RNA–Protein interactions for RNA: ENST00000299855.9

MMP3-201, Transcript of matrix metallopeptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MMP3, Length 2,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3-201ENST00000299855 NESP48681 1621 aa13.41□□□□□ -0.26
MMP3-201ENST00000299855 NEFLP07196 543 aa13.41□□□□□ -0.26
MMP3-201ENST00000299855 NBR1Q14596 966 aa13.41□□□□□ -0.26
MMP3-201ENST00000299855 TAF7LQ5H9L4 462 aa13.41□□□□□ -0.26
MMP3-201ENST00000299855 WIZO95785 1651 aa13.4□□□□□ -0.27
MMP3-201ENST00000299855 RSF1Q96T23 1441 aaPredicted RBP13.39□□□□□ -0.27
MMP3-201ENST00000299855 NPM3O75607 178 aaKnown RBP13.37□□□□□ -0.27
MMP3-201ENST00000299855 DIEXFQ68CQ4 756 aaKnown RBP13.37□□□□□ -0.27
MMP3-201ENST00000299855 LAMC3Q9Y6N6 1575 aa13.36□□□□□ -0.27
MMP3-201ENST00000299855 IGSF3O75054 1194 aa13.35□□□□□ -0.27
MMP3-201ENST00000299855 CCER1Q8TC90 406 aaPredicted RBP13.32□□□□□ -0.28
MMP3-201ENST00000299855 PPP6R1Q9UPN7 881 aa13.32□□□□□ -0.28
MMP3-201ENST00000299855 DHX37Q8IY37 1157 aaKnown RBP13.3□□□□□ -0.28
MMP3-201ENST00000299855 PDS5BQ9NTI5 1447 aa13.29□□□□□ -0.28
MMP3-201ENST00000299855 DNAJC5Q9H3Z4 198 aa13.29□□□□□ -0.28
MMP3-201ENST00000299855 THOC2Q8NI27 1593 aaKnown RBP13.27□□□□□ -0.28
MMP3-201ENST00000299855 PUS7Q96PZ0 661 aaKnown RBP13.27□□□□□ -0.28
MMP3-201ENST00000299855 CADPSQ9ULU8 1353 aa13.27□□□□□ -0.29
MMP3-201ENST00000299855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.25□□□□□ -0.29
MMP3-201ENST00000299855 KIF21AQ7Z4S6 1674 aa13.24□□□□□ -0.29
MMP3-201ENST00000299855 ZBTB7CA1YPR0 619 aa13.22□□□□□ -0.29
MMP3-201ENST00000299855 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.22□□□□□ -0.29
MMP3-201ENST00000299855 TOP2AP11388 1531 aaKnown RBP13.21□□□□□ -0.3
MMP3-201ENST00000299855 WRNQ14191 1432 aaPredicted RBP eCLIP13.19□□□□□ -0.3
MMP3-201ENST00000299855 PAXIP1Q6ZW49 1069 aaPredicted RBP13.19□□□□□ -0.3
MMP3-201ENST00000299855 ZNF316A6NFI3 1004 aaPredicted RBP13.18□□□□□ -0.3
MMP3-201ENST00000299855 MRC2Q9UBG0 1479 aa13.17□□□□□ -0.3
MMP3-201ENST00000299855 PKNOX2Q96KN3 472 aa13.16□□□□□ -0.3
MMP3-201ENST00000299855 FOXD4L1Q9NU39 408 aa13.15□□□□□ -0.3
MMP3-201ENST00000299855 CFAP44Q96MT7 982 aa13.15□□□□□ -0.3
MMP3-201ENST00000299855 CFTRP13569 1480 aa13.14□□□□□ -0.31
MMP3-201ENST00000299855 SENP3Q9H4L4 574 aaPredicted RBP13.13□□□□□ -0.31
MMP3-201ENST00000299855 CEP164Q9UPV0 1460 aa13.13□□□□□ -0.31
MMP3-201ENST00000299855 WDR62O43379 1518 aa13.12□□□□□ -0.31
MMP3-201ENST00000299855 FANCD2Q9BXW9 1451 aa13.12□□□□□ -0.31
MMP3-201ENST00000299855 CLSPNQ9HAW4 1339 aa13.11□□□□□ -0.31
MMP3-201ENST00000299855 BBXQ8WY36 941 aaPredicted RBP13.1□□□□□ -0.31
MMP3-201ENST00000299855 BCCIPQ9P287 314 aaKnown RBP eCLIP13.09□□□□□ -0.31
MMP3-201ENST00000299855 POLR3GLQ9BT43 218 aa13.08□□□□□ -0.31
MMP3-201ENST00000299855 CCDC88BA6NC98 1476 aa13.08□□□□□ -0.32
MMP3-201ENST00000299855 TSHZ2Q9NRE2 1034 aa13.07□□□□□ -0.32
MMP3-201ENST00000299855 PRDM2Q13029 1718 aa13.01□□□□□ -0.33
MMP3-201ENST00000299855 BCL11BQ9C0K0 894 aaPredicted RBP13□□□□□ -0.33
MMP3-201ENST00000299855 URB2Q14146 1524 aaKnown RBP13□□□□□ -0.33
MMP3-201ENST00000299855 TNIKQ9UKE5 1360 aa13□□□□□ -0.33
MMP3-201ENST00000299855 ARID3AQ99856 593 aa13□□□□□ -0.33
MMP3-201ENST00000299855 FGD1P98174 961 aa12.99□□□□□ -0.33
MMP3-201ENST00000299855 PPP4R3CPQ6ZMV5 832 aa12.98□□□□□ -0.33
MMP3-201ENST00000299855 ZNF326Q5BKZ1 582 aaKnown RBP12.98□□□□□ -0.33
MMP3-201ENST00000299855 MIER1Q8N108 512 aa12.96□□□□□ -0.33
MMP3-201ENST00000299855 NECTIN2Q92692 538 aa12.96□□□□□ -0.33
MMP3-201ENST00000299855 CEP162Q5TB80 1403 aa12.96□□□□□ -0.34
MMP3-201ENST00000299855 EEA1Q15075 1411 aa12.95□□□□□ -0.34
MMP3-201ENST00000299855 YTHDC1Q96MU7 727 aaKnown RBP12.92□□□□□ -0.34
MMP3-201ENST00000299855 RSPH4AQ5TD94 716 aa12.91□□□□□ -0.34
MMP3-201ENST00000299855 RSPH6AQ9H0K4 717 aa12.91□□□□□ -0.34
MMP3-201ENST00000299855 ABCC8Q09428 1581 aa12.89□□□□□ -0.35
MMP3-201ENST00000299855 ZMYND15Q9H091 742 aa12.88□□□□□ -0.35
MMP3-201ENST00000299855 TOPBP1Q92547 1522 aa12.88□□□□□ -0.35
MMP3-201ENST00000299855 IFT140Q96RY7 1462 aa12.88□□□□□ -0.35
MMP3-201ENST00000299855 BRPF1P55201 1214 aaPredicted RBP12.86□□□□□ -0.35
MMP3-201ENST00000299855 DNMBPQ6XZF7 1577 aa12.85□□□□□ -0.35
MMP3-201ENST00000299855 SPRYD3Q8NCJ5 442 aa12.84□□□□□ -0.35
MMP3-201ENST00000299855 ANP32EQ9BTT0 268 aa12.84□□□□□ -0.35
MMP3-201ENST00000299855 NPM1P06748 294 aaKnown RBP eCLIP12.83□□□□□ -0.36
MMP3-201ENST00000299855 PKD2Q13563 968 aa12.83□□□□□ -0.36
MMP3-201ENST00000299855 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.82□□□□□ -0.36
MMP3-201ENST00000299855 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
MMP3-201ENST00000299855 SUPT16HQ9Y5B9 1047 aaKnown RBP12.82□□□□□ -0.36
MMP3-201ENST00000299855 ZNF608Q9ULD9 1512 aaPredicted RBP12.81□□□□□ -0.36
MMP3-201ENST00000299855 GOLGA3Q08378 1498 aa12.8□□□□□ -0.36
MMP3-201ENST00000299855 KCTD17Q8N5Z5 321 aa12.79□□□□□ -0.36
MMP3-201ENST00000299855 RAD21O60216 631 aa12.79□□□□□ -0.36
MMP3-201ENST00000299855 TRHP20396 242 aaPredicted RBP12.78□□□□□ -0.36
MMP3-201ENST00000299855 TICAM2Q86XR7 235 aa12.78□□□□□ -0.36
MMP3-201ENST00000299855 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.76□□□□□ -0.37
MMP3-201ENST00000299855 EIF4G3O43432 1585 aaKnown RBP12.75□□□□□ -0.37
MMP3-201ENST00000299855 TARBP1Q13395 1621 aaKnown RBP12.75□□□□□ -0.37
MMP3-201ENST00000299855 CLSTN1O94985 981 aa12.75□□□□□ -0.37
MMP3-201ENST00000299855 C1orf115Q9H7X2 142 aa12.75□□□□□ -0.37
MMP3-201ENST00000299855 SOGA1O94964 1423 aa12.75□□□□□ -0.37
MMP3-201ENST00000299855 POLA1P09884 1462 aaPredicted RBP12.75□□□□□ -0.37
MMP3-201ENST00000299855 RGS22Q8NE09 1264 aa12.74□□□□□ -0.37
MMP3-201ENST00000299855 AQRO60306 1485 aaKnown RBP eCLIP12.71□□□□□ -0.38
MMP3-201ENST00000299855 CUX1P39880 1505 aa12.7□□□□□ -0.38
MMP3-201ENST00000299855 RAD54L2Q9Y4B4 1467 aa12.7□□□□□ -0.38
MMP3-201ENST00000299855 PSMD1Q99460 953 aa12.69□□□□□ -0.38
MMP3-201ENST00000299855 KIF21BO75037 1637 aa12.69□□□□□ -0.38
MMP3-201ENST00000299855 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
MMP3-201ENST00000299855 ZNF592Q92610 1267 aa12.69□□□□□ -0.38
MMP3-201ENST00000299855 FGD5Q6ZNL6 1462 aa12.69□□□□□ -0.38
MMP3-201ENST00000299855 VPS8Q8N3P4 1428 aa12.67□□□□□ -0.38
MMP3-201ENST00000299855 RBM25P49756 843 aaKnown RBP12.67□□□□□ -0.38
MMP3-201ENST00000299855 WDR97A6NE52 1622 aa12.67□□□□□ -0.38
MMP3-201ENST00000299855 MTMR7Q9Y216 660 aa12.66□□□□□ -0.38
MMP3-201ENST00000299855 NAP1L5Q96NT1 182 aaPredicted RBP12.66□□□□□ -0.38
MMP3-201ENST00000299855 TDRD9Q8NDG6 1382 aaKnown RBP12.65□□□□□ -0.38
MMP3-201ENST00000299855 CCDC136Q96JN2 1154 aa12.65□□□□□ -0.38
MMP3-201ENST00000299855 RUSC2Q8N2Y8 1516 aa12.64□□□□□ -0.39
MMP3-201ENST00000299855 CHD1O14646 1710 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms