RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 GOLGA3Q08378 1498 aa29.61■■■□□ 2.33
HMGA1-201ENST00000311487 NUP160Q12769 1436 aa29.59■■■□□ 2.33
HMGA1-201ENST00000311487 KIAA0586Q9BVV6 1533 aa29.47■■■□□ 2.31
HMGA1-201ENST00000311487 CLASP1Q7Z460 1538 aa29.46■■■□□ 2.31
HMGA1-201ENST00000311487 JPH4Q96JJ6 628 aa29.45■■■□□ 2.31
HMGA1-201ENST00000311487 CTTNBP2Q8WZ74 1663 aa29.44■■■□□ 2.3
HMGA1-201ENST00000311487 IQGAP2Q13576 1575 aa29.41■■■□□ 2.3
HMGA1-201ENST00000311487 P3H3Q8IVL6 736 aa29.39■■■□□ 2.3
HMGA1-201ENST00000311487 TTBK1Q5TCY1 1321 aaPredicted RBP29.39■■■□□ 2.3
HMGA1-201ENST00000311487 TNIKQ9UKE5 1360 aa29.34■■■□□ 2.29
HMGA1-201ENST00000311487 PRG4Q92954 1404 aaPredicted RBP29.33■■■□□ 2.29
HMGA1-201ENST00000311487 ERCC6L2Q5T890 1561 aa29.32■■■□□ 2.28
HMGA1-201ENST00000311487 SHROOM2Q13796 1616 aa29.26■■■□□ 2.27
HMGA1-201ENST00000311487 DNAJC5Q9H3Z4 198 aa29.24■■■□□ 2.27
HMGA1-201ENST00000311487 DISP1Q96F81 1524 aa29.22■■■□□ 2.27
HMGA1-201ENST00000311487 UGGT2Q9NYU1 1516 aa29.22■■■□□ 2.27
HMGA1-201ENST00000311487 ARHGEF11O15085 1522 aa29.19■■■□□ 2.26
HMGA1-201ENST00000311487 CEP162Q5TB80 1403 aa29.19■■■□□ 2.26
HMGA1-201ENST00000311487 CLIP1P30622 1438 aa29.17■■■□□ 2.26
HMGA1-201ENST00000311487 FHOD3Q2V2M9 1422 aa29.14■■■□□ 2.26
HMGA1-201ENST00000311487 CARMIL2Q6F5E8 1435 aa29.14■■■□□ 2.26
HMGA1-201ENST00000311487 ARHGAP35Q9NRY4 1499 aa29.14■■■□□ 2.25
HMGA1-201ENST00000311487 RIMBP3CA6NJZ7 1639 aa29.13■■■□□ 2.25
HMGA1-201ENST00000311487 RIMBP3BA6NNM3 1639 aa29.13■■■□□ 2.25
HMGA1-201ENST00000311487 RIMBP3Q9UFD9 1639 aa29.13■■■□□ 2.25
HMGA1-201ENST00000311487 KIAA0556O60303 1618 aa29.13■■■□□ 2.25
HMGA1-201ENST00000311487 CYB5RLQ6IPT4 315 aa29.1■■■□□ 2.25
HMGA1-201ENST00000311487 SAMD9Q5K651 1589 aa29.09■■■□□ 2.25
HMGA1-201ENST00000311487 ARAP1Q96P48 1450 aa29.03■■■□□ 2.24
HMGA1-201ENST00000311487 PTPRGP23470 1445 aa29.03■■■□□ 2.24
HMGA1-201ENST00000311487 EFCAB5A4FU69 1503 aa29.02■■■□□ 2.24
HMGA1-201ENST00000311487 ARID3CA6NKF2 412 aa28.98■■■□□ 2.23
HMGA1-201ENST00000311487 ATP1B4Q9UN42 357 aaPredicted RBP28.97■■■□□ 2.23
HMGA1-201ENST00000311487 PLB1Q6P1J6 1458 aa28.92■■■□□ 2.22
HMGA1-201ENST00000311487 FMN1Q68DA7 1419 aa28.81■■■□□ 2.2
HMGA1-201ENST00000311487 UACAQ9BZF9 1416 aa28.81■■■□□ 2.2
HMGA1-201ENST00000311487 ADCY10Q96PN6 1610 aa28.75■■■□□ 2.19
HMGA1-201ENST00000311487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.75■■■□□ 2.19
HMGA1-201ENST00000311487 HNRNPUL2Q1KMD3 747 aaKnown RBP28.75■■■□□ 2.19
HMGA1-201ENST00000311487 ABCA8O94911 1581 aa28.75■■■□□ 2.19
HMGA1-201ENST00000311487 PCF11O94913 1555 aaKnown RBP28.74■■■□□ 2.19
HMGA1-201ENST00000311487 RAPGEF6Q8TEU7 1601 aa28.74■■■□□ 2.19
HMGA1-201ENST00000311487 VPS8Q8N3P4 1428 aa28.73■■■□□ 2.19
HMGA1-201ENST00000311487 ABCC2Q92887 1545 aa28.7■■■□□ 2.19
HMGA1-201ENST00000311487 NUP153P49790 1475 aaKnown RBP28.7■■■□□ 2.18
HMGA1-201ENST00000311487 CASKIN1Q8WXD9 1431 aa28.68■■■□□ 2.18
HMGA1-201ENST00000311487 NPM1P06748 294 aaKnown RBP eCLIP28.65■■■□□ 2.18
HMGA1-201ENST00000311487 CDK13Q14004 1512 aaKnown RBP28.64■■■□□ 2.18
HMGA1-201ENST00000311487 UHRF1BP1LA0JNW5 1464 aa28.63■■■□□ 2.17
HMGA1-201ENST00000311487 ATP10BO94823 1461 aa28.62■■■□□ 2.17
HMGA1-201ENST00000311487 LRRIQ1Q96JM4 1722 aa28.61■■■□□ 2.17
HMGA1-201ENST00000311487 FYCO1Q9BQS8 1478 aa28.6■■■□□ 2.17
HMGA1-201ENST00000311487 HECW1Q76N89 1606 aa28.6■■■□□ 2.17
HMGA1-201ENST00000311487 PPARGC1BQ86YN6 1023 aaKnown RBP28.6■■■□□ 2.17
HMGA1-201ENST00000311487 EPRSP07814 1512 aaKnown RBP28.59■■■□□ 2.17
HMGA1-201ENST00000311487 ZCCHC11Q5TAX3 1644 aaKnown RBP28.56■■■□□ 2.16
HMGA1-201ENST00000311487 KDM5BQ9UGL1 1544 aa28.55■■■□□ 2.16
HMGA1-201ENST00000311487 APLP2Q06481 763 aa28.51■■■□□ 2.16
HMGA1-201ENST00000311487 KCNH8Q96L42 1107 aa28.51■■■□□ 2.16
HMGA1-201ENST00000311487 KANK4Q5T7N3 995 aaPredicted RBP28.48■■■□□ 2.15
HMGA1-201ENST00000311487 ASXL2Q76L83 1435 aa28.46■■■□□ 2.15
HMGA1-201ENST00000311487 PLEKHD1A6NEE1 506 aa28.45■■■□□ 2.15
HMGA1-201ENST00000311487 CCDC18Q5T9S5 1454 aa28.43■■■□□ 2.14
HMGA1-201ENST00000311487 MAGI3Q5TCQ9 1506 aa28.41■■■□□ 2.14
HMGA1-201ENST00000311487 CDK11AQ9UQ88 783 aaPredicted RBP28.39■■■□□ 2.14
HMGA1-201ENST00000311487 TIAM1Q13009 1591 aa28.39■■■□□ 2.14
HMGA1-201ENST00000311487 MTUS2Q5JR59 1369 aa28.36■■■□□ 2.13
HMGA1-201ENST00000311487 WDR7Q9Y4E6 1490 aa28.35■■■□□ 2.13
HMGA1-201ENST00000311487 TRHP20396 242 aaPredicted RBP28.33■■■□□ 2.13
HMGA1-201ENST00000311487 CFAP43Q8NDM7 1665 aa28.33■■■□□ 2.13
HMGA1-201ENST00000311487 MAPKBP1O60336 1514 aa28.33■■■□□ 2.13
HMGA1-201ENST00000311487 FAM69CQ0P6D2 419 aa28.31■■■□□ 2.12
HMGA1-201ENST00000311487 LRRC9Q6ZRR7 1453 aa28.3■■■□□ 2.12
HMGA1-201ENST00000311487 TROQ12816 1431 aaPredicted RBP28.29■■■□□ 2.12
HMGA1-201ENST00000311487 KIF14Q15058 1648 aa28.27■■■□□ 2.12
HMGA1-201ENST00000311487 MAP3K1Q13233 1512 aa28.24■■■□□ 2.11
HMGA1-201ENST00000311487 ABCC10Q5T3U5 1492 aa28.2■■■□□ 2.11
HMGA1-201ENST00000311487 EHBP1L1Q8N3D4 1523 aa28.19■■■□□ 2.1
HMGA1-201ENST00000311487 DIP2BQ9P265 1576 aa28.18■■■□□ 2.1
HMGA1-201ENST00000311487 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.16■■■□□ 2.18e-9■■■■□ 20.1
HMGA1-201ENST00000311487 TTC37Q6PGP7 1564 aa28.15■■■□□ 2.1
HMGA1-201ENST00000311487 NCOA2Q15596 1464 aa28.14■■■□□ 2.1
HMGA1-201ENST00000311487 KIF13AQ9H1H9 1805 aa28.12■■■□□ 2.09
HMGA1-201ENST00000311487 SUPT6HQ7KZ85 1726 aaKnown RBP28.1■■■□□ 2.09
HMGA1-201ENST00000311487 TSPOAP1O95153 1857 aa28.1■■■□□ 2.09
HMGA1-201ENST00000311487 CD109Q6YHK3 1445 aa28.08■■■□□ 2.09
HMGA1-201ENST00000311487 CCNB3Q8WWL7 1395 aa28.08■■■□□ 2.09
HMGA1-201ENST00000311487 PHLDB1Q86UU1 1377 aa28.07■■■□□ 2.08
HMGA1-201ENST00000311487 ZNF777Q9ULD5 760 aaPredicted RBP28.07■■■□□ 2.08
HMGA1-201ENST00000311487 ABCA9Q8IUA7 1624 aa28.05■■■□□ 2.08
HMGA1-201ENST00000311487 GLI2P10070 1586 aa28.03■■■□□ 2.08
HMGA1-201ENST00000311487 GPATCH8Q9UKJ3 1502 aaKnown RBP28.02■■■□□ 2.08
HMGA1-201ENST00000311487 CFDP1Q9UEE9 299 aaPredicted RBP28.01■■■□□ 2.07
HMGA1-201ENST00000311487 MAP3K4Q9Y6R4 1608 aa28■■■□□ 2.07
HMGA1-201ENST00000311487 ZNF644Q9H582 1327 aaPredicted RBP28■■■□□ 2.07
HMGA1-201ENST00000311487 CDC42BPAQ5VT25 1732 aa27.98■■■□□ 2.07
HMGA1-201ENST00000311487 PLCH2O75038 1416 aa27.97■■■□□ 2.07
HMGA1-201ENST00000311487 ARHGAP5Q13017 1502 aa27.96■■■□□ 2.07
HMGA1-201ENST00000311487 MYO5CQ9NQX4 1742 aa27.96■■■□□ 2.07
HMGA1-201ENST00000311487 CDC42BPBQ9Y5S2 1711 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms