RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 CTTNBP2Q8WZ74 1663 aa18.33■□□□□ 0.52
CSPG4P1Y-201ENST00000306641 KIAA0586Q9BVV6 1533 aa18.29■□□□□ 0.52
CSPG4P1Y-201ENST00000306641 PRXQ9BXM0 1461 aa18.29■□□□□ 0.52
CSPG4P1Y-201ENST00000306641 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
CSPG4P1Y-201ENST00000306641 IQGAP2Q13576 1575 aa18.28■□□□□ 0.52
CSPG4P1Y-201ENST00000306641 FAM9AQ8IZU1 332 aaPredicted RBP18.26■□□□□ 0.51
CSPG4P1Y-201ENST00000306641 KIF21BO75037 1637 aa18.24■□□□□ 0.51
CSPG4P1Y-201ENST00000306641 ARAP1Q96P48 1450 aa18.23■□□□□ 0.51
CSPG4P1Y-201ENST00000306641 ERCC6L2Q5T890 1561 aa18.21■□□□□ 0.51
CSPG4P1Y-201ENST00000306641 JPH4Q96JJ6 628 aa18.2■□□□□ 0.5
CSPG4P1Y-201ENST00000306641 PRG4Q92954 1404 aaPredicted RBP18.2■□□□□ 0.5
CSPG4P1Y-201ENST00000306641 CYB5RLQ6IPT4 315 aa18.14■□□□□ 0.49
CSPG4P1Y-201ENST00000306641 UGGT2Q9NYU1 1516 aa18.13■□□□□ 0.49
CSPG4P1Y-201ENST00000306641 CARMIL2Q6F5E8 1435 aa18.13■□□□□ 0.49
CSPG4P1Y-201ENST00000306641 GOLGA3Q08378 1498 aa18.11■□□□□ 0.49
CSPG4P1Y-201ENST00000306641 KIAA0556O60303 1618 aa18.1■□□□□ 0.49
CSPG4P1Y-201ENST00000306641 DISP1Q96F81 1524 aa18.06■□□□□ 0.48
CSPG4P1Y-201ENST00000306641 EHMT2Q96KQ7 1210 aa18.04■□□□□ 0.48
CSPG4P1Y-201ENST00000306641 TNIKQ9UKE5 1360 aa18.03■□□□□ 0.48
CSPG4P1Y-201ENST00000306641 UBTFP17480 764 aaKnown RBP18.01■□□□□ 0.47
CSPG4P1Y-201ENST00000306641 SAMD9Q5K651 1589 aa18■□□□□ 0.47
CSPG4P1Y-201ENST00000306641 PTPRGP23470 1445 aa17.99■□□□□ 0.47
CSPG4P1Y-201ENST00000306641 TTBK1Q5TCY1 1321 aaPredicted RBP17.98■□□□□ 0.47
CSPG4P1Y-201ENST00000306641 ADCY10Q96PN6 1610 aa17.97■□□□□ 0.47
CSPG4P1Y-201ENST00000306641 EFCAB5A4FU69 1503 aa17.96■□□□□ 0.47
CSPG4P1Y-201ENST00000306641 RANGAP1P46060 587 aaPredicted RBP17.94■□□□□ 0.46
CSPG4P1Y-201ENST00000306641 ABCC2Q92887 1545 aa17.9■□□□□ 0.46
CSPG4P1Y-201ENST00000306641 UACAQ9BZF9 1416 aa17.89■□□□□ 0.46
CSPG4P1Y-201ENST00000306641 P3H3Q8IVL6 736 aa17.88■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 NPM1P06748 294 aaKnown RBP eCLIP17.87■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 UHRF1BP1LA0JNW5 1464 aa17.87■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 FHOD3Q2V2M9 1422 aa17.86■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 ABCA8O94911 1581 aa17.85■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 RAPGEF6Q8TEU7 1601 aa17.84■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 PLB1Q6P1J6 1458 aa17.83■□□□□ 0.45
CSPG4P1Y-201ENST00000306641 ZCCHC11Q5TAX3 1644 aaKnown RBP17.83■□□□□ 0.44
CSPG4P1Y-201ENST00000306641 MAPKBP1O60336 1514 aa17.82■□□□□ 0.44
CSPG4P1Y-201ENST00000306641 ARHGAP35Q9NRY4 1499 aa17.82■□□□□ 0.44
CSPG4P1Y-201ENST00000306641 TRHP20396 242 aaPredicted RBP17.79■□□□□ 0.44
CSPG4P1Y-201ENST00000306641 KDM5BQ9UGL1 1544 aa17.78■□□□□ 0.44
CSPG4P1Y-201ENST00000306641 KIF13AQ9H1H9 1805 aa17.77■□□□□ 0.44
CSPG4P1Y-201ENST00000306641 CLIP1P30622 1438 aa17.76■□□□□ 0.43
CSPG4P1Y-201ENST00000306641 FMN1Q68DA7 1419 aa17.76■□□□□ 0.43
CSPG4P1Y-201ENST00000306641 HECW1Q76N89 1606 aa17.74■□□□□ 0.43
CSPG4P1Y-201ENST00000306641 DIP2BQ9P265 1576 aa17.73■□□□□ 0.43
CSPG4P1Y-201ENST00000306641 CEP162Q5TB80 1403 aa17.71■□□□□ 0.43
CSPG4P1Y-201ENST00000306641 ASXL2Q76L83 1435 aa17.71■□□□□ 0.43
CSPG4P1Y-201ENST00000306641 NUP153P49790 1475 aaKnown RBP17.69■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 ABCC10Q5T3U5 1492 aa17.69■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 LOC105371045A0A1W2PR82 267 aa17.68■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 PCF11O94913 1555 aaKnown RBP17.67■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 WDR7Q9Y4E6 1490 aa17.67■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 ARID3CA6NKF2 412 aa17.66■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 TSPOAP1O95153 1857 aa17.65■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 ATP10BO94823 1461 aa17.65■□□□□ 0.42
CSPG4P1Y-201ENST00000306641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 LRRIQ1Q96JM4 1722 aa17.64■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 ATP1B4Q9UN42 357 aaPredicted RBP17.63■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 GLI2P10070 1586 aa17.62■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 FAM69CQ0P6D2 419 aa17.62■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 CDK13Q14004 1512 aaKnown RBP17.62■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 FYCO1Q9BQS8 1478 aa17.61■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 EPRSP07814 1512 aaKnown RBP17.61■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 CASKIN1Q8WXD9 1431 aa17.6■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 CFAP43Q8NDM7 1665 aa17.6■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 CCDC18Q5T9S5 1454 aa17.59■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 MAP3K4Q9Y6R4 1608 aa17.58■□□□□ 0.41
CSPG4P1Y-201ENST00000306641 PLEKHD1A6NEE1 506 aa17.53■□□□□ 0.4
CSPG4P1Y-201ENST00000306641 KCNH8Q96L42 1107 aa17.53■□□□□ 0.4
CSPG4P1Y-201ENST00000306641 PPRC1Q5VV67 1664 aaKnown RBP17.52■□□□□ 0.4
CSPG4P1Y-201ENST00000306641 ABCA9Q8IUA7 1624 aa17.52■□□□□ 0.4
CSPG4P1Y-201ENST00000306641 CDK11AQ9UQ88 783 aaPredicted RBP17.51■□□□□ 0.39
CSPG4P1Y-201ENST00000306641 VPS8Q8N3P4 1428 aa17.5■□□□□ 0.39
CSPG4P1Y-201ENST00000306641 KIF14Q15058 1648 aa17.5■□□□□ 0.39
CSPG4P1Y-201ENST00000306641 TEX14Q8IWB6 1497 aa17.5■□□□□ 0.39
CSPG4P1Y-201ENST00000306641 CD109Q6YHK3 1445 aa17.47■□□□□ 0.39
CSPG4P1Y-201ENST00000306641 TROQ12816 1431 aaPredicted RBP17.46■□□□□ 0.39
CSPG4P1Y-201ENST00000306641 TTC37Q6PGP7 1564 aa17.45■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 MYO5CQ9NQX4 1742 aa17.45■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 KDM6BO15054 1643 aa17.44■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.44■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 MAGI3Q5TCQ9 1506 aa17.43■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 CFAP74Q9C0B2 1584 aa17.43■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 TIAM1Q13009 1591 aa17.4■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 EHBP1L1Q8N3D4 1523 aa17.4■□□□□ 0.38
CSPG4P1Y-201ENST00000306641 MTUS2Q5JR59 1369 aa17.38■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 SUPT6HQ7KZ85 1726 aaKnown RBP17.35■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 PREX2Q70Z35 1606 aa17.35■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 CDC42BPAQ5VT25 1732 aa17.35■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 NEO1Q92859 1461 aa17.34■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 ITSN2Q9NZM3 1697 aa17.33■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 MAP3K1Q13233 1512 aa17.33■□□□□ 0.37
CSPG4P1Y-201ENST00000306641 CDC42BPBQ9Y5S2 1711 aa17.33■□□□□ 0.36
CSPG4P1Y-201ENST00000306641 ARAP3Q8WWN8 1544 aa17.32■□□□□ 0.36
CSPG4P1Y-201ENST00000306641 APLP2Q06481 763 aa17.32■□□□□ 0.36
CSPG4P1Y-201ENST00000306641 ARHGAP5Q13017 1502 aa17.31■□□□□ 0.36
CSPG4P1Y-201ENST00000306641 FANCAO15360 1455 aa17.31■□□□□ 0.36
CSPG4P1Y-201ENST00000306641 PHLDB1Q86UU1 1377 aa17.3■□□□□ 0.36
CSPG4P1Y-201ENST00000306641 PLCH2O75038 1416 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms