RNA–Protein interactions for RNA: ENST00000299855.9

MMP3-201, Transcript of matrix metallopeptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MMP3, Length 2,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3-201ENST00000299855 SLC24A1O60721 1099 aa18.11■□□□□ 0.49
MMP3-201ENST00000299855 NISCHQ9Y2I1 1504 aa17.54■□□□□ 0.4
MMP3-201ENST00000299855 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
MMP3-201ENST00000299855 DAXXQ9UER7 740 aaPredicted RBP16.59■□□□□ 0.25
MMP3-201ENST00000299855 EHMT2Q96KQ7 1210 aa16.52■□□□□ 0.24
MMP3-201ENST00000299855 TTBK1Q5TCY1 1321 aaPredicted RBP16.33■□□□□ 0.21
MMP3-201ENST00000299855 MYT1Q01538 1121 aa16.31■□□□□ 0.2
MMP3-201ENST00000299855 NCBP3Q53F19 620 aaKnown RBP16.2■□□□□ 0.18
MMP3-201ENST00000299855 RTN4Q9NQC3 1192 aaKnown RBP16.09■□□□□ 0.17
MMP3-201ENST00000299855 PLPPR3Q6T4P5 718 aa16.05■□□□□ 0.16
MMP3-201ENST00000299855 PELP1Q8IZL8 1130 aaKnown RBP16.03■□□□□ 0.16
MMP3-201ENST00000299855 AMER1Q5JTC6 1135 aaPredicted RBP15.94■□□□□ 0.14
MMP3-201ENST00000299855 APLP2Q06481 763 aa15.87■□□□□ 0.13
MMP3-201ENST00000299855 ERICH6Q7L0X2 663 aa15.83■□□□□ 0.12
MMP3-201ENST00000299855 CCDC180Q9P1Z9 1646 aa15.71■□□□□ 0.11
MMP3-201ENST00000299855 ARXQ96QS3 562 aa15.67■□□□□ 0.1
MMP3-201ENST00000299855 PRKCSHP14314 528 aaPredicted RBP15.62■□□□□ 0.09
MMP3-201ENST00000299855 ABCC9O60706 1549 aa15.59■□□□□ 0.09
MMP3-201ENST00000299855 AEBP2Q6ZN18 517 aaPredicted RBP15.58■□□□□ 0.08
MMP3-201ENST00000299855 KCNA4P22459 653 aa15.44■□□□□ 0.06
MMP3-201ENST00000299855 CSRNP3Q8WYN3 585 aa15.35■□□□□ 0.05
MMP3-201ENST00000299855 RANGAP1P46060 587 aaPredicted RBP15.31■□□□□ 0.04
MMP3-201ENST00000299855 TIMELESSQ9UNS1 1208 aa15.26■□□□□ 0.03
MMP3-201ENST00000299855 HOMEZQ8IX15 550 aa15.13■□□□□ 0.01
MMP3-201ENST00000299855 TAOK2Q9UL54 1235 aa15.07■□□□□ 0
MMP3-201ENST00000299855 TULP1O00294 542 aaPredicted RBP15.04■□□□□ -0
MMP3-201ENST00000299855 PHF23Q9BUL5 403 aaPredicted RBP14.97□□□□□ -0.01
MMP3-201ENST00000299855 BCANQ96GW7 911 aa14.96□□□□□ -0.01
MMP3-201ENST00000299855 RB1CC1Q8TDY2 1594 aa14.91□□□□□ -0.02
MMP3-201ENST00000299855 EIF5BO60841 1220 aaKnown RBP14.88□□□□□ -0.03
MMP3-201ENST00000299855 NACADO15069 1562 aa14.83□□□□□ -0.04
MMP3-201ENST00000299855 TPRNQ4KMQ1 711 aa14.77□□□□□ -0.04
MMP3-201ENST00000299855 HRCP23327 699 aa14.76□□□□□ -0.05
MMP3-201ENST00000299855 DCAF8L2P0C7V8 631 aa14.74□□□□□ -0.05
MMP3-201ENST00000299855 KLHL34Q8N239 644 aa14.73□□□□□ -0.05
MMP3-201ENST00000299855 PODXL2Q9NZ53 605 aa14.72□□□□□ -0.05
MMP3-201ENST00000299855 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
MMP3-201ENST00000299855 GTF3C3Q9Y5Q9 886 aa14.64□□□□□ -0.07
MMP3-201ENST00000299855 PLCB2Q00722 1185 aa14.58□□□□□ -0.08
MMP3-201ENST00000299855 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
MMP3-201ENST00000299855 SLC4A1APQ9BWU0 796 aaKnown RBP14.57□□□□□ -0.08
MMP3-201ENST00000299855 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
MMP3-201ENST00000299855 UNC13AQ9UPW8 1703 aa14.52□□□□□ -0.08
MMP3-201ENST00000299855 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
MMP3-201ENST00000299855 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
MMP3-201ENST00000299855 NPM2Q86SE8 214 aaKnown RBP14.46□□□□□ -0.1
MMP3-201ENST00000299855 BICRAQ9NZM4 1560 aa14.44□□□□□ -0.1
MMP3-201ENST00000299855 HAP1P54257 671 aaPredicted RBP14.41□□□□□ -0.1
MMP3-201ENST00000299855 SUPT5HO00267 1087 aaKnown RBP14.4□□□□□ -0.1
MMP3-201ENST00000299855 SHROOM4Q9ULL8 1493 aa14.38□□□□□ -0.11
MMP3-201ENST00000299855 FBXO3Q9UK99 471 aa14.36□□□□□ -0.11
MMP3-201ENST00000299855 PCGF6Q9BYE7 350 aa14.31□□□□□ -0.12
MMP3-201ENST00000299855 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
MMP3-201ENST00000299855 TMEM132AQ24JP5 1023 aa14.29□□□□□ -0.12
MMP3-201ENST00000299855 C14orf37Q86TY3 774 aa14.25□□□□□ -0.13
MMP3-201ENST00000299855 PPARGC1BQ86YN6 1023 aaKnown RBP14.18□□□□□ -0.14
MMP3-201ENST00000299855 VSIG10Q8N0Z9 540 aa14.17□□□□□ -0.14
MMP3-201ENST00000299855 PLEKHG5O94827 1062 aa14.13□□□□□ -0.15
MMP3-201ENST00000299855 CC2D2AQ9P2K1 1620 aa14.09□□□□□ -0.15
MMP3-201ENST00000299855 EIF4G1Q04637 1599 aaKnown RBP14.09□□□□□ -0.15
MMP3-201ENST00000299855 ZEB1P37275 1124 aaPredicted RBP14.08□□□□□ -0.15
MMP3-201ENST00000299855 TRIM26Q12899 539 aaPredicted RBP14.07□□□□□ -0.16
MMP3-201ENST00000299855 CECR2Q9BXF3 1484 aa14.05□□□□□ -0.16
MMP3-201ENST00000299855 BCL11AQ9H165 835 aa13.93□□□□□ -0.18
MMP3-201ENST00000299855 ZBTB22O15209 634 aa13.86□□□□□ -0.19
MMP3-201ENST00000299855 LOC105371045A0A1W2PR82 267 aa13.84□□□□□ -0.19
MMP3-201ENST00000299855 SCAF1Q9H7N4 1312 aaKnown RBP13.83□□□□□ -0.2
MMP3-201ENST00000299855 KDM2AQ9Y2K7 1162 aa13.81□□□□□ -0.2
MMP3-201ENST00000299855 PDIA4P13667 645 aaKnown RBP13.78□□□□□ -0.2
MMP3-201ENST00000299855 UBTFP17480 764 aaKnown RBP13.76□□□□□ -0.21
MMP3-201ENST00000299855 FKBP8Q14318 412 aa13.76□□□□□ -0.21
MMP3-201ENST00000299855 CDK11AQ9UQ88 783 aaPredicted RBP13.71□□□□□ -0.22
MMP3-201ENST00000299855 NCAPD3P42695 1498 aa13.68□□□□□ -0.22
MMP3-201ENST00000299855 CDK11BP21127 795 aaKnown RBP13.67□□□□□ -0.22
MMP3-201ENST00000299855 SMARCA4P51532 1647 aa13.66□□□□□ -0.22
MMP3-201ENST00000299855 UBE2Q2Q8WVN8 375 aa13.66□□□□□ -0.22
MMP3-201ENST00000299855 ATAD2BQ9ULI0 1458 aa13.65□□□□□ -0.22
MMP3-201ENST00000299855 FBLN2P98095 1184 aa13.64□□□□□ -0.23
MMP3-201ENST00000299855 SMARCA2P51531 1590 aa13.63□□□□□ -0.23
MMP3-201ENST00000299855 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
MMP3-201ENST00000299855 CHMP4AQ9BY43 222 aa13.62□□□□□ -0.23
MMP3-201ENST00000299855 ACIN1Q9UKV3 1341 aaKnown RBP13.61□□□□□ -0.23
MMP3-201ENST00000299855 HMGB1P09429 215 aaKnown RBP13.61□□□□□ -0.23
MMP3-201ENST00000299855 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
MMP3-201ENST00000299855 HMGXB3Q12766 1538 aa13.59□□□□□ -0.23
MMP3-201ENST00000299855 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
MMP3-201ENST00000299855 ADRA2BP18089 450 aa13.54□□□□□ -0.24
MMP3-201ENST00000299855 PEG3Q9GZU2 1588 aa13.53□□□□□ -0.24
MMP3-201ENST00000299855 BAZ1BQ9UIG0 1483 aaKnown RBP13.53□□□□□ -0.24
MMP3-201ENST00000299855 CENPBP07199 599 aaPredicted RBP13.51□□□□□ -0.25
MMP3-201ENST00000299855 FAM9AQ8IZU1 332 aaPredicted RBP13.51□□□□□ -0.25
MMP3-201ENST00000299855 BRD2P25440 801 aaKnown RBP13.5□□□□□ -0.25
MMP3-201ENST00000299855 SAMD1Q6SPF0 538 aaPredicted RBP13.5□□□□□ -0.25
MMP3-201ENST00000299855 HSP90B1P14625 803 aaKnown RBP13.48□□□□□ -0.25
MMP3-201ENST00000299855 ERCC6Q03468 1493 aa13.47□□□□□ -0.25
MMP3-201ENST00000299855 NEUROD1Q13562 356 aa13.47□□□□□ -0.25
MMP3-201ENST00000299855 TRIM41Q8WV44 630 aa13.47□□□□□ -0.25
MMP3-201ENST00000299855 CCDC9Q9Y3X0 531 aaKnown RBP13.46□□□□□ -0.25
MMP3-201ENST00000299855 PDE4CQ08493 712 aa13.46□□□□□ -0.26
MMP3-201ENST00000299855 CUX2O14529 1486 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms