYL1 179 aa14.74□□□□□ -0.05
TOP3A-201ENST00000321105 STK26Q9P289 416 aa14.73□□□□□ -0.05
TOP3A-201ENST00000321105 NCOA2Q15596 1464 aa14.72□□□□□ -0.05
TOP3A-201ENST00000321105 CYB5RLQ6IPT4 315 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms