RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 ERCC6Q03468 1493 aa11.48□□□□□ -0.57
TRIM55-202ENST00000315962 ABCA10Q8WWZ4 1543 aa11.48□□□□□ -0.57
TRIM55-202ENST00000315962 GAPVD1Q14C86 1478 aa11.46□□□□□ -0.58
TRIM55-202ENST00000315962 FHOD3Q2V2M9 1422 aa11.45□□□□□ -0.58
TRIM55-202ENST00000315962 ZNF608Q9ULD9 1512 aaPredicted RBP11.44□□□□□ -0.58
TRIM55-202ENST00000315962 YTHDC1Q96MU7 727 aaKnown RBP11.4□□□□□ -0.58
TRIM55-202ENST00000315962 GTF3C3Q9Y5Q9 886 aa11.4□□□□□ -0.58
TRIM55-202ENST00000315962 ACIN1Q9UKV3 1341 aaKnown RBP11.39□□□□□ -0.59
TRIM55-202ENST00000315962 MRC2Q9UBG0 1479 aa11.39□□□□□ -0.59
TRIM55-202ENST00000315962 FAM50AQ14320 339 aaKnown RBP11.39□□□□□ -0.59
TRIM55-202ENST00000315962 DIEXFQ68CQ4 756 aaKnown RBP11.38□□□□□ -0.59
TRIM55-202ENST00000315962 CHMP7Q8WUX9 453 aaPredicted RBP11.36□□□□□ -0.59
TRIM55-202ENST00000315962 TARBP1Q13395 1621 aaKnown RBP11.32□□□□□ -0.6
TRIM55-202ENST00000315962 ABCA5Q8WWZ7 1642 aa11.3□□□□□ -0.6
TRIM55-202ENST00000315962 MYT1Q01538 1121 aa11.29□□□□□ -0.6
TRIM55-202ENST00000315962 PHLDB1Q86UU1 1377 aa11.29□□□□□ -0.6
TRIM55-202ENST00000315962 CCNB3Q8WWL7 1395 aa11.27□□□□□ -0.6
TRIM55-202ENST00000315962 GRIN2BQ13224 1484 aa11.27□□□□□ -0.61
TRIM55-202ENST00000315962 SNAPC4Q5SXM2 1469 aa11.27□□□□□ -0.61
TRIM55-202ENST00000315962 FHAD1B1AJZ9 1412 aa11.27□□□□□ -0.61
TRIM55-202ENST00000315962 WDR97A6NE52 1622 aa11.26□□□□□ -0.61
TRIM55-202ENST00000315962 IFT140Q96RY7 1462 aa11.26□□□□□ -0.61
TRIM55-202ENST00000315962 PCF11O94913 1555 aaKnown RBP11.25□□□□□ -0.61
TRIM55-202ENST00000315962 CUL7Q14999 1698 aa11.25□□□□□ -0.61
TRIM55-202ENST00000315962 MTUS2Q5JR59 1369 aa11.24□□□□□ -0.61
TRIM55-202ENST00000315962 WDR62O43379 1518 aa11.24□□□□□ -0.61
TRIM55-202ENST00000315962 LRRC9Q6ZRR7 1453 aa11.24□□□□□ -0.61
TRIM55-202ENST00000315962 CENPBP07199 599 aaPredicted RBP11.24□□□□□ -0.61
TRIM55-202ENST00000315962 CHIC2Q9UKJ5 165 aa11.22□□□□□ -0.61
TRIM55-202ENST00000315962 TIAM1Q13009 1591 aa11.21□□□□□ -0.61
TRIM55-202ENST00000315962 FMN1Q68DA7 1419 aa11.21□□□□□ -0.62
TRIM55-202ENST00000315962 JPH4Q96JJ6 628 aa11.2□□□□□ -0.62
TRIM55-202ENST00000315962 CASKIN1Q8WXD9 1431 aa11.2□□□□□ -0.62
TRIM55-202ENST00000315962 EIF4G3O43432 1585 aaKnown RBP11.19□□□□□ -0.62
TRIM55-202ENST00000315962 RRBP1Q9P2E9 1410 aaKnown RBP11.18□□□□□ -0.62
TRIM55-202ENST00000315962 PBRM1Q86U86 1689 aa11.18□□□□□ -0.62
TRIM55-202ENST00000315962 CTTNBP2Q8WZ74 1663 aa11.17□□□□□ -0.62
TRIM55-202ENST00000315962 ADAMTS12P58397 1594 aa11.17□□□□□ -0.62
TRIM55-202ENST00000315962 THOC2Q8NI27 1593 aaKnown RBP11.17□□□□□ -0.62
TRIM55-202ENST00000315962 MIER1Q8N108 512 aa11.16□□□□□ -0.62
TRIM55-202ENST00000315962 GRIN2AQ12879 1464 aa11.16□□□□□ -0.62
TRIM55-202ENST00000315962 RAB3GAP2Q9H2M9 1393 aa11.16□□□□□ -0.62
TRIM55-202ENST00000315962 RRP7BPQ9NSQ0 103 aa11.15□□□□□ -0.62
TRIM55-202ENST00000315962 FYCO1Q9BQS8 1478 aa11.15□□□□□ -0.62
TRIM55-202ENST00000315962 EFCAB5A4FU69 1503 aa11.15□□□□□ -0.62
TRIM55-202ENST00000315962 DHX57Q6P158 1386 aaKnown RBP11.15□□□□□ -0.62
TRIM55-202ENST00000315962 IQGAP2Q13576 1575 aa11.15□□□□□ -0.62
TRIM55-202ENST00000315962 ZNF316A6NFI3 1004 aaPredicted RBP11.15□□□□□ -0.63
TRIM55-202ENST00000315962 SIN3AQ96ST3 1273 aa11.15□□□□□ -0.63
TRIM55-202ENST00000315962 CDK13Q14004 1512 aaKnown RBP11.14□□□□□ -0.63
TRIM55-202ENST00000315962 ZNF777Q9ULD5 760 aaPredicted RBP11.14□□□□□ -0.63
TRIM55-202ENST00000315962 ZNF644Q9H582 1327 aaPredicted RBP11.14□□□□□ -0.63
TRIM55-202ENST00000315962 KIAA0586Q9BVV6 1533 aa11.12□□□□□ -0.63
TRIM55-202ENST00000315962 PLB1Q6P1J6 1458 aa11.11□□□□□ -0.63
TRIM55-202ENST00000315962 SYNJ2O15056 1496 aa11.1□□□□□ -0.63
TRIM55-202ENST00000315962 SAMD9Q5K651 1589 aa11.1□□□□□ -0.63
TRIM55-202ENST00000315962 MAGI3Q5TCQ9 1506 aa11.1□□□□□ -0.63
TRIM55-202ENST00000315962 DISP1Q96F81 1524 aa11.1□□□□□ -0.63
TRIM55-202ENST00000315962 NCOA2Q15596 1464 aa11.09□□□□□ -0.63
TRIM55-202ENST00000315962 PTPRKQ15262 1439 aa11.08□□□□□ -0.64
TRIM55-202ENST00000315962 FGD6Q6ZV73 1430 aa11.08□□□□□ -0.64
TRIM55-202ENST00000315962 CEP170Q5SW79 1584 aa11.08□□□□□ -0.64
TRIM55-202ENST00000315962 EPRSP07814 1512 aaKnown RBP11.08□□□□□ -0.64
TRIM55-202ENST00000315962 MAGI1Q96QZ7 1491 aaPredicted RBP11.07□□□□□ -0.64
TRIM55-202ENST00000315962 MAP3K1Q13233 1512 aa11.07□□□□□ -0.64
TRIM55-202ENST00000315962 SETD5Q9C0A6 1442 aa11.07□□□□□ -0.64
TRIM55-202ENST00000315962 HIRIP3Q9BW71 556 aaPredicted RBP11.06□□□□□ -0.64
TRIM55-202ENST00000315962 PRG4Q92954 1404 aaPredicted RBP11.06□□□□□ -0.64
TRIM55-202ENST00000315962 TRIM52Q96A61 297 aa11.06□□□□□ -0.64
TRIM55-202ENST00000315962 FOXD1Q16676 465 aa11.05□□□□□ -0.64
TRIM55-202ENST00000315962 LRRIQ1Q96JM4 1722 aa11.05□□□□□ -0.64
TRIM55-202ENST00000315962 KCNH8Q96L42 1107 aa11.04□□□□□ -0.64
TRIM55-202ENST00000315962 MYOM3Q5VTT5 1437 aa11.03□□□□□ -0.64
TRIM55-202ENST00000315962 CDK11AQ9UQ88 783 aaPredicted RBP11.03□□□□□ -0.64
TRIM55-202ENST00000315962 CFAP43Q8NDM7 1665 aa11.03□□□□□ -0.64
TRIM55-202ENST00000315962 NUP153P49790 1475 aaKnown RBP11.03□□□□□ -0.64
TRIM55-202ENST00000315962 UGGT2Q9NYU1 1516 aa11.03□□□□□ -0.64
TRIM55-202ENST00000315962 CFDP1Q9UEE9 299 aaPredicted RBP11.02□□□□□ -0.64
TRIM55-202ENST00000315962 CARMIL2Q6F5E8 1435 aa11.01□□□□□ -0.65
TRIM55-202ENST00000315962 KIAA0556O60303 1618 aa11.01□□□□□ -0.65
TRIM55-202ENST00000315962 PLEKHD1A6NEE1 506 aa11.01□□□□□ -0.65
TRIM55-202ENST00000315962 NUP160Q12769 1436 aa11□□□□□ -0.65
TRIM55-202ENST00000315962 PTPRGP23470 1445 aa10.99□□□□□ -0.65
TRIM55-202ENST00000315962 CCDC18Q5T9S5 1454 aa10.98□□□□□ -0.65
TRIM55-202ENST00000315962 HECW1Q76N89 1606 aa10.97□□□□□ -0.65
TRIM55-202ENST00000315962 EHBP1L1Q8N3D4 1523 aa10.96□□□□□ -0.66
TRIM55-202ENST00000315962 HNRNPMP52272 730 aaKnown RBP eCLIP10.95□□□□□ -0.66
TRIM55-202ENST00000315962 MAPKBP1O60336 1514 aa10.94□□□□□ -0.66
TRIM55-202ENST00000315962 ERCC6L2Q5T890 1561 aa10.94□□□□□ -0.66
TRIM55-202ENST00000315962 SUPT6HQ7KZ85 1726 aaKnown RBP10.94□□□□□ -0.66
TRIM55-202ENST00000315962 NAIPQ13075 1403 aa10.94□□□□□ -0.66
TRIM55-202ENST00000315962 RAPGEF6Q8TEU7 1601 aa10.93□□□□□ -0.66
TRIM55-202ENST00000315962 CLSPNQ9HAW4 1339 aa10.93□□□□□ -0.66
TRIM55-202ENST00000315962 PTPN23Q9H3S7 1636 aa10.92□□□□□ -0.66
TRIM55-202ENST00000315962 ATP10BO94823 1461 aa10.92□□□□□ -0.66
TRIM55-202ENST00000315962 HFM1A2PYH4 1435 aa10.9□□□□□ -0.66
TRIM55-202ENST00000315962 TROQ12816 1431 aaPredicted RBP10.9□□□□□ -0.66
TRIM55-202ENST00000315962 MPHOSPH9Q99550 1183 aa10.9□□□□□ -0.66
TRIM55-202ENST00000315962 ARHGEF11O15085 1522 aa10.9□□□□□ -0.67
TRIM55-202ENST00000315962 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms