RNA–Protein interactions for RNA: ENST00000302316.12

CCDC7-202, Transcript of coiled-coil domain containing 7, humanhuman

TSL 1 (best)

Gene CCDC7, Length 2,129 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-202ENST00000302316 ARHGAP35Q9NRY4 1499 aa20.48■□□□□ 0.87
CCDC7-202ENST00000302316 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
CCDC7-202ENST00000302316 VPS8Q8N3P4 1428 aa20.46■□□□□ 0.87
CCDC7-202ENST00000302316 CHMP7Q8WUX9 453 aaPredicted RBP20.44■□□□□ 0.86
CCDC7-202ENST00000302316 EFCAB5A4FU69 1503 aa20.41■□□□□ 0.86
CCDC7-202ENST00000302316 FBLN2P98095 1184 aa20.41■□□□□ 0.86
CCDC7-202ENST00000302316 IQGAP2Q13576 1575 aa20.4■□□□□ 0.86
CCDC7-202ENST00000302316 CEP170Q5SW79 1584 aa20.36■□□□□ 0.85
CCDC7-202ENST00000302316 KIAA0586Q9BVV6 1533 aa20.35■□□□□ 0.85
CCDC7-202ENST00000302316 SAMD9Q5K651 1589 aa20.35■□□□□ 0.85
CCDC7-202ENST00000302316 NUP160Q12769 1436 aa20.32■□□□□ 0.84
CCDC7-202ENST00000302316 FHOD3Q2V2M9 1422 aa20.32■□□□□ 0.84
CCDC7-202ENST00000302316 P3H3Q8IVL6 736 aa20.32■□□□□ 0.84
CCDC7-202ENST00000302316 CHD1O14646 1710 aa20.31■□□□□ 0.84
CCDC7-202ENST00000302316 PPARGC1BQ86YN6 1023 aaKnown RBP20.29■□□□□ 0.84
CCDC7-202ENST00000302316 UGGT2Q9NYU1 1516 aa20.29■□□□□ 0.84
CCDC7-202ENST00000302316 APLP2Q06481 763 aa20.25■□□□□ 0.83
CCDC7-202ENST00000302316 PCF11O94913 1555 aaKnown RBP20.22■□□□□ 0.83
CCDC7-202ENST00000302316 FMN1Q68DA7 1419 aa20.22■□□□□ 0.83
CCDC7-202ENST00000302316 KIAA0556O60303 1618 aa20.2■□□□□ 0.82
CCDC7-202ENST00000302316 DISP1Q96F81 1524 aa20.19■□□□□ 0.82
CCDC7-202ENST00000302316 TRIM26Q12899 539 aaPredicted RBP20.19■□□□□ 0.82
CCDC7-202ENST00000302316 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
CCDC7-202ENST00000302316 FYCO1Q9BQS8 1478 aa20.17■□□□□ 0.82
CCDC7-202ENST00000302316 PCGF6Q9BYE7 350 aa20.17■□□□□ 0.82
CCDC7-202ENST00000302316 CASKIN1Q8WXD9 1431 aa20.16■□□□□ 0.82
CCDC7-202ENST00000302316 JPH4Q96JJ6 628 aa20.15■□□□□ 0.82
CCDC7-202ENST00000302316 CARMIL2Q6F5E8 1435 aa20.12■□□□□ 0.81
CCDC7-202ENST00000302316 ATP1B4Q9UN42 357 aaPredicted RBP20.11■□□□□ 0.81
CCDC7-202ENST00000302316 TIAM1Q13009 1591 aa20.11■□□□□ 0.81
CCDC7-202ENST00000302316 MAP3K1Q13233 1512 aa20.1■□□□□ 0.81
CCDC7-202ENST00000302316 CFAP43Q8NDM7 1665 aa20.09■□□□□ 0.81
CCDC7-202ENST00000302316 CLASP1Q7Z460 1538 aa20.07■□□□□ 0.8
CCDC7-202ENST00000302316 SHROOM2Q13796 1616 aa20.06■□□□□ 0.8
CCDC7-202ENST00000302316 KANK4Q5T7N3 995 aaPredicted RBP20.05■□□□□ 0.8
CCDC7-202ENST00000302316 PRG4Q92954 1404 aaPredicted RBP20.05■□□□□ 0.8
CCDC7-202ENST00000302316 HECW1Q76N89 1606 aa20.04■□□□□ 0.8
CCDC7-202ENST00000302316 LRRIQ1Q96JM4 1722 aa20.01■□□□□ 0.79
CCDC7-202ENST00000302316 LRRC9Q6ZRR7 1453 aa20■□□□□ 0.79
CCDC7-202ENST00000302316 RAPGEF6Q8TEU7 1601 aa19.98■□□□□ 0.79
CCDC7-202ENST00000302316 CCDC18Q5T9S5 1454 aa19.98■□□□□ 0.79
CCDC7-202ENST00000302316 EPRSP07814 1512 aaKnown RBP19.95■□□□□ 0.78
CCDC7-202ENST00000302316 PLB1Q6P1J6 1458 aa19.94■□□□□ 0.78
CCDC7-202ENST00000302316 ERCC6L2Q5T890 1561 aa19.93■□□□□ 0.78
CCDC7-202ENST00000302316 NUP153P49790 1475 aaKnown RBP19.93■□□□□ 0.78
CCDC7-202ENST00000302316 CDK13Q14004 1512 aaKnown RBP19.92■□□□□ 0.78
CCDC7-202ENST00000302316 PTPRGP23470 1445 aa19.91■□□□□ 0.78
CCDC7-202ENST00000302316 MTUS2Q5JR59 1369 aa19.9■□□□□ 0.78
CCDC7-202ENST00000302316 OSCARQ8IYS5 282 aa19.9■□□□□ 0.78
CCDC7-202ENST00000302316 ABCA8O94911 1581 aa19.89■□□□□ 0.78
CCDC7-202ENST00000302316 ARID3CA6NKF2 412 aa19.88■□□□□ 0.77
CCDC7-202ENST00000302316 EHBP1L1Q8N3D4 1523 aa19.88■□□□□ 0.77
CCDC7-202ENST00000302316 MAGI3Q5TCQ9 1506 aa19.85■□□□□ 0.77
CCDC7-202ENST00000302316 RRBP1Q9P2E9 1410 aaKnown RBP19.81■□□□□ 0.76
CCDC7-202ENST00000302316 SUPT6HQ7KZ85 1726 aaKnown RBP19.81■□□□□ 0.76
CCDC7-202ENST00000302316 PHLDB1Q86UU1 1377 aa19.81■□□□□ 0.76
CCDC7-202ENST00000302316 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.81■□□□□ 0.76
CCDC7-202ENST00000302316 HNRNPUL2Q1KMD3 747 aaKnown RBP19.81■□□□□ 0.76
CCDC7-202ENST00000302316 UACAQ9BZF9 1416 aa19.8■□□□□ 0.76
CCDC7-202ENST00000302316 NCOA2Q15596 1464 aa19.78■□□□□ 0.76
CCDC7-202ENST00000302316 CDK11AQ9UQ88 783 aaPredicted RBP19.77■□□□□ 0.76
CCDC7-202ENST00000302316 CCNB3Q8WWL7 1395 aa19.77■□□□□ 0.76
CCDC7-202ENST00000302316 ABCC2Q92887 1545 aa19.76■□□□□ 0.75
CCDC7-202ENST00000302316 ATP10BO94823 1461 aa19.75■□□□□ 0.75
CCDC7-202ENST00000302316 ARHGEF11O15085 1522 aa19.74■□□□□ 0.75
CCDC7-202ENST00000302316 TROQ12816 1431 aaPredicted RBP19.72■□□□□ 0.75
CCDC7-202ENST00000302316 MYOM3Q5VTT5 1437 aa19.7■□□□□ 0.74
CCDC7-202ENST00000302316 UHRF1BP1LA0JNW5 1464 aa19.69■□□□□ 0.74
CCDC7-202ENST00000302316 FGD6Q6ZV73 1430 aa19.69■□□□□ 0.74
CCDC7-202ENST00000302316 ADCY10Q96PN6 1610 aa19.66■□□□□ 0.74
CCDC7-202ENST00000302316 PLEKHD1A6NEE1 506 aa19.66■□□□□ 0.74
CCDC7-202ENST00000302316 KIF14Q15058 1648 aa19.65■□□□□ 0.74
CCDC7-202ENST00000302316 FAM50AQ14320 339 aaKnown RBP19.64■□□□□ 0.74
CCDC7-202ENST00000302316 ZCCHC11Q5TAX3 1644 aaKnown RBP19.63■□□□□ 0.73
CCDC7-202ENST00000302316 KDM5BQ9UGL1 1544 aa19.62■□□□□ 0.73
CCDC7-202ENST00000302316 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.61■□□□□ 0.73
CCDC7-202ENST00000302316 PTPN23Q9H3S7 1636 aa19.6■□□□□ 0.73
CCDC7-202ENST00000302316 ITGAEP38570 1179 aa19.6■□□□□ 0.73
CCDC7-202ENST00000302316 MIA2Q96PC5 1412 aa19.58■□□□□ 0.73
CCDC7-202ENST00000302316 ITSN2Q9NZM3 1697 aa19.57■□□□□ 0.72
CCDC7-202ENST00000302316 TCOF1Q13428 1488 aaKnown RBP19.55■□□□□ 0.72
CCDC7-202ENST00000302316 ABCC10Q5T3U5 1492 aa19.55■□□□□ 0.72
CCDC7-202ENST00000302316 GPATCH8Q9UKJ3 1502 aaKnown RBP19.53■□□□□ 0.72
CCDC7-202ENST00000302316 RIMBP3CA6NJZ7 1639 aa19.51■□□□□ 0.71
CCDC7-202ENST00000302316 RIMBP3BA6NNM3 1639 aa19.51■□□□□ 0.71
CCDC7-202ENST00000302316 RIMBP3Q9UFD9 1639 aa19.51■□□□□ 0.71
CCDC7-202ENST00000302316 CDC42BPAQ5VT25 1732 aa19.5■□□□□ 0.71
CCDC7-202ENST00000302316 CFDP1Q9UEE9 299 aaPredicted RBP19.48■□□□□ 0.71
CCDC7-202ENST00000302316 HRCP23327 699 aa19.48■□□□□ 0.71
CCDC7-202ENST00000302316 TTC37Q6PGP7 1564 aa19.47■□□□□ 0.71
CCDC7-202ENST00000302316 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.47■□□□□ 0.71
CCDC7-202ENST00000302316 WDR7Q9Y4E6 1490 aa19.46■□□□□ 0.71
CCDC7-202ENST00000302316 CAMSAP2Q08AD1 1489 aa19.45■□□□□ 0.7
CCDC7-202ENST00000302316 KCNH8Q96L42 1107 aa19.45■□□□□ 0.7
CCDC7-202ENST00000302316 PREX2Q70Z35 1606 aa19.44■□□□□ 0.7
CCDC7-202ENST00000302316 NPM1P06748 294 aaKnown RBP eCLIP19.44■□□□□ 0.7
CCDC7-202ENST00000302316 CCER1Q8TC90 406 aaPredicted RBP19.43■□□□□ 0.7
CCDC7-202ENST00000302316 ZNF644Q9H582 1327 aaPredicted RBP19.43■□□□□ 0.7
CCDC7-202ENST00000302316 PTPRKQ15262 1439 aa19.43■□□□□ 0.7
CCDC7-202ENST00000302316 ASXL2Q76L83 1435 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms