RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TOP2AP11388 1531 aaKnown RBP6.91□□□□□ -1.3
SCN1A-201ENST00000303395 L1TD1Q5T7N2 865 aaKnown RBP6.91□□□□□ -1.3
SCN1A-201ENST00000303395 CCNB3Q8WWL7 1395 aa6.9□□□□□ -1.31
SCN1A-201ENST00000303395 PPP4R2Q9NY27 417 aa6.9□□□□□ -1.31
SCN1A-201ENST00000303395 SCAF1Q9H7N4 1312 aaKnown RBP6.89□□□□□ -1.31
SCN1A-201ENST00000303395 ISY1Q9ULR0 285 aaKnown RBP6.89□□□□□ -1.31
SCN1A-201ENST00000303395 GOLGA6L22H0YM25 854 aa6.88□□□□□ -1.31
SCN1A-201ENST00000303395 NCBP3Q53F19 620 aaKnown RBP6.88□□□□□ -1.31
SCN1A-201ENST00000303395 FANCIQ9NVI1 1328 aa6.88□□□□□ -1.31
SCN1A-201ENST00000303395 HAP1P54257 671 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-201ENST00000303395 CCDC18Q5T9S5 1454 aa6.87□□□□□ -1.31
SCN1A-201ENST00000303395 ERICH3Q5RHP9 1530 aa6.87□□□□□ -1.31
SCN1A-201ENST00000303395 LOC105371045A0A1W2PR82 267 aa6.87□□□□□ -1.31
SCN1A-201ENST00000303395 SCRIBQ14160 1630 aa6.87□□□□□ -1.31
SCN1A-201ENST00000303395 PDE3BQ13370 1112 aa6.86□□□□□ -1.31
SCN1A-201ENST00000303395 STAC3Q96MF2 364 aa6.86□□□□□ -1.31
SCN1A-201ENST00000303395 NPM2Q86SE8 214 aaKnown RBP6.86□□□□□ -1.31
SCN1A-201ENST00000303395 FMN1Q68DA7 1419 aa6.85□□□□□ -1.31
SCN1A-201ENST00000303395 KIF21BO75037 1637 aa6.85□□□□□ -1.31
SCN1A-201ENST00000303395 KRI1Q8N9T8 703 aaKnown RBP6.85□□□□□ -1.31
SCN1A-201ENST00000303395 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.85□□□□□ -1.31
SCN1A-201ENST00000303395 MTERF4Q7Z6M4 381 aaKnown RBP6.84□□□□□ -1.31
SCN1A-201ENST00000303395 ZRSR1Q15695 479 aaKnown RBP6.84□□□□□ -1.31
SCN1A-201ENST00000303395 MAP3K1Q13233 1512 aa6.84□□□□□ -1.31
SCN1A-201ENST00000303395 ITGAEP38570 1179 aa6.83□□□□□ -1.32
SCN1A-201ENST00000303395 EIF4G2P78344 907 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-201ENST00000303395 PRM3Q9NNZ6 103 aa6.83□□□□□ -1.32
SCN1A-201ENST00000303395 ABCC8Q09428 1581 aa6.83□□□□□ -1.32
SCN1A-201ENST00000303395 TULP1O00294 542 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-201ENST00000303395 RSPH6AQ9H0K4 717 aa6.83□□□□□ -1.32
SCN1A-201ENST00000303395 CHMP4AQ9BY43 222 aa6.83□□□□□ -1.32
SCN1A-201ENST00000303395 TCERG1O14776 1098 aaKnown RBP6.82□□□□□ -1.32
SCN1A-201ENST00000303395 EIF3AQ14152 1382 aaKnown RBP6.82□□□□□ -1.32
SCN1A-201ENST00000303395 PPARGC1BQ86YN6 1023 aaKnown RBP6.82□□□□□ -1.32
SCN1A-201ENST00000303395 SCAPERQ9BY12 1400 aa6.81□□□□□ -1.32
SCN1A-201ENST00000303395 CCDC136Q96JN2 1154 aa6.81□□□□□ -1.32
SCN1A-201ENST00000303395 CUX1P39880 1505 aa6.81□□□□□ -1.32
SCN1A-201ENST00000303395 ESF1Q9H501 851 aaKnown RBP6.81□□□□□ -1.32
SCN1A-201ENST00000303395 MAP7D2Q96T17 732 aa6.8□□□□□ -1.32
SCN1A-201ENST00000303395 LAS1LQ9Y4W2 734 aaKnown RBP6.8□□□□□ -1.32
SCN1A-201ENST00000303395 NOP58Q9Y2X3 529 aaKnown RBP6.79□□□□□ -1.32
SCN1A-201ENST00000303395 SETD5Q9C0A6 1442 aa6.79□□□□□ -1.32
SCN1A-201ENST00000303395 MTUS2Q5JR59 1369 aa6.78□□□□□ -1.32
SCN1A-201ENST00000303395 NRDCO43847 1150 aa6.78□□□□□ -1.32
SCN1A-201ENST00000303395 A0A0G2JS52 829 aa6.78□□□□□ -1.32
SCN1A-201ENST00000303395 ARHGAP35Q9NRY4 1499 aa6.78□□□□□ -1.32
SCN1A-201ENST00000303395 FKBP8Q14318 412 aa6.77□□□□□ -1.33
SCN1A-201ENST00000303395 NINLQ9Y2I6 1382 aa6.77□□□□□ -1.33
SCN1A-201ENST00000303395 PNNQ9H307 717 aaKnown RBP6.77□□□□□ -1.33
SCN1A-201ENST00000303395 AKNAQ7Z591 1439 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 WASHC2AQ641Q2 1341 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 WASHC2CQ9Y4E1 1318 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 RALBP1Q15311 655 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 EFCAB5A4FU69 1503 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 CLSTN1O94985 981 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 DHX8Q14562 1220 aaKnown RBP6.76□□□□□ -1.33
SCN1A-201ENST00000303395 CHMP4CQ96CF2 233 aa6.76□□□□□ -1.33
SCN1A-201ENST00000303395 GOLGA6L6A8MZA4 724 aa6.75□□□□□ -1.33
SCN1A-201ENST00000303395 HNRNPUQ00839 825 aaKnown RBP eCLIP6.75□□□□□ -1.33
SCN1A-201ENST00000303395 FAM50AQ14320 339 aaKnown RBP6.75□□□□□ -1.33
SCN1A-201ENST00000303395 RSPH4AQ5TD94 716 aa6.75□□□□□ -1.33
SCN1A-201ENST00000303395 ZNF326Q5BKZ1 582 aaKnown RBP6.74□□□□□ -1.33
SCN1A-201ENST00000303395 CNTLNQ9NXG0 1405 aa6.74□□□□□ -1.33
SCN1A-201ENST00000303395 MYH16Q9H6N6 1097 aa6.74□□□□□ -1.33
SCN1A-201ENST00000303395 ANKRD30AQ9BXX3 1397 aa6.74□□□□□ -1.33
SCN1A-201ENST00000303395 SUPT16HQ9Y5B9 1047 aaKnown RBP6.73□□□□□ -1.33
SCN1A-201ENST00000303395 CALRP27797 417 aaKnown RBP6.72□□□□□ -1.33
SCN1A-201ENST00000303395 PDIA4P13667 645 aaKnown RBP6.72□□□□□ -1.33
SCN1A-201ENST00000303395 SKOR2Q2VWA4 1001 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-201ENST00000303395 PLEKHH2Q8IVE3 1493 aa6.72□□□□□ -1.33
SCN1A-201ENST00000303395 TMC1Q8TDI8 760 aa6.72□□□□□ -1.33
SCN1A-201ENST00000303395 CASC1Q6TDU7 716 aa6.71□□□□□ -1.33
SCN1A-201ENST00000303395 ZBED9Q6R2W3 1325 aa6.71□□□□□ -1.33
SCN1A-201ENST00000303395 CHAF1AQ13111 956 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-201ENST00000303395 MRS2Q9HD23 443 aa6.71□□□□□ -1.34
SCN1A-201ENST00000303395 MAPK8IP3Q9UPT6 1336 aa6.71□□□□□ -1.34
SCN1A-201ENST00000303395 MIA2Q96PC5 1412 aa6.71□□□□□ -1.34
SCN1A-201ENST00000303395 TRIM52Q96A61 297 aa6.71□□□□□ -1.34
SCN1A-201ENST00000303395 KIAA2012Q0VF49 1180 aa6.7□□□□□ -1.34
SCN1A-201ENST00000303395 DNTTIP2Q5QJE6 756 aaKnown RBP6.7□□□□□ -1.34
SCN1A-201ENST00000303395 PKNOX2Q96KN3 472 aa6.7□□□□□ -1.34
SCN1A-201ENST00000303395 NPHP1O15259 732 aa6.7□□□□□ -1.34
SCN1A-201ENST00000303395 NOC3LQ8WTT2 800 aaKnown RBP6.7□□□□□ -1.34
SCN1A-201ENST00000303395 SYAP1Q96A49 352 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-201ENST00000303395 SMARCA4P51532 1647 aa6.7□□□□□ -1.34
SCN1A-201ENST00000303395 STAG3Q9UJ98 1225 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 CCDC144AA2RUR9 1427 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 RRBP1Q9P2E9 1410 aaKnown RBP6.69□□□□□ -1.34
SCN1A-201ENST00000303395 INSRP06213 1382 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 HDAC5Q9UQL6 1122 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 MIER1Q8N108 512 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 KLHL34Q8N239 644 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 GBP4Q96PP9 640 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 CALD1Q05682 793 aaKnown RBP6.69□□□□□ -1.34
SCN1A-201ENST00000303395 CFAP53Q96M91 514 aa6.69□□□□□ -1.34
SCN1A-201ENST00000303395 PTMAP06454 111 aaKnown RBP6.68□□□□□ -1.34
SCN1A-201ENST00000303395 WDR43Q15061 677 aaKnown RBP eCLIP6.68□□□□□ -1.34
SCN1A-201ENST00000303395 IPO9Q96P70 1041 aaKnown RBP6.68□□□□□ -1.34
SCN1A-201ENST00000303395 AQRO60306 1485 aaKnown RBP eCLIP6.68□□□□□ -1.34
SCN1A-201ENST00000303395 DDX11L8A8MPP1 907 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms