RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 DNMBPQ6XZF7 1577 aa16.95■□□□□ 0.3
PTPN2-201ENST00000309660 RRBP1Q9P2E9 1410 aaKnown RBP16.93■□□□□ 0.3
PTPN2-201ENST00000309660 MIER1Q8N108 512 aa16.93■□□□□ 0.3
PTPN2-201ENST00000309660 ABCA10Q8WWZ4 1543 aa16.9■□□□□ 0.3
PTPN2-201ENST00000309660 FHAD1B1AJZ9 1412 aa16.89■□□□□ 0.29
PTPN2-201ENST00000309660 URB2Q14146 1524 aaKnown RBP16.88■□□□□ 0.29
PTPN2-201ENST00000309660 PHLDB1Q86UU1 1377 aa16.87■□□□□ 0.29
PTPN2-201ENST00000309660 TIAM1Q13009 1591 aa16.86■□□□□ 0.29
PTPN2-201ENST00000309660 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
PTPN2-201ENST00000309660 LRRC9Q6ZRR7 1453 aa16.85■□□□□ 0.29
PTPN2-201ENST00000309660 GTF3C3Q9Y5Q9 886 aa16.84■□□□□ 0.29
PTPN2-201ENST00000309660 RAB3GAP2Q9H2M9 1393 aa16.84■□□□□ 0.29
PTPN2-201ENST00000309660 CLSPNQ9HAW4 1339 aa16.83■□□□□ 0.28
PTPN2-201ENST00000309660 ARID3CA6NKF2 412 aa16.82■□□□□ 0.28
PTPN2-201ENST00000309660 PCF11O94913 1555 aaKnown RBP16.82■□□□□ 0.28
PTPN2-201ENST00000309660 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
PTPN2-201ENST00000309660 GAPVD1Q14C86 1478 aa16.8■□□□□ 0.28
PTPN2-201ENST00000309660 MTUS2Q5JR59 1369 aa16.77■□□□□ 0.28
PTPN2-201ENST00000309660 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
PTPN2-201ENST00000309660 SETD5Q9C0A6 1442 aa16.75■□□□□ 0.27
PTPN2-201ENST00000309660 CUL7Q14999 1698 aa16.73■□□□□ 0.27
PTPN2-201ENST00000309660 FMN1Q68DA7 1419 aa16.72■□□□□ 0.27
PTPN2-201ENST00000309660 MAP3K1Q13233 1512 aa16.72■□□□□ 0.27
PTPN2-201ENST00000309660 CASKIN1Q8WXD9 1431 aa16.72■□□□□ 0.27
PTPN2-201ENST00000309660 AQRO60306 1485 aaKnown RBP eCLIP16.71■□□□□ 0.274e-6■■■■■ 31
PTPN2-201ENST00000309660 FYCO1Q9BQS8 1478 aa16.7■□□□□ 0.26
PTPN2-201ENST00000309660 KIF21AQ7Z4S6 1674 aa16.7■□□□□ 0.26
PTPN2-201ENST00000309660 EFCAB5A4FU69 1503 aa16.7■□□□□ 0.26
PTPN2-201ENST00000309660 CTTNBP2Q8WZ74 1663 aa16.66■□□□□ 0.26
PTPN2-201ENST00000309660 HIRIP3Q9BW71 556 aaPredicted RBP16.64■□□□□ 0.25
PTPN2-201ENST00000309660 CHIC2Q9UKJ5 165 aa16.64■□□□□ 0.25
PTPN2-201ENST00000309660 CFAP43Q8NDM7 1665 aa16.64■□□□□ 0.25
PTPN2-201ENST00000309660 ABCA5Q8WWZ7 1642 aa16.64■□□□□ 0.25
PTPN2-201ENST00000309660 FGD6Q6ZV73 1430 aa16.61■□□□□ 0.25
PTPN2-201ENST00000309660 WDR97A6NE52 1622 aa16.61■□□□□ 0.25
PTPN2-201ENST00000309660 MAPKBP1O60336 1514 aa16.61■□□□□ 0.25
PTPN2-201ENST00000309660 FBLN2P98095 1184 aa16.61■□□□□ 0.25
PTPN2-201ENST00000309660 SNAPC4Q5SXM2 1469 aa16.6■□□□□ 0.25
PTPN2-201ENST00000309660 RRP7BPQ9NSQ0 103 aa16.59■□□□□ 0.25
PTPN2-201ENST00000309660 NCOA2Q15596 1464 aa16.56■□□□□ 0.24
PTPN2-201ENST00000309660 DDX10Q13206 875 aaKnown RBP16.55■□□□□ 0.24
PTPN2-201ENST00000309660 MRC2Q9UBG0 1479 aa16.55■□□□□ 0.24
PTPN2-201ENST00000309660 TARBP1Q13395 1621 aaKnown RBP16.55■□□□□ 0.24
PTPN2-201ENST00000309660 TRIM52Q96A61 297 aa16.55■□□□□ 0.24
PTPN2-201ENST00000309660 ZNF608Q9ULD9 1512 aaPredicted RBP16.55■□□□□ 0.24
PTPN2-201ENST00000309660 PTPRKQ15262 1439 aa16.53■□□□□ 0.24
PTPN2-201ENST00000309660 GRIN2BQ13224 1484 aa16.52■□□□□ 0.23
PTPN2-201ENST00000309660 SAMD9Q5K651 1589 aa16.52■□□□□ 0.23
PTPN2-201ENST00000309660 MYOM3Q5VTT5 1437 aa16.52■□□□□ 0.23
PTPN2-201ENST00000309660 TONSLQ96HA7 1378 aa16.51■□□□□ 0.23
PTPN2-201ENST00000309660 ERCC6Q03468 1493 aa16.5■□□□□ 0.23
PTPN2-201ENST00000309660 CCDC18Q5T9S5 1454 aa16.5■□□□□ 0.23
PTPN2-201ENST00000309660 CHMP7Q8WUX9 453 aaPredicted RBP16.49■□□□□ 0.23
PTPN2-201ENST00000309660 KCNH8Q96L42 1107 aa16.49■□□□□ 0.23
PTPN2-201ENST00000309660 IQGAP2Q13576 1575 aa16.47■□□□□ 0.23
PTPN2-201ENST00000309660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.47■□□□□ 0.23
PTPN2-201ENST00000309660 CDK13Q14004 1512 aaKnown RBP16.47■□□□□ 0.23
PTPN2-201ENST00000309660 PPP1R15AO75807 674 aaPredicted RBP16.46■□□□□ 0.23
PTPN2-201ENST00000309660 PBRM1Q86U86 1689 aa16.46■□□□□ 0.22
PTPN2-201ENST00000309660 LRRIQ1Q96JM4 1722 aa16.45■□□□□ 0.22
PTPN2-201ENST00000309660 MAGI3Q5TCQ9 1506 aa16.44■□□□□ 0.22
PTPN2-201ENST00000309660 EHBP1L1Q8N3D4 1523 aa16.44■□□□□ 0.22
PTPN2-201ENST00000309660 SUPT6HQ7KZ85 1726 aaKnown RBP16.43■□□□□ 0.22
PTPN2-201ENST00000309660 ADAMTS12P58397 1594 aa16.43■□□□□ 0.22
PTPN2-201ENST00000309660 HFM1A2PYH4 1435 aa16.43■□□□□ 0.22
PTPN2-201ENST00000309660 EPRSP07814 1512 aaKnown RBP16.42■□□□□ 0.22
PTPN2-201ENST00000309660 IFT140Q96RY7 1462 aa16.42■□□□□ 0.22
PTPN2-201ENST00000309660 NAIPQ13075 1403 aa16.42■□□□□ 0.22
PTPN2-201ENST00000309660 FOXD1Q16676 465 aa16.41■□□□□ 0.22
PTPN2-201ENST00000309660 ZNF777Q9ULD5 760 aaPredicted RBP16.4■□□□□ 0.22
PTPN2-201ENST00000309660 UACAQ9BZF9 1416 aa16.4■□□□□ 0.22
PTPN2-201ENST00000309660 TIMELESSQ9UNS1 1208 aa16.39■□□□□ 0.21
PTPN2-201ENST00000309660 ZNF644Q9H582 1327 aaPredicted RBP16.39■□□□□ 0.21
PTPN2-201ENST00000309660 PTPN23Q9H3S7 1636 aa16.39■□□□□ 0.21
PTPN2-201ENST00000309660 HECW1Q76N89 1606 aa16.38■□□□□ 0.21
PTPN2-201ENST00000309660 UGGT2Q9NYU1 1516 aa16.38■□□□□ 0.21
PTPN2-201ENST00000309660 CDK11AQ9UQ88 783 aaPredicted RBP16.37■□□□□ 0.21
PTPN2-201ENST00000309660 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
PTPN2-201ENST00000309660 PELP1Q8IZL8 1130 aaKnown RBP16.36■□□□□ 0.21
PTPN2-201ENST00000309660 KIAA0586Q9BVV6 1533 aa16.34■□□□□ 0.21
PTPN2-201ENST00000309660 GRIN2AQ12879 1464 aa16.33■□□□□ 0.2
PTPN2-201ENST00000309660 WDR62O43379 1518 aa16.32■□□□□ 0.2
PTPN2-201ENST00000309660 MPHOSPH9Q99550 1183 aa16.32■□□□□ 0.2
PTPN2-201ENST00000309660 ANP32CO43423 234 aa16.31■□□□□ 0.2
PTPN2-201ENST00000309660 CFDP1Q9UEE9 299 aaPredicted RBP16.31■□□□□ 0.2
PTPN2-201ENST00000309660 EIF4G3O43432 1585 aaKnown RBP16.3■□□□□ 0.2
PTPN2-201ENST00000309660 JPH4Q96JJ6 628 aa16.3■□□□□ 0.2
PTPN2-201ENST00000309660 DISP1Q96F81 1524 aa16.3■□□□□ 0.2
PTPN2-201ENST00000309660 PRG4Q92954 1404 aaPredicted RBP16.28■□□□□ 0.2
PTPN2-201ENST00000309660 ARHGEF11O15085 1522 aa16.27■□□□□ 0.2
PTPN2-201ENST00000309660 SLC4A1APQ9BWU0 796 aaKnown RBP16.27■□□□□ 0.2
PTPN2-201ENST00000309660 NUP153P49790 1475 aaKnown RBP16.27■□□□□ 0.19
PTPN2-201ENST00000309660 PLB1Q6P1J6 1458 aa16.27■□□□□ 0.19
PTPN2-201ENST00000309660 KIAA0556O60303 1618 aa16.26■□□□□ 0.19
PTPN2-201ENST00000309660 MIA2Q96PC5 1412 aa16.26■□□□□ 0.19
PTPN2-201ENST00000309660 L3MBTL2Q969R5 705 aa16.24■□□□□ 0.19
PTPN2-201ENST00000309660 TCOF1Q13428 1488 aaKnown RBP16.24■□□□□ 0.19
PTPN2-201ENST00000309660 KDM6BO15054 1643 aa16.23■□□□□ 0.19
PTPN2-201ENST00000309660 HSPA5P11021 654 aaKnown RBP16.22■□□□□ 0.19
PTPN2-201ENST00000309660 ZNF326Q5BKZ1 582 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms