RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 AEBP2Q6ZN18 517 aaPredicted RBP13.09□□□□□ -0.31
PTPRE-202ENST00000306042 FHAD1B1AJZ9 1412 aa13.09□□□□□ -0.31
PTPRE-202ENST00000306042 NESP48681 1621 aa13.08□□□□□ -0.31
PTPRE-202ENST00000306042 HMGXB3Q12766 1538 aa13.08□□□□□ -0.32
PTPRE-202ENST00000306042 CENPBP07199 599 aaPredicted RBP13.06□□□□□ -0.32
PTPRE-202ENST00000306042 RRP7BPQ9NSQ0 103 aa13.05□□□□□ -0.32
PTPRE-202ENST00000306042 FGD5Q6ZNL6 1462 aa13.04□□□□□ -0.32
PTPRE-202ENST00000306042 CCNB3Q8WWL7 1395 aa13.04□□□□□ -0.32
PTPRE-202ENST00000306042 RAPGEF2Q9Y4G8 1499 aa13.03□□□□□ -0.32
PTPRE-202ENST00000306042 MRC2Q9UBG0 1479 aa13.03□□□□□ -0.32
PTPRE-202ENST00000306042 GAPVD1Q14C86 1478 aa13.02□□□□□ -0.32
PTPRE-202ENST00000306042 YTHDC1Q96MU7 727 aaKnown RBP13.02□□□□□ -0.33
PTPRE-202ENST00000306042 CFTRP13569 1480 aa13.02□□□□□ -0.33
PTPRE-202ENST00000306042 PPP1R15AO75807 674 aaPredicted RBP13.02□□□□□ -0.33
PTPRE-202ENST00000306042 RAD54L2Q9Y4B4 1467 aa13.01□□□□□ -0.33
PTPRE-202ENST00000306042 HRCP23327 699 aa13□□□□□ -0.33
PTPRE-202ENST00000306042 AQRO60306 1485 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPRE-202ENST00000306042 MLECQ14165 292 aa12.98□□□□□ -0.33
PTPRE-202ENST00000306042 TONSLQ96HA7 1378 aa12.97□□□□□ -0.33
PTPRE-202ENST00000306042 FMN1Q68DA7 1419 aa12.97□□□□□ -0.33
PTPRE-202ENST00000306042 NEFLP07196 543 aa12.97□□□□□ -0.33
PTPRE-202ENST00000306042 PTPRGP23470 1445 aa12.95□□□□□ -0.34
PTPRE-202ENST00000306042 EFCAB2Q5VUJ9 269 aa12.95□□□□□ -0.34
PTPRE-202ENST00000306042 SENP3Q9H4L4 574 aaPredicted RBP12.93□□□□□ -0.34
PTPRE-202ENST00000306042 C14orf37Q86TY3 774 aa12.92□□□□□ -0.34
PTPRE-202ENST00000306042 KDM2AQ9Y2K7 1162 aa12.92□□□□□ -0.34
PTPRE-202ENST00000306042 ACIN1Q9UKV3 1341 aaKnown RBP12.92□□□□□ -0.34
PTPRE-202ENST00000306042 IFT140Q96RY7 1462 aa12.92□□□□□ -0.34
PTPRE-202ENST00000306042 GRIN2BQ13224 1484 aa12.91□□□□□ -0.34
PTPRE-202ENST00000306042 UNC13AQ9UPW8 1703 aa12.89□□□□□ -0.35
PTPRE-202ENST00000306042 FHOD3Q2V2M9 1422 aa12.88□□□□□ -0.35
PTPRE-202ENST00000306042 LAMC3Q9Y6N6 1575 aa12.88□□□□□ -0.35
PTPRE-202ENST00000306042 IGF1RP08069 1367 aa12.88□□□□□ -0.35
PTPRE-202ENST00000306042 NEFMP07197 916 aa12.87□□□□□ -0.35
PTPRE-202ENST00000306042 GGT6Q6P531 493 aa12.87□□□□□ -0.35
PTPRE-202ENST00000306042 TOPBP1Q92547 1522 aa12.87□□□□□ -0.35
PTPRE-202ENST00000306042 KANK1Q14678 1352 aa12.86□□□□□ -0.35
PTPRE-202ENST00000306042 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
PTPRE-202ENST00000306042 RGL3Q3MIN7 710 aa12.85□□□□□ -0.35
PTPRE-202ENST00000306042 SCAF1Q9H7N4 1312 aaKnown RBP12.84□□□□□ -0.35
PTPRE-202ENST00000306042 VPS8Q8N3P4 1428 aa12.83□□□□□ -0.36
PTPRE-202ENST00000306042 FAM69CQ0P6D2 419 aa12.83□□□□□ -0.36
PTPRE-202ENST00000306042 RUSC2Q8N2Y8 1516 aa12.82□□□□□ -0.36
PTPRE-202ENST00000306042 ANP32CO43423 234 aa12.81□□□□□ -0.36
PTPRE-202ENST00000306042 POLA1P09884 1462 aaPredicted RBP12.81□□□□□ -0.36
PTPRE-202ENST00000306042 ARHGAP35Q9NRY4 1499 aa12.8□□□□□ -0.36
PTPRE-202ENST00000306042 HDGFP51858 240 aaKnown RBP12.79□□□□□ -0.36
PTPRE-202ENST00000306042 CCDC18Q5T9S5 1454 aa12.78□□□□□ -0.36
PTPRE-202ENST00000306042 DNMBPQ6XZF7 1577 aa12.78□□□□□ -0.36
PTPRE-202ENST00000306042 SPAG9O60271 1321 aaKnown RBP12.77□□□□□ -0.36
PTPRE-202ENST00000306042 DIEXFQ68CQ4 756 aaKnown RBP12.77□□□□□ -0.37
PTPRE-202ENST00000306042 SNAPC4Q5SXM2 1469 aa12.76□□□□□ -0.37
PTPRE-202ENST00000306042 HNRNPMP52272 730 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTPRE-202ENST00000306042 KANK4Q5T7N3 995 aaPredicted RBP12.75□□□□□ -0.37
PTPRE-202ENST00000306042 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
PTPRE-202ENST00000306042 RSPH4AQ5TD94 716 aa12.75□□□□□ -0.37
PTPRE-202ENST00000306042 KIF3BO15066 747 aa12.74□□□□□ -0.37
PTPRE-202ENST00000306042 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
PTPRE-202ENST00000306042 CUX1P39880 1505 aa12.73□□□□□ -0.37
PTPRE-202ENST00000306042 HAP1P54257 671 aaPredicted RBP12.72□□□□□ -0.37
PTPRE-202ENST00000306042 PEG3Q9GZU2 1588 aa12.72□□□□□ -0.37
PTPRE-202ENST00000306042 ANKRD30AQ9BXX3 1397 aa12.7□□□□□ -0.38
PTPRE-202ENST00000306042 ZNF316A6NFI3 1004 aaPredicted RBP12.7□□□□□ -0.38
PTPRE-202ENST00000306042 SYNJ1O43426 1573 aa12.7□□□□□ -0.38
PTPRE-202ENST00000306042 POGKQ9P215 609 aa12.7□□□□□ -0.38
PTPRE-202ENST00000306042 WASHC2CQ9Y4E1 1318 aa12.68□□□□□ -0.38
PTPRE-202ENST00000306042 ZBTB7CA1YPR0 619 aa12.68□□□□□ -0.38
PTPRE-202ENST00000306042 TMC1Q8TDI8 760 aa12.67□□□□□ -0.38
PTPRE-202ENST00000306042 TOP2BQ02880 1626 aa12.67□□□□□ -0.38
PTPRE-202ENST00000306042 EIF4G2P78344 907 aaKnown RBP eCLIP12.64□□□□□ -0.39
PTPRE-202ENST00000306042 LMOD2Q6P5Q4 547 aa12.64□□□□□ -0.39
PTPRE-202ENST00000306042 NUP155O75694 1391 aa12.63□□□□□ -0.39
PTPRE-202ENST00000306042 A0A0G2JS52 829 aa12.63□□□□□ -0.39
PTPRE-202ENST00000306042 PKD2Q13563 968 aa12.63□□□□□ -0.39
PTPRE-202ENST00000306042 URB2Q14146 1524 aaKnown RBP12.63□□□□□ -0.39
PTPRE-202ENST00000306042 ABCA10Q8WWZ4 1543 aa12.62□□□□□ -0.39
PTPRE-202ENST00000306042 PRDM2Q13029 1718 aa12.62□□□□□ -0.39
PTPRE-202ENST00000306042 CARD11Q9BXL7 1154 aa12.62□□□□□ -0.39
PTPRE-202ENST00000306042 EID1Q9Y6B2 187 aa12.61□□□□□ -0.39
PTPRE-202ENST00000306042 SYNJ2O15056 1496 aa12.61□□□□□ -0.39
PTPRE-202ENST00000306042 CDCA8Q53HL2 280 aa12.61□□□□□ -0.39
PTPRE-202ENST00000306042 DCAF11Q8TEB1 546 aa12.6□□□□□ -0.39
PTPRE-202ENST00000306042 MAGI1Q96QZ7 1491 aaPredicted RBP12.59□□□□□ -0.39
PTPRE-202ENST00000306042 DDX10Q13206 875 aaKnown RBP12.57□□□□□ -0.4
PTPRE-202ENST00000306042 SETD5Q9C0A6 1442 aa12.57□□□□□ -0.4
PTPRE-202ENST00000306042 CANXP27824 592 aaKnown RBP12.57□□□□□ -0.4
PTPRE-202ENST00000306042 KIAA0586Q9BVV6 1533 aa12.57□□□□□ -0.4
PTPRE-202ENST00000306042 ZNF608Q9ULD9 1512 aaPredicted RBP12.57□□□□□ -0.4
PTPRE-202ENST00000306042 SIN3AQ96ST3 1273 aa12.55□□□□□ -0.4
PTPRE-202ENST00000306042 HIRIP3Q9BW71 556 aaPredicted RBP12.55□□□□□ -0.4
PTPRE-202ENST00000306042 ZBTB47Q9UFB7 747 aaPredicted RBP12.55□□□□□ -0.4
PTPRE-202ENST00000306042 FOXD1Q16676 465 aa12.54□□□□□ -0.4
PTPRE-202ENST00000306042 STK26Q9P289 416 aa12.54□□□□□ -0.4
PTPRE-202ENST00000306042 ERICH3Q5RHP9 1530 aa12.54□□□□□ -0.4
PTPRE-202ENST00000306042 SAFB2Q14151 953 aaKnown RBP eCLIP12.53□□□□□ -0.4
PTPRE-202ENST00000306042 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
PTPRE-202ENST00000306042 ERICH6Q7L0X2 663 aa12.52□□□□□ -0.4
PTPRE-202ENST00000306042 MPHOSPH9Q99550 1183 aa12.52□□□□□ -0.4
PTPRE-202ENST00000306042 CLSPNQ9HAW4 1339 aa12.52□□□□□ -0.41
PTPRE-202ENST00000306042 WDR43Q15061 677 aaKnown RBP eCLIP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms